jgi.p|Nanoce1779_2|196298, mRNA_8440 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|196298
Unique NamemRNA_8440
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length641
Alignment locationscaffold_24:272640..273280 -

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Properties
Property NameValue
TranscriptId196384
TrackFilteredModels2
ProteinId196298
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:272640..273280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|196298gene_8440Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|196298mRNA_8440-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8440CDS_8440Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8440 ID=mRNA_8440|Name=jgi.p|Nanoce1779_2|196298|organism=Nannochloropsis oceanica|type=mRNA|length=641bp
TGCGCCAGTGATATTGTGAGACGAGGGATGTGGTGTGGTTACAAACGAAA
CGGCCCTTTAACGTCGCATCACCTACTATAACACGTCCTTGTCATGCCCT
CTTCCTCTCCTCATCTCTCTCATTCTCTCTCCCTCTCTTTCTTTCTCTCT
TCCTCCATCAGTGAATCGCTTCCTTCTCACTCGCCAGTGGCCTCTTCTAT
TCACTTTCTTCTCCCTACTCCTCATTTCAGTTCTCCTTCATTTTTATCTT
CTTCTCCCCTCTCATTCTTCCTCTGCGTCTTGAAGCCCGTTTTCTCTCTT
TCTTCCTCTCTTCCCCTTCACCGCGTCATTTTTTTCTTCCAACTCGTCCA
GAATTTTCTCCTAATGCTAGCTCTGACTGCCGTCTTTCTTTTCTCTGCCC
TCTCTTCGCAATTTCCCTCTCTTCGCAATTTCCCTCTCTTCGCAATTTAC
CTCTATTGCCACTTTTCCTCCATTCTATCTTTCTCATCTTCCTCCACCTG
CTCCTGCTCCACCTCTTCCCTCCCCTCTTCCCTCCCATTCCCAACAAGCT
AGCTAAGCGATTCCCCTACCTATCCACATAAACAAAATAATCCTTCTTCC
TCTTCTCATCCTCCCCCACCTTCATCCTCGCCGTCTCCCAT
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protein sequence of jgi.p|Nanoce1779_2|196298

>mRNA_8440-protein ID=mRNA_8440-protein|Name=jgi.p|Nanoce1779_2|196298|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MPSSSPHLSHSLSLSFFLSSSISESLPSHSPVASSIHFLLPTPHFSSPSF
LSSSPLSFFLCVLKPVFSLSSSLPLHRVIFFFQLVQNFLLMLALTAVFLF
SALSSQFPSLRNFPLFAIYLYCHFSSILSFSSSSTCSCSTSSLPSSLPFP
TS*
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mRNA from alignment at scaffold_24:272640..273280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8440 ID=mRNA_8440|Name=jgi.p|Nanoce1779_2|196298|organism=Nannochloropsis oceanica|type=mRNA|length=641bp|location=Sequence derived from alignment at scaffold_24:272640..273280- (Nannochloropsis oceanica)
TGCGCCAGTGATATTGTGAGACGAGGGATGTGGTGTGGTTACAAACGAAA
CGGCCCTTTAACGTCGCATCACCTACTATAACACGTCCTTGTCATGCCCT
CTTCCTCTCCTCATCTCTCTCATTCTCTCTCCCTCTCTTTCTTTCTCTCT
TCCTCCATCAGTGAATCGCTTCCTTCTCACTCGCCAGTGGCCTCTTCTAT
TCACTTTCTTCTCCCTACTCCTCATTTCAGTTCTCCTTCATTTTTATCTT
CTTCTCCCCTCTCATTCTTCCTCTGCGTCTTGAAGCCCGTTTTCTCTCTT
TCTTCCTCTCTTCCCCTTCACCGCGTCATTTTTTTCTTCCAACTCGTCCA
GAATTTTCTCCTAATGCTAGCTCTGACTGCCGTCTTTCTTTTCTCTGCCC
TCTCTTCGCAATTTCCCTCTCTTCGCAATTTCCCTCTCTTCGCAATTTAC
CTCTATTGCCACTTTTCCTCCATTCTATCTTTCTCATCTTCCTCCACCTG
CTCCTGCTCCACCTCTTCCCTCCCCTCTTCCCTCCCATTCCCAACAAGCT
AGCTAAGCGATTCCCCTACCTATCCACATAAACAAAATAATCCTTCTTCC
TCTTCTCATCCTCCCCCACCTTCATCCTCGCCGTCTCCCAT
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Coding sequence (CDS) from alignment at scaffold_24:272640..273280-

>mRNA_8440 ID=mRNA_8440|Name=jgi.p|Nanoce1779_2|196298|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_24:272640..273280- (Nannochloropsis oceanica)
ATGCCCTCTTCCTCTCCTCATCTCTCTCATTCTCTCTCCCTCTCTTTCTT
TCTCTCTTCCTCCATCAGTGAATCGCTTCCTTCTCACTCGCCAGTGGCCT
CTTCTATTCACTTTCTTCTCCCTACTCCTCATTTCAGTTCTCCTTCATTT
TTATCTTCTTCTCCCCTCTCATTCTTCCTCTGCGTCTTGAAGCCCGTTTT
CTCTCTTTCTTCCTCTCTTCCCCTTCACCGCGTCATTTTTTTCTTCCAAC
TCGTCCAGAATTTTCTCCTAATGCTAGCTCTGACTGCCGTCTTTCTTTTC
TCTGCCCTCTCTTCGCAATTTCCCTCTCTTCGCAATTTCCCTCTCTTCGC
AATTTACCTCTATTGCCACTTTTCCTCCATTCTATCTTTCTCATCTTCCT
CCACCTGCTCCTGCTCCACCTCTTCCCTCCCCTCTTCCCTCCCATTCCCA
ACAAGCTAG
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Synonyms
Publications