jgi.p|Nanoce1779_2|602019, mRNA_8436 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602019
Unique Name	mRNA_8436
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2485
Alignment location	scaffold_24:263644..266319 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602105
Track	FilteredModels2
ProteinId	602019

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:263644..266319 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602019	gene_8436	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602019	mRNA_8436-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8436	CDS_8436	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:263644..266319+
coding sequence from alignment at scaffold_24:263644..266319+

mRNA sequence

>mRNA_8436 ID=mRNA_8436|Name=jgi.p|Nanoce1779_2|602019|organism=Nannochloropsis oceanica|type=mRNA|length=2485bp
CAGACACACTAATCATGTGCACGTGTACCTACTACTCAACCCCCCTCTGC
AGGCGCCGCGTCTTTGTCCGCCTGCACACGCGGCCCAGCGAGCCATGTGC
GACTCCTCCACCACCAATGCTTCGTCATCATCTTCGATTGTAGTGTCCAT
GGACGAAGATGAACACTACCTCTCGGACAGCGACTGTTCATACGATAGCC
GCAGGGAGