jgi.p|Nanoce1779_2|574326, mRNA_844 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574326
Unique Name	mRNA_844
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2380
Alignment location	scaffold_2:567730..570235 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574412
Track	FilteredModels2
ProteinId	574326

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:567730..570235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574326	gene_844	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574326	mRNA_844-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_844	CDS_844	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:567730..570235+
coding sequence from alignment at scaffold_2:567730..570235+

mRNA sequence

>mRNA_844 ID=mRNA_844|Name=jgi.p|Nanoce1779_2|574326|organism=Nannochloropsis oceanica|type=mRNA|length=2380bp
GCTCTCGACCACCTTTGCATTTCCCCTCCCCCCTTATGTAAGACAGACAA
GCTCCTAGACGTACTGATGCTGTCCTGAGTTGTGTATGCGGTGAATGTGG
TTTCGTGTGAGGGACAAGTGTGGTTAAGTTAGCAAGGGCCAGCCAACCGC
ATAACTGCAACTGGCGAGGCAACAACACGCGAGGCTGCTGACATGACAAG
GAATTATGCGCTTAGTCATTACTCCATTTACAGAGCTGCATACACCTTAC
AGGTAGCCGCGTAAAGCGAAGCAAGGGAATTGCCTCGACCACGTAGCCAG
CTGGTTTGACCAGCAACCATTGGCACGCCCTCCTTGCCTTGCACCATGAG
CGTCATCGTCGTGGGGTATCAATACAATACGATGATCGCATATCTAACGC
TGGCGCTGCGTCCTCCATTACCACAGGTCTCCGGCTTGTTGCAGGGCGCA
AGGAACGACACGGAGAAAGCTGAGCTCCCTCTTCACTCTCCCTCGGTGGC
GGCAGCGCGGGTGCACGACTAAATTGGCCTTGCATCGATTGATTGACCTC
CCCCCTTGGCGCGTCCCACTCTACGTGCCTTCATCCGAACACCTTCGGAA
ATGTTTGTGGGCAGTCGCAGGGGGTTCTCGCCTTGCTTGTGTTTTAATCT
GACACTTTTAATCATCATGACAATTCTGTCACGCATCGTGCTTTCTGCCG
GCCCCCGGCACCATGTAGCAGCGTTCACTGCATTGTCCTCCACTTCAAGA
GGCCAGCGCCACGCTCCTTCCTCTCGCTCCTCGTCTTTCGCCCTTCCTCA
CACCCGCCGGTCACCATTCTCCTTCGCACCAGCAACGCGACAATACGCAA
CTACTACAACTACTATCCCTCCAACCACCACCACCTCTACAACGACGGAG
CCCGCCCGCATCAAAGTCCGCGACATCCTCATTAAAGGCGACGACTCCCT
GCTCGGGCAACGCGTCACCATCAAAGGGTGGGTCCGCACGCTCCGTTCGC
AAAAAACCTTCAGCTTTATTGAAGTTAATGACGGCAGTACGCTCGGTGGG
CTTCAGATAGTCGCGGACGCCGAAAAGGTCGCTGGGTACGAGGCAGCTAT
TGCAGGCATCCACACTGGTGCGGCAATTGGCGTGGTGGGGACGATCAAAG
AATCACCGGGTAAAGGGCAAAAGTACGAAATTTCAGCAGAGACTATTGAG
GTGATCGGTGGATGTGATCCGGAGACGTATCCCTTGCAGAAGAAGAGGCA
TACTTTAGAGTTTTTGCGTGGCATCGCTCACTTGAGGCCACGGACTAACA
CTCTGGCGGCGGTGTCAAGAGTGAGATCGAGTTTAGCGTTTGCCACCCAT
AAATTTTTCCAGGATCAGGGATTTTATTACTTGCAGAGTCCGATCATCAC
GGCTTCGGATTGCGAGGGGGCGGGGGAGATGTTTCGGGTGACGACCTTGC
CAGATAAAGTGTCGCTCATTCCAAGGAAGAAGGAGGACAGCGATGCGATC
GATTACACGCAAGATTTTTTCGGGGCCCCTGCCTTTTTGACCGTGTCGGG
CCAATTATCAGGCGAGGCTTATGCGTGTGCCCTTGGGGATGTGTACACGT
TTGGGCCTACGTTTAGGGCGGAAAATAGTCAGACGACGCGGCATCTGGCG
GAGTTCAACATGATTGAGCCCGAAATGGCCTTTGCAGATCTGAAGGACAA
CATGCGTAACGCCGAAGCGTATGTCAAGGCAATTGTCGGACATATCTTGA
AGGAGTGTGGAGAGGATTTGGCGTTCTTTGAGAAGTTTTACGATAAGACG
TTGGTTGGGCGGTTGAATACGCTGGTCTCCGAGCCCTTTGCCCGGGTGGA
GTACAAGGAAGCCGTGCGTTTGTTGCAAGGAGAGATTGCCAAAGACGAGA
GCGCGTGGGCTTACCCCGAGGTGGAATTTGGGACTGACCTACAGACGGAG
CACGAACGGTGGTTGTGTGAGAAGCATTTCAACAGAGCAACATTTGTGTA
TAACTACCCAAGGAAAATAAAGGCTTTTTATATGAGGGATAATGAGGATG
GGGAGACGGTGGCGGCGATGGACTTGCTGGTGCCGGGGATAGGGGAATTG
ATTGGGGGGTCACAGAGGGAGGAGCGGCTGGAGAGGCTGGAGGAGAAGTT
GAAAGAATTTGGGCTGGACAGGGAGGATTATTGGTGGTACTTGGATTTAA
GGCGGTTTGGGGGAGTGCCGCACAGTGGGTACGGTTTGGGGTTTGAACGG
TTGGTTTGTTATGTTACAGGGGTGGAGAATATTAGGGATGCCATCGCCTT
CCCGCGGACACCGGGAAGTGCGTTGTTTTAGAGAAGGAAGGAGATGCCGC
GGACGAAGGAGGGAAAAAATTAAAATCATA

