jgi.p|Nanoce1779_2|602032, mRNA_8439 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602032
Unique Name	mRNA_8439
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1635
Alignment location	scaffold_24:271132..273165 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602118
Track	FilteredModels2
ProteinId	602032

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:271132..273165 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602032	gene_8439	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602032	mRNA_8439-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8439	CDS_8439	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:271132..273165+
coding sequence from alignment at scaffold_24:271132..273165+

mRNA sequence

>mRNA_8439 ID=mRNA_8439|Name=jgi.p|Nanoce1779_2|602032|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp
CAGCAGCAGCAGCAGGGTATCACATACGTTCTTATCCTCCTTGGTATCTG
CGGCGGTTGGGGTGGAGGAGGAGAGCCTTAAGCCTTTCCTCATTCCCGCC
GGCATGGGTCCTCTGACATACAGCAGCAGCAGCAGCAGTAGCAGCTACAG
CTATGGCAGTGGTGCAGGATTTTTCCATTTGCATGAAGATCTGGGACCCT
TAAGTAGTGAGGAAGCAATGGAGGGAGAGAGGGAGGGAGAAGGAGGGAAG
AGAGTGATGGAGGAAGTGGAAGAAGAGGTGGAGGAACAGCACGCCGCGAC
GAGTAGCAGCAATTGGGTAGAGAGCAGAAGAAGAAGAGGAAGCACCCCCT
CTCCTTCGTCGCCATCGTCGTCCTCTTCCTCCTCATCCTCAGCAACAAAA
GGATTTATGGACGAGGGCGGGGAGGCGGACGGGGGGGAAGGGATGCACAC
ACCTCACCAGCACCTCAAAGCTTCGGGCGACCTTCTGCGTGCTTTCCCCT
CTATGACCGAGCAGACCCCTCCTCCCTCCCCGCGCTTGCAAGGCGACGAC
GACAAGCGGAACCAGCAGGGCGGCAACAACTTCACAATTAACCTCGGGCG
GGCCCTGGACCACTTGCGGGTGGACGTGCCCCTCCTCTTCGACCGCGAGC
CCGACCTCTCCATCTACACAGAGGACGTCCGACTGAGAGACGAGGCGCGC
GTGTACGCAAGCGGGAAGTTCATGTACCAGATGGTGTATTTCTCGCTCCG
ACTGGCGAAGGTGTTCATGCCCATGCCGCCACTGGTGGAGGTGCTCAACA
TCAGGTGGTGCCCAGCCAGACAGTGCATTGAAGTCCGCTTTCAGATCCGG
GTGGATACCTTGTCAGACTCACTCTACTTCGACGCCGTGTCGGTGTATAG
GGTCAACGCCAAGGGCCTCATCTACGAGCACTTGATTGAAAAAATCATCC
GCAACGACCTCTCGGAGAAACCCTCTATGGTCAGCCTCTTCTACGCCACG
CGCCAGGTGCTCATTGGGGGGAACCAGCCCATTCCTGACAGCGTGGGAAT
GTGAGGCGAGGGAGGAAGAGAAGGAGGGAGGGAGAGAAGGAAGGATTGTT
TTGGGAGATACACCCATTTACCACTTATGGGAGACGGCGAGGATGAAGGT
GGGGGAGGATGAGAAGAGGAAGAAGGATTATTTTGTTTATGTGGATAGGT
AGGGGAATCGCTTAGCTAGCTTGTTGGGAATGGGAGGGAAGAGGGGAGGG
AAGAGGTGGAGCAGGAGCAGGTGGAGGAAGATGAGAAAGATAGAATGGAG
GAAAAGTGGCAATAGAGGTAAATTGCGAAGAGAGGGAAATTGCGAAGAGA
GGGCAGAGAAAAGAAAGACGGCAGTCAGAGCTAGCATTAGGAGAAAATTC
TGGACGAGTTGGAAGAAAAAAATGACGCGGTGAAGGGGAAGAGAGGAAGA
AAGAGAGAAAACGGGCTTCAAGACGCAGAGGAAGAATGAGAGGGGAGAAG
AAGATAAAAATGAAGGAGAACTGAAATGAGGAGTAGGGAGAAGAAAGTGA
ATAGAAGAGGCCACTGGCGAGTGAGAAGGAAGCGATTCACTGATGGAGGA
AGAGAGAAAGAAAGAGAGGGAGAGAGAATGAGAGA

protein sequence of jgi.p|Nanoce1779_2|602032

>mRNA_8439-protein ID=mRNA_8439-protein|Name=jgi.p|Nanoce1779_2|602032|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MGPLTYSSSSSSSSYSYGSGAGFFHLHEDLGPLSSEEAMEGEREGEGGKR
VMEEVEEEVEEQHAATSSSNWVESRRRRGSTPSPSSPSSSSSSSSSATKG
FMDEGGEADGGEGMHTPHQHLKASGDLLRAFPSMTEQTPPPSPRLQGDDD
KRNQQGGNNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARV
YASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQIRV
DTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLFYATR
QVLIGGNQPIPDSVGM*

