jgi.p|Nanoce1779_2|602030, mRNA_8438 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602030
Unique NamemRNA_8438
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1114
Alignment locationscaffold_24:268406..269519 -

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Properties
Property NameValue
TranscriptId602116
TrackFilteredModels2
ProteinId602030
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:268406..269519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602030gene_8438Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8438CDS_8438Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602030mRNA_8438-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8438 ID=mRNA_8438|Name=jgi.p|Nanoce1779_2|602030|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
ATGTCGTCTCCTCCACATTTGTTACCCCTCTCCTTGCCCAGCGCCCGCAA
CTGGCACGCCGCCGCCGTCGAGGCCGCCGCTACTGTAGATGCGGCTGCTG
CTACTGGTGGTACTTGTCTTCCTCCTCCTCAATTCCTCTCTCCGACAGGT
CTGGTTATTCACCACGTGGTCTTGGCTGACTTTGATGTTACTTCTGGCTC
GACGGTGCGGCATCAGTACCCTCGTCCGGTCCCTGGGGAGAGTCCTGATG
GCTTAGCGGAAAAGATGTTGCCGGAGGGTGCACACAGTCACTCTGAGAAC
GAGACGTGGTTTTTCCTCAACCGGAACTCGCCCACTTTCGATGAGCAGGA
GGCGTTAGCGGCAAGGGAGGGAGGGAAAGGGGGAAGAAATAGTGTAGGAT
GGAAGGGACGGACGGAGATTGGCAGCAGTATACCTGCTCCTGATTCTTTA
GGAGGGAGGGAGGGAGAAAGCACTATTCCTCCTCCTTTCTTGTATGGCTT
TAGCATCGTCAAGACACAACGGGACGCAGCTGCCCGACGAGGAGCAGTAG
TGAAAGCACTCGCCCTGGTCTCGCCCCTGCCTTTTCTCCACGTCTTTCGT
CCAGCTATGGTCCTGGCGCTTGATGAATATTTCGCTGTGTGGAGCGCAGT
AGCAGCAGCAGCAACACCCACCACTTTTTCTTCTCCCCTTTCCTCGGCGT
CAGCAGTGCCACCTGTCAAAACATGCATAAATCAACAGCAGCCAGAACTA
CAACCATCACACCAACTGGACCATCAGCAGCTGTGCGTCATCCAGCGGCT
CTACACCAGACTTAATGCCCTTGACCTTCACTCAATCCCCCGGCCCTCCC
TTCTCGAACGCAGCCTCATGCGACGAGGGGTGGGCGCACATTTTATGATT
CGCCGGCCATCCCTTCTTCCCTCCGACCCTCCATCGCCTTTGCTGGAACA
AGGGCAAGGAGAAGATTCGATGGCGGCCGCCGCGGCAGCAGCGGCAGCAG
TGTCAGCAACAGGGGGGATTGCTTTCTACACTCCCAGCGACCCAGTGTGG
ACGGTGCGCCTCTCTGTGCCTCGGACGCGAGAGAGACAGAAGGAGGAGGA
GGAGGAGGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|602030