protein sequence of jgi.p|Nanoce1779_2|574326

>mRNA_844-protein ID=mRNA_844-protein|Name=jgi.p|Nanoce1779_2|574326|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MFVGSRRGFSPCLCFNLTLLIIMTILSRIVLSAGPRHHVAAFTALSSTSR
GQRHAPSSRSSSFALPHTRRSPFSFAPATRQYATTTTTIPPTTTTSTTTE
PARIKVRDILIKGDDSLLGQRVTIKGWVRTLRSQKTFSFIEVNDGSTLGG
LQIVADAEKVAGYEAAIAGIHTGAAIGVVGTIKESPGKGQKYEISAETIE
VIGGCDPETYPLQKKRHTLEFLRGIAHLRPRTNTLAAVSRVRSSLAFATH
KFFQDQGFYYLQSPIITASDCEGAGEMFRVTTLPDKVSLIPRKKEDSDAI
DYTQDFFGAPAFLTVSGQLSGEAYACALGDVYTFGPTFRAENSQTTRHLA
EFNMIEPEMAFADLKDNMRNAEAYVKAIVGHILKECGEDLAFFEKFYDKT
LVGRLNTLVSEPFARVEYKEAVRLLQGEIAKDESAWAYPEVEFGTDLQTE
HERWLCEKHFNRATFVYNYPRKIKAFYMRDNEDGETVAAMDLLVPGIGEL
IGGSQREERLERLEEKLKEFGLDREDYWWYLDLRRFGGVPHSGYGLGFER
LVCYVTGVENIRDAIAFPRTPGSALF*

mRNA from alignment at scaffold_2:567730..570235+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_844 ID=mRNA_844|Name=jgi.p|Nanoce1779_2|574326|organism=Nannochloropsis oceanica|type=mRNA|length=2506bp|location=Sequence derived from alignment at scaffold_2:567730..570235+ (Nannochloropsis oceanica)
GCTCTCGACCACCTTTGCATTTCCCCTCCCCCCTTATGTAAGACAGACAA
GCTCCTAGACGTACTGATGCTGTCCTGAGTTGTGTATGCGGTGAATGTGG
TTTCGTGTGAGGGACAAGTGTGGTTAAGTTAGCAAGGGCCAGCCAACCGC
ATAACTGCAACTGGCGAGGCAACAACACGCGAGGCTGCTGACATGACAAG
GAATTATGCGCTTAGTCATTACTCCATTTACAGAGCTGCATACACCTTAC
AGGTAGCCGCGTAAAGCGAAGCAAGGGAATTGCCTCGACCACGTAGCCAG
CTGGTTTGACCAGCAACCATTGGCACGCCCTCCTTGCCTTGCACCATGAG
CGTCATCGTCGTGGGGTATCAATACAATACGATGATCGCATATCTAACGC
TGGCGCTGCGTCCTCCATTACCACAGGTCTCCGGCTTGTTGCAGGGCGCA
AGGAACGACACGGAGAAAGCTGAGCTCCCTCTTCACTCTCCCTCGGTGGC
GGCAGCGCGGGTGCACGACTAAATTGGCCTTGCATCGATTGATTGACCTC
CCCCCTTGGCGCGTCCCACTCTACGTGCCTTCATCCGAACACCTTCGGAA
ATGTTTGTGGGCAGTCGCAGGGGGTTCTCGCCTTGCTTGTGTTTTAATCT
GACACTTTTAATCATCATGACAATTCTGTCACGCATCGTGCTTTCTGCCG
GCCCCCGGCACCATGTAGCAGCGTTCACTGCATTGTCCTCCACTTCAAGA
GGCCAGCGCCACGCTCCTTCCTCTCGCTCCTCGTCTTTCGCCCTTCCTCA
CACCCGCCGGTCACCATTCTCCTTCGCACCAGCAACGCGACAATACGCAA
CTACTACAACTACTATCCCTCCAACCACCACCACCTCTACAACGACGGAG
CCCGCCCGCATCAAAGTCCGCGACATCCTCATTAAAGGCGACGACTCCCT
GCTCGGGCAACGCGTCACCATCAAAGGGTGGGTCCGCACGCTCCGTTCGC
AAAAAACCTTCAGCTTTATTGAAGTTAATGACGGCAGTACGCTCGGTGGG
CTTCAGATAGTCGCGGACGCCGAAAAGGTCGCTGGGTACGAGGCAGCTAT
TGCAGGCATCCACACTGGTGCGGCAATTGGCGTGGTGGGGACGATCAAAG
AATCACCGGGTAAAGGGCAAAAGTACGAAATTTCAGCAGAGACTATTGAG
GTGATCGGTGGATGTGATCCGGAGACGTATCCCTTGCAGAAGAAGAGGCA
TACTTTAGAGTTTTTGCGTGGCATCGCTCACTTGAGGCCACGGACTAACA
CTCTGGCGGCGGTGTCAAGAGTGAGATCGAGTTTAGCGTTTGCCACCCAT
AAATTTTTCCAGGATCAGGGATTTTATTACTTGCAGAGTCCGATCATCAC
GGCTTCGGATTGCGAGGGGGCGGGGGAGATGTTTCGGGTGACGACCTTGC
CAGATAAAGTGTCGCTCATTCCAAGGAAGAAGGAGGACAGCGATGCGATC
GATTACACGCAAGATTTTTTCGGGGCCCCTGCCTTTTTGACCGTGTCGGG
CCAATTATCAGGCGAGGCTTATGCGTGTGCCCTTGGGGATGTGTACACGT
TTGGGCCTACGTTTAGGGCGGAAAATAGTCAGACGACGCGGCATCTGGCG
GAGTTCAACATGATTGAGCCCGAAATGGCCTTTGCAGATCTGAAGGACAA
CATGCGTAACGCCGAAGCGTATGTCAAGGCAATTGTCGGACATATCTTGA
AGGAGTGTGGAGAGGATTTGGCGTTCTTTGAGAAGTTTTACGATAAGACG
TTGGTTGGGCGGTTGAATACGGTAAGGGAGGGAGGGAGGGAGGGAAGGCA
CACGAGAGCAAATTAATGTCTATGTTTTCTAATCCCTTCCGTTCCTGCAA
AGTCAAGCGTTCCTCCCGCTCACACCTTCCCCGATCACTACATGCAGCTG
GTCTCCGAGCCCTTTGCCCGGGTGGAGTACAAGGAAGCCGTGCGTTTGTT
GCAAGGAGAGATTGCCAAAGACGAGAGCGCGTGGGCTTACCCCGAGGTGG
AATTTGGGACTGACCTACAGACGGAGCACGAACGGTGGTTGTGTGAGAAG
CATTTCAACAGAGCAACATTTGTGTATAACTACCCAAGGAAAATAAAGGC
TTTTTATATGAGGGATAATGAGGATGGGGAGACGGTGGCGGCGATGGACT
TGCTGGTGCCGGGGATAGGGGAATTGATTGGGGGGTCACAGAGGGAGGAG
CGGCTGGAGAGGCTGGAGGAGAAGTTGAAAGAATTTGGGCTGGACAGGGA
GGATTATTGGTGGTACTTGGATTTAAGGCGGTTTGGGGGAGTGCCGCACA
GTGGGTACGGTTTGGGGTTTGAACGGTTGGTTTGTTATGTTACAGGGGTG
GAGAATATTAGGGATGCCATCGCCTTCCCGCGGACACCGGGAAGTGCGTT
GTTTTAGAGAAGGAAGGAGATGCCGCGGACGAAGGAGGGAAAAAATTAAA
ATCATA