mRNA from alignment at scaffold_24:271132..273165+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8439 ID=mRNA_8439|Name=jgi.p|Nanoce1779_2|602032|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp|location=Sequence derived from alignment at scaffold_24:271132..273165+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGGGTATCACATACGTTCTTATCCTCCTTGGTATCTG
CGGCGGTTGGGGTGGAGGAGGAGAGCCTTAAGCCTTTCCTCATTCCCGCC
GGCATGGGTCCTCTGACATACAGCAGCAGCAGCAGCAGTAGCAGCTACAG
CTATGGCAGTGGTGCAGGATTTTTCCATTTGCATGAAGATCTGGGACCCT
TAAGTAGTGAGGAAGCAATGGAGGGAGAGAGGGAGGGAGAAGGAGGGAAG
AGAGTGATGGAGGAAGTGGAAGAAGAGGTGGAGGAACAGCACGCCGCGAC
GAGTAGCAGCAATTGGGTAGAGAGCAGAAGAAGAAGAGGAAGCACCCCCT
CTCCTTCGTCGCCATCGTCGTCCTCTTCCTCCTCATCCTCAGCAACAAAA
GGATTTATGGACGAGGGCGGGGAGGCGGACGGGGGGGAAGGGATGCACAC
ACCTCACCAGCACCTCAAAGCTTCGGGCGACCTTCTGCGTGCTTTCCCCT
CTATGACCGAGCAGACCCCTCCTCCCTCCCCGCGCTTGCAAGGCGACGAC
GACAAGCGGAACCAGCAGGGCGGCAACAACTTCACAATTAACCTCGGGCG
GGCCCTGGACCACTTGCGGGTGGACGTGCCCCTCCTCTTCGACCGCGAGC
CCGACCTCTCCATCTACACAGAGGACGTCCGACTGAGAGACGAGGCGCGC
GTGTACGCAAGCGGGAAGTTCATGTACCAGATGGTGTATTTCTCGCTCCG
ACTGGCGAAGGTGTTCATGCCCATGCCGCCACTGGTGGAGGTGCTCAACA
TCAGGTGGTGCCCAGCCAGACAGTGCATTGAAGTCCGCTTTCAGATCCGG
GTGGATACCTTGTCAGACTCACTCTACTTCGACGCCGTGTCGGTGTATAG
GGTCAACGCCAAGGGCCTCATCTACGAGCACTTGATTGAAAAAAGTACGT
GTGCTTCTCCCCTCCCTTCCCTCCCCTCCCTCCTTCCCCCCCCGTGTGTC
AGCATGACCCCCGACTCCCCAAGTCAATCCACTTCTCCCCTCCCTTCCCT
CCCCTCCCTCCTTCCCCCCCCGTGTCTCAGCATGACCCCCGACTCCCCAA
GTCAATCCACTTCTCCCCTCCCTTCCCTCCCCTCCCTCCTTCCCCCCCCG
GGTGTCAGCATGACCCCCGACTCCCCAAGTCAATCCACTTCCCCTCACCC
CCTTCCCTCTTTTACCATCTTACCAAGCCTGCCAAGCCCGCTATTTCGAC
CCATATGTTGCCACGTTCCGAATCACAAGGAAAGCACACTCACGGCCAAC
CCTCCTTCCCCTCTCTCTTCCTTTAGTCATCCGCAACGACCTCTCGGAGA
AACCCTCTATGGTCAGCCTCTTCTACGCCACGCGCCAGGTGCTCATTGGG
GGGAACCAGCCCATTCCTGACAGCGTGGGAATGTGAGGCGAGGGAGGAAG
AGAAGGAGGGAGGGAGAGAAGGAAGGATTGTTTTGGGAGATACACCCATT
TACCACTTATGGGAGACGGCGAGGATGAAGGTGGGGGAGGATGAGAAGAG
GAAGAAGGATTATTTTGTTTATGTGGATAGGTAGGGGAATCGCTTAGCTA
GCTTGTTGGGAATGGGAGGGAAGAGGGGAGGGAAGAGGTGGAGCAGGAGC
AGGTGGAGGAAGATGAGAAAGATAGAATGGAGGAAAAGTGGCAATAGAGG
TAAATTGCGAAGAGAGGGAAATTGCGAAGAGAGGGAAATTGCGAAGAGAG
GGCAGAGAAAAGAAAGACGGCAGTCAGAGCTAGCATTAGGAGAAAATTCT
GGACGAGTTGGAAGAAAAAAATGACGCGGTGAAGGGGAAGAGAGGAAGAA
AGAGAGAAAACGGGCTTCAAGACGCAGAGGAAGAATGAGAGGGGAGAAGA
AGATAAAAATGAAGGAGAACTGAAATGAGGAGTAGGGAGAAGAAAGTGAA
TAGAAGAGGCCACTGGCGAGTGAGAAGGAAGCGATTCACTGATGGAGGAA
GAGAGAAAGAAAGAGAGGGAGAGAGAATGAGAGA

