jgi.p|Nanoce1779_2|602026, mRNA_8437 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602026
Unique NamemRNA_8437
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length965
Alignment locationscaffold_24:266484..267724 -

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Properties
Property NameValue
TranscriptId602112
TrackFilteredModels2
ProteinId602026
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:266484..267724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602026gene_8437Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602026mRNA_8437-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8437CDS_8437Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8437 ID=mRNA_8437|Name=jgi.p|Nanoce1779_2|602026|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
GGCACTGTTACCTGCCTGGAGAAAAACGGGGAGGAGGAGGAACAGCAGCA
GCAGCAGCAGCAGAGGACCGAGTAGGTAAGGAGGGAGGAAGGGAGGGGGG
AAGGGGTCCGGCGCCTGAGTGGTTGGAGGGGGAGGCCTTATCATCGGAGA
TGGATGCAATGTTCATGACACGGGTGCAGGCAACTGTGGCGGCAGCAGAG
GCAGCAGCACCAGCGCCAGCAGCAGGGTTGGAAGCAGAGTGGGAGGGAAG
GGTAAGAGTGGAGGAGTATCTTCGCGGGATATTTCAAGCGCACACCCAGT
CGCTGCTTGATCTGGCCTCTGGCGGGGCGCAGATGGAGAACAGCCGGGCG
CGGGAGGGGGCAAGAAAGCTGGCACTGGCCAACAGTTATAGAATCCAGGC
GTTGAGGCAACGGGCAGGGGTCCAGCTAACTATAGATCCTTGGGCTTTCC
TCCTCCCCTCCCCCATCCCTCCCTCCGTCCTTCGCTCCCATCTCCGCCTC
CTTTCCCTCACATCCTCGCTGTCAGAGAGGGAGACGACGAGAATTCTAAG
AGATTTGAACCAGGCAGTTCAAGCGCCTTTGGCAGCGATTGTTTTTCTTG
CCTCCTGTCCTGAGGTACCAGGAGGCGGAGGGAGGGAAGAAGGGAGGAGT
GGATTGTTCTTGGTTGCTTGTGCTCTATTCCATACGAGTCAGACGTGTCG
ATTTTACGCCTGCTTGATTCTACAACGGCTGGAAATGACCGAGGTGACCA
GGCCAGCAGTTAAGGGGATGAATGGCATGCTGCAATTGGCGTACCAAAGG
GTGAGGAGAGATATGACGGCAGCGACGTAAGGAAAAGAGGGACGAAATAT
GAGGAATGGATAAAATAGAATAAAATGCGTAAAATTTATATTTTGGAAAA
ATCAATGACGACATGATAATAAACAAGAGGAAAGACGATGGCGACTGAAG
CTGAAGAATTCTTCC
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protein sequence of jgi.p|Nanoce1779_2|602026

>mRNA_8437-protein ID=mRNA_8437-protein|Name=jgi.p|Nanoce1779_2|602026|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MDAMFMTRVQATVAAAEAAAPAPAAGLEAEWEGRVRVEEYLRGIFQAHTQ
SLLDLASGGAQMENSRAREGARKLALANSYRIQALRQRAGVQLTIDPWAF
LLPSPIPPSVLRSHLRLLSLTSSLSERETTRILRDLNQAVQAPLAAIVFL
ASCPEVPGGGGREEGRSGLFLVACALFHTSQTCRFYACLILQRLEMTEVT
RPAVKGMNGMLQLAYQRVRRDMTAAT*
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mRNA from alignment at scaffold_24:266484..267724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8437 ID=mRNA_8437|Name=jgi.p|Nanoce1779_2|602026|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_24:266484..267724- (Nannochloropsis oceanica)
GGCACTGTTACCTGCCTGGAGAAAAACGGGGAGGAGGAGGAACAGCAGCA
GCAGCAGCAGCAGAGGACCGAGTAGGTAAGGAGGGAGGAAGGGAGGGGGG
AAGGGGTCCGGCGCCTGAGTGGTTGGAGGGGGAGGCCTTATCATCGGAGA
TGGATGCAATGTTCATGACACGGGTGCAGGCAACTGTGGCGGCAGCAGAG
GCAGCAGCACCAGCGCCAGCAGCAGGGTTGGAAGCAGAGTGGGAGGGAAG
GGTAAGAGTGGAGGAGTATCTTCGCGGGATATTTCAAGCGCACACCCAGT
CGCTGCTTGATCTGGCCTCTGGCGGGGCGCAGATGGAGAACAGCCGGGCG
CGGGAGGGGGCAAGAAAGCTGGCACTGGCCAACAGTTATAGAATCCAGGC
GTTGAGGCAACGGGCAGGGGTCCAGGTAAGAAAGAGTGGAAGAGGGGGGG
GTTGGCAGGGGGGTGTCGTTGGCAGGGAAAGTTAGCAAGTCAGAAAGACA
ACCTTATTTGATTCGTTCGTTGGATTCAAGCCCTGAAGACAGTAATGTAT
TCGGGGTGTGGATGGAGAGAGGCAGGCGAGGGGGTTACGCAAGGGGATCA
ATAGGTTGTTATCCCTCCCTCCCTCCAACCCCTCTTCCAGTTATGTTTTC
CTTTGTTCACACATATAAAAATTCCCTCCGTCCCTTCTTTCACATAAACA
GCTAACTATAGATCCTTGGGCTTTCCTCCTCCCCTCCCCCATCCCTCCCT
CCGTCCTTCGCTCCCATCTCCGCCTCCTTTCCCTCACATCCTCGCTGTCA
GAGAGGGAGACGACGAGAATTCTAAGAGATTTGAACCAGGCAGTTCAAGC
GCCTTTGGCAGCGATTGTTTTTCTTGCCTCCTGTCCTGAGGTACCAGGAG
GCGGAGGGAGGGAAGAAGGGAGGAGTGGATTGTTCTTGGTTGCTTGTGCT
CTATTCCATACGAGTCAGACGTGTCGATTTTACGCCTGCTTGATTCTACA
ACGGCTGGAAATGACCGAGGTGACCAGGCCAGCAGTTAAGGGGATGAATG
GCATGCTGCAATTGGCGTACCAAAGGGTGAGGAGAGATATGACGGCAGCG
ACGTAAGGAAAAGAGGGACGAAATATGAGGAATGGATAAAATAGAATAAA
ATGCGTAAAATTTATATTTTGGAAAAATCAATGACGACATGATAATAAAC
AAGAGGAAAGACGATGGCGACTGAAGCTGAAGAATTCTTCC
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Coding sequence (CDS) from alignment at scaffold_24:266484..267724-