Coding sequence (CDS) from alignment at scaffold_2:567730..570235+

>mRNA_844 ID=mRNA_844|Name=jgi.p|Nanoce1779_2|574326|organism=Nannochloropsis oceanica|type=CDS|length=3462bp|location=Sequence derived from alignment at scaffold_2:567730..570235+ (Nannochloropsis oceanica)
ATGTTTGTGGGCAGTCGCAGGGGGTTCTCGCCTTGCTTGTGTTTTAATCT
GACACTTTTAATCATCATGACAATTCTGTCACGCATCGTGCTTTCTGCCG
GCCCCCGGCACCATGTAGCAGCGTTCACTGCATTGTCCTCCACTTCAAGA
GGCCAGCGCCACGCTCCTTCCTCTCGCTCCTCGTCTTTCGCCCTTCCTCA
CACCCGCCGGTCACCATTCTCCTTCGCACCAGCAACGCGACAATACGCAA
CTACTACAACTACTATCCCTCCAACCACCACCACCTCTACAACGACGGAG
CCCGCCCGCATCAAAGTCCGCGACATCCTCATTAAAGGCGACGACTCCCT
GCTCGGGCAACGCGTCACCATCAAAGGGTGGGTCCGCACGCTCCGTTCGC
AAAAAACCTTCAGCTTTATTGAAGTTAATGACGGCAGTACGCTCGGTGGG
CTTCAGATAGTCGCGGACGCCGAAAAGGTCGCTGGGTACGAGGCAGCTAT
TGCAGGCATCCACACTGGTGCGGCAATTGGCGTGGTGGGGACGATCAAAG
AATCACCGGGTAAAGGGCAAAAGTACGAAATTTCAGCAGAGACTATTGAG
GTGATCGGTGGATGTGATCCGGAGACGTATCCCTTGCAGAAGAAGAGGCA
TACTTTAGAGTTTTTGCGTGGCATCGCTCACTTGAGGCCACGGACTAACA
CTCTGGCGGCGGTGTCAAGAGTGAGATCGAGTTTAGCGTTTGCCACCCAT
AAATTTTTCCAGGATCAGGGATTTTATTACTTGCAGAGTCCGATCATCAC
GGCTTCGGATTGCGAGGGGGCGGGGGAGATGTTTCGGGTGACGACCTTGC
CAGATAAAGTGTCGCTCATTCCAAGGAAGAAGGAGGACAGCGATGCGATC
GATTACACGCAAGATTTTTTCGGGGCCCCTGCCTTTTTGACCGTGTCGGG
CCAATTATCAGGCGAGGCTTATGCGTGTGCCCTTGGGGATGTGTACACGT
TTGGGCCTACGTTTAGGGCGGAAAATAGTCAGACGACGCGGCATCTGGCG
GAGTTCAACATGATTGAGCCCGAAATGGCCTTTGCAGATCTGAAGGACAA
CATGCGTAACGCCGAAGCGTATGTCAAGGCAATTGTCGGACATATCTTGA
AGGAGTGTGGAGAGGATTTGGCGTTCTTTGAGAAGTTTTACGATAAGACG
TTGGTTGGGCGGTTGAATACGCTGGTCTCCGAGCCCTTTGCCCGGGTGGA
GTACAAGGAAGCCGTGCGTTTGTTGCAAGGAGAGATTGCCAAAGACGAGA
GCGCGTGGGCTTACCCCGAGGTGGAATTTGGGACTGACCTACAGACGGAG
CACGAACGGTGGTTGTGTGAGAAGCATTTCAACAGAGCAACATTTGTGTA
TAACTACCCAAGGAAAATAAAGGCTTTTTATATGAGGGATAATGAGGATG
GGGAGACGGTGGCGGCGATGGACTTGCTGGTGCCGGGGATAGGGGAATTG
ATTGGGGGGTCACAGAGGGAGGAGCGGCTGGAGAGGCTGGAGGAGAAGTT
GAAAGAATTTGGGCTGGACAGGGAGGATTATTGGTGGTACTTGGATTTAA