>mRNA_8438-protein ID=mRNA_8438-protein|Name=jgi.p|Nanoce1779_2|602030|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MSSPPHLLPLSLPSARNWHAAAVEAAATVDAAAATGGTCLPPPQFLSPTG
LVIHHVVLADFDVTSGSTVRHQYPRPVPGESPDGLAEKMLPEGAHSHSEN
ETWFFLNRNSPTFDEQEALAAREGGKGGRNSVGWKGRTEIGSSIPAPDSL
GGREGESTIPPPFLYGFSIVKTQRDAAARRGAVVKALALVSPLPFLHVFR
PAMVLALDEYFAVWSAVAAAATPTTFSSPLSSASAVPPVKTCINQQQPEL
QPSHQLDHQQLCVIQRLYTRLNALDLHSIPRPSLLERSLMRRGVGAHFMI
RRPSLLPSDPPSPLLEQGQGEDSMAAAAAAAAAVSATGGIAFYTPSDPVW
TVRLSVPRTRERQKEEEEEEE
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mRNA from alignment at scaffold_24:268406..269519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8438 ID=mRNA_8438|Name=jgi.p|Nanoce1779_2|602030|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp|location=Sequence derived from alignment at scaffold_24:268406..269519- (Nannochloropsis oceanica)
ATGTCGTCTCCTCCACATTTGTTACCCCTCTCCTTGCCCAGCGCCCGCAA
CTGGCACGCCGCCGCCGTCGAGGCCGCCGCTACTGTAGATGCGGCTGCTG
CTACTGGTGGTACTTGTCTTCCTCCTCCTCAATTCCTCTCTCCGACAGGT
CTGGTTATTCACCACGTGGTCTTGGCTGACTTTGATGTTACTTCTGGCTC
GACGGTGCGGCATCAGTACCCTCGTCCGGTCCCTGGGGAGAGTCCTGATG
GCTTAGCGGAAAAGATGTTGCCGGAGGGTGCACACAGTCACTCTGAGAAC
GAGACGTGGTTTTTCCTCAACCGGAACTCGCCCACTTTCGATGAGCAGGA
GGCGTTAGCGGCAAGGGAGGGAGGGAAAGGGGGAAGAAATAGTGTAGGAT
GGAAGGGACGGACGGAGATTGGCAGCAGTATACCTGCTCCTGATTCTTTA
GGAGGGAGGGAGGGAGAAAGCACTATTCCTCCTCCTTTCTTGTATGGCTT
TAGCATCGTCAAGACACAACGGGACGCAGCTGCCCGACGAGGAGCAGTAG
TGAAAGCACTCGCCCTGGTCTCGCCCCTGCCTTTTCTCCACGTCTTTCGT
CCAGCTATGGTCCTGGCGCTTGATGAATATTTCGCTGTGTGGAGCGCAGT
AGCAGCAGCAGCAACACCCACCACTTTTTCTTCTCCCCTTTCCTCGGCGT
CAGCAGTGCCACCTGTCAAAACATGCATAAATCAACAGCAGCCAGAACTA
CAACCATCACACCAACTGGACCATCAGCAGCTGTGCGTCATCCAGCGGCT
CTACACCAGACTTAATGCCCTTGACCTTCACTCAATCCCCCGGCCCTCCC
TTCTCGAACGCAGCCTCATGCGACGAGGGGTGGGCGCACATTTTATGATT
CGCCGGCCATCCCTTCTTCCCTCCGACCCTCCATCGCCTTTGCTGGAACA
AGGGCAAGGAGAAGATTCGATGGCGGCCGCCGCGGCAGCAGCGGCAGCAG
TGTCAGCAACAGGGGGGATTGCTTTCTACACTCCCAGCGACCCAGTGTGG
ACGGTGCGCCTCTCTGTGCCTCGGACGCGAGAGAGACAGAAGGAGGAGGA
GGAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_24:268406..269519-

>mRNA_8438 ID=mRNA_8438|Name=jgi.p|Nanoce1779_2|602030|organism=Nannochloropsis oceanica|type=CDS|length=1114bp|location=Sequence derived from alignment at scaffold_24:268406..269519- (Nannochloropsis oceanica)
ATGTCGTCTCCTCCACATTTGTTACCCCTCTCCTTGCCCAGCGCCCGCAA
CTGGCACGCCGCCGCCGTCGAGGCCGCCGCTACTGTAGATGCGGCTGCTG
CTACTGGTGGTACTTGTCTTCCTCCTCCTCAATTCCTCTCTCCGACAGGT
CTGGTTATTCACCACGTGGTCTTGGCTGACTTTGATGTTACTTCTGGCTC
GACGGTGCGGCATCAGTACCCTCGTCCGGTCCCTGGGGAGAGTCCTGATG
GCTTAGCGGAAAAGATGTTGCCGGAGGGTGCACACAGTCACTCTGAGAAC
GAGACGTGGTTTTTCCTCAACCGGAACTCGCCCACTTTCGATGAGCAGGA
GGCGTTAGCGGCAAGGGAGGGAGGGAAAGGGGGAAGAAATAGTGTAGGAT
GGAAGGGACGGACGGAGATTGGCAGCAGTATACCTGCTCCTGATTCTTTA
GGAGGGAGGGAGGGAGAAAGCACTATTCCTCCTCCTTTCTTGTATGGCTT
TAGCATCGTCAAGACACAACGGGACGCAGCTGCCCGACGAGGAGCAGTAG
TGAAAGCACTCGCCCTGGTCTCGCCCCTGCCTTTTCTCCACGTCTTTCGT
CCAGCTATGGTCCTGGCGCTTGATGAATATTTCGCTGTGTGGAGCGCAGT
AGCAGCAGCAGCAACACCCACCACTTTTTCTTCTCCCCTTTCCTCGGCGT
CAGCAGTGCCACCTGTCAAAACATGCATAAATCAACAGCAGCCAGAACTA
CAACCATCACACCAACTGGACCATCAGCAGCTGTGCGTCATCCAGCGGCT
CTACACCAGACTTAATGCCCTTGACCTTCACTCAATCCCCCGGCCCTCCC
TTCTCGAACGCAGCCTCATGCGACGAGGGGTGGGCGCACATTTTATGATT
CGCCGGCCATCCCTTCTTCCCTCCGACCCTCCATCGCCTTTGCTGGAACA
AGGGCAAGGAGAAGATTCGATGGCGGCCGCCGCGGCAGCAGCGGCAGCAG
TGTCAGCAACAGGGGGGATTGCTTTCTACACTCCCAGCGACCCAGTGTGG
ACGGTGCGCCTCTCTGTGCCTCGGACGCGAGAGAGACAGAAGGAGGAGGA
GGAGGAGGAGGAGG
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Synonyms
Publications