Coding sequence (CDS) from alignment at scaffold_24:271132..273165+

>mRNA_8439 ID=mRNA_8439|Name=jgi.p|Nanoce1779_2|602032|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_24:271132..273165+ (Nannochloropsis oceanica)
ATGGGTCCTCTGACATACAGCAGCAGCAGCAGCAGTAGCAGCTACAGCTA
TGGCAGTGGTGCAGGATTTTTCCATTTGCATGAAGATCTGGGACCCTTAA
GTAGTGAGGAAGCAATGGAGGGAGAGAGGGAGGGAGAAGGAGGGAAGAGA
GTGATGGAGGAAGTGGAAGAAGAGGTGGAGGAACAGCACGCCGCGACGAG
TAGCAGCAATTGGGTAGAGAGCAGAAGAAGAAGAGGAAGCACCCCCTCTC
CTTCGTCGCCATCGTCGTCCTCTTCCTCCTCATCCTCAGCAACAAAAGGA
TTTATGGACGAGGGCGGGGAGGCGGACGGGGGGGAAGGGATGCACACACC
TCACCAGCACCTCAAAGCTTCGGGCGACCTTCTGCGTGCTTTCCCCTCTA
TGACCGAGCAGACCCCTCCTCCCTCCCCGCGCTTGCAAGGCGACGACGAC
AAGCGGAACCAGCAGGGCGGCAACAACTTCACAATTAACCTCGGGCGGGC
CCTGGACCACTTGCGGGTGGACGTGCCCCTCCTCTTCGACCGCGAGCCCG
ACCTCTCCATCTACACAGAGGACGTCCGACTGAGAGACGAGGCGCGCGTG
TACGCAAGCGGGAAGTTCATGTACCAGATGGTGTATTTCTCGCTCCGACT
GGCGAAGGTGTTCATGCCCATGCCGCCACTGGTGGAGGTGCTCAACATCA
GGTGGTGCCCAGCCAGACAGTGCATTGAAGTCCGCTTTCAGATCCGGGTG
GATACCTTGTCAGACTCACTCTACTTCGACGCCGTGTCGGTGTATAGGGT
CAACGCCAAGGGCCTCATCTACGAGCACTTGATTGAAAAAATCATCCGCA
ACGACCTCTCGGAGAAACCCTCTATGGTCAGCCTCTTCTACGCCACGCGC
CAGGTGCTCATTGGGGGGAACCAGCCCATTCCTGACAGCGTGGGAATGTG
AATGGGTCCTCTGACATACAGCAGCAGCAGCAGCAGTAGCAGCTACAGCT
ATGGCAGTGGTGCAGGATTTTTCCATTTGCATGAAGATCTGGGACCCTTA
AGTAGTGAGGAAGCAATGGAGGGAGAGAGGGAGGGAGAAGGAGGGAAGAG
AGTGATGGAGGAAGTGGAAGAAGAGGTGGAGGAACAGCACGCCGCGACGA
GTAGCAGCAATTGGGTAGAGAGCAGAAGAAGAAGAGGAAGCACCCCCTCT
CCTTCGTCGCCATCGTCGTCCTCTTCCTCCTCATCCTCAGCAACAAAAGG
ATTTATGGACGAGGGCGGGGAGGCGGACGGGGGGGAAGGGATGCACACAC
CTCACCAGCACCTCAAAGCTTCGGGCGACCTTCTGCGTGCTTTCCCCTCT
ATGACCGAGCAGACCCCTCCTCCCTCCCCGCGCTTGCAAGGCGACGACGA
CAAGCGGAACCAGCAGGGCGGCAACAACTTCACAATTAACCTCGGGCGGG
CCCTGGACCACTTGCGGGTGGACGTGCCCCTCCTCTTCGACCGCGAGCCC
GACCTCTCCATCTACACAGAGGACGTCCGACTGAGAGACGAGGCGCGCGT
GTACGCAAGCGGGAAGTTCATGTACCAGATGGTGTATTTCTCGCTCCGAC
TGGCGAAGGTGTTCATGCCCATGCCGCCACTGGTGGAGGTGCTCAACATC
AGGTGGTGCCCAGCCAGACAGTGCATTGAAGTCCGCTTTCAGATCCGGGT
GGATACCTTGTCAGACTCACTCTACTTCGACGCCGTGTCGGTGTATAGGG
TCAACGCCAAGGGCCTCATCTACGAGCACTTGATTGAAAAAATCATCCGC
AACGACCTCTCGGAGAAACCCTCTATGGTCAGCCTCTTCTACGCCACGCG
CCAGGTGCTCATTGGGGGGAACCAGCCCATTCCTGACAGCGTGGGAATGT
GA

Synonyms

Publications