GGCGGTTTGGGGGAGTGCCGCACAGTGGGTACGGTTTGGGGTTTGAACGG
TTGGTTTGTTATGTTACAGGGGTGGAGAATATTAGGGATGCCATCGCCTT
CCCGCGGACACCGGGAAGTGCGTTGTTTTAGATGTTTGTGGGCAGTCGCA
GGGGGTTCTCGCCTTGCTTGTGTTTTAATCTGACACTTTTAATCATCATG
ACAATTCTGTCACGCATCGTGCTTTCTGCCGGCCCCCGGCACCATGTAGC
AGCGTTCACTGCATTGTCCTCCACTTCAAGAGGCCAGCGCCACGCTCCTT
CCTCTCGCTCCTCGTCTTTCGCCCTTCCTCACACCCGCCGGTCACCATTC
TCCTTCGCACCAGCAACGCGACAATACGCAACTACTACAACTACTATCCC
TCCAACCACCACCACCTCTACAACGACGGAGCCCGCCCGCATCAAAGTCC
GCGACATCCTCATTAAAGGCGACGACTCCCTGCTCGGGCAACGCGTCACC
ATCAAAGGGTGGGTCCGCACGCTCCGTTCGCAAAAAACCTTCAGCTTTAT
TGAAGTTAATGACGGCAGTACGCTCGGTGGGCTTCAGATAGTCGCGGACG
CCGAAAAGGTCGCTGGGTACGAGGCAGCTATTGCAGGCATCCACACTGGT
GCGGCAATTGGCGTGGTGGGGACGATCAAAGAATCACCGGGTAAAGGGCA
AAAGTACGAAATTTCAGCAGAGACTATTGAGGTGATCGGTGGATGTGATC
CGGAGACGTATCCCTTGCAGAAGAAGAGGCATACTTTAGAGTTTTTGCGT
GGCATCGCTCACTTGAGGCCACGGACTAACACTCTGGCGGCGGTGTCAAG
AGTGAGATCGAGTTTAGCGTTTGCCACCCATAAATTTTTCCAGGATCAGG
GATTTTATTACTTGCAGAGTCCGATCATCACGGCTTCGGATTGCGAGGGG
GCGGGGGAGATGTTTCGGGTGACGACCTTGCCAGATAAAGTGTCGCTCAT
TCCAAGGAAGAAGGAGGACAGCGATGCGATCGATTACACGCAAGATTTTT
TCGGGGCCCCTGCCTTTTTGACCGTGTCGGGCCAATTATCAGGCGAGGCT
TATGCGTGTGCCCTTGGGGATGTGTACACGTTTGGGCCTACGTTTAGGGC
GGAAAATAGTCAGACGACGCGGCATCTGGCGGAGTTCAACATGATTGAGC
CCGAAATGGCCTTTGCAGATCTGAAGGACAACATGCGTAACGCCGAAGCG
TATGTCAAGGCAATTGTCGGACATATCTTGAAGGAGTGTGGAGAGGATTT
GGCGTTCTTTGAGAAGTTTTACGATAAGACGTTGGTTGGGCGGTTGAATA
CGCTGGTCTCCGAGCCCTTTGCCCGGGTGGAGTACAAGGAAGCCGTGCGT
TTGTTGCAAGGAGAGATTGCCAAAGACGAGAGCGCGTGGGCTTACCCCGA
GGTGGAATTTGGGACTGACCTACAGACGGAGCACGAACGGTGGTTGTGTG
AGAAGCATTTCAACAGAGCAACATTTGTGTATAACTACCCAAGGAAAATA
AAGGCTTTTTATATGAGGGATAATGAGGATGGGGAGACGGTGGCGGCGAT
GGACTTGCTGGTGCCGGGGATAGGGGAATTGATTGGGGGGTCACAGAGGG
AGGAGCGGCTGGAGAGGCTGGAGGAGAAGTTGAAAGAATTTGGGCTGGAC
AGGGAGGATTATTGGTGGTACTTGGATTTAAGGCGGTTTGGGGGAGTGCC
GCACAGTGGGTACGGTTTGGGGTTTGAACGGTTGGTTTGTTATGTTACAG
GGGTGGAGAATATTAGGGATGCCATCGCCTTCCCGCGGACACCGGGAAGT
GCGTTGTTTTAG

Synonyms

Publications