>mRNA_8437 ID=mRNA_8437|Name=jgi.p|Nanoce1779_2|602026|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_24:266484..267724- (Nannochloropsis oceanica)
CTAACTATAGATCCTTGGGCTTTCCTCCTCCCCTCCCCCATCCCTCCCTC
CGTCCTTCGCTCCCATCTCCGCCTCCTTTCCCTCACATCCTCGCTGTCAG
AGAGGGAGACGACGAGAATTCTAAGAGATTTGAACCAGGCAGTTCAAGCG
CCTTTGGCAGCGATTGTTTTTCTTGCCTCCTGTCCTGAGGTACCAGGAGG
CGGAGGGAGGGAAGAAGGGAGGAGTGGATTGTTCTTGGTTGCTTGTGCTC
TATTCCATACGAGTCAGACGTGTCGATTTTACGCCTGCTTGATTCTACAA
CGGCTGGAAATGACCGAGGTGACCAGGCCAGCAGTTAAGGGGATGAATGG
CATGCTGCAATTGGCGTACCAAAGGGTGAGGAGAGATATGACGGCAGCGA
CGTAAATGGATGCAATGTTCATGACACGGGTGCAGGCAACTGTGGCGGCA
GCAGAGGCAGCAGCACCAGCGCCAGCAGCAGGGTTGGAAGCAGAGTGGGA
GGGAAGGGTAAGAGTGGAGGAGTATCTTCGCGGGATATTTCAAGCGCACA
CCCAGTCGCTGCTTGATCTGGCCTCTGGCGGGGCGCAGATGGAGAACAGC
CGGGCGCGGGAGGGGGCAAGAAAGCTGGCACTGGCCAACAGTTATAGAAT
CCAGGCGTTGAGGCAACGGGCAGGGGTCCAGCTAACTATAGATCCTTGGG
CTTTCCTCCTCCCCTCCCCCATCCCTCCCTCCGTCCTTCGCTCCCATCTC
CGCCTCCTTTCCCTCACATCCTCGCTGTCAGAGAGGGAGACGACGAGAAT
TCTAAGAGATTTGAACCAGGCAGTTCAAGCGCCTTTGGCAGCGATTGTTT
TTCTTGCCTCCTGTCCTGAGGTACCAGGAGGCGGAGGGAGGGAAGAAGGG
AGGAGTGGATTGTTCTTGGTTGCTTGTGCTCTATTCCATACGAGTCAGAC
GTGTCGATTTTACGCCTGCTTGATTCTACAACGGCTGGAAATGACCGAGG
TGACCAGGCCAGCAGTTAAGGGGATGAATGGCATGCTGCAATTGGCGTAC
CAAAGGGTGAGGAGAGATATGACGGCAGCGACGTAAATGGATGCAATGTT
CATGACACGGGTGCAGGCAACTGTGGCGGCAGCAGAGGCAGCAGCACCAG
CGCCAGCAGCAGGGTTGGAAGCAGAGTGGGAGGGAAGGGTAAGAGTGGAG
GAGTATCTTCGCGGGATATTTCAAGCGCACACCCAGTCGCTGCTTGATCT
GGCCTCTGGCGGGGCGCAGATGGAGAACAGCCGGGCGCGGGAGGGGGCAA
GAAAGCTGGCACTGGCCAACAGTTATAGAATCCAGGCGTTGAGGCAACGG
GCAGGGGTCCAG
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Synonyms
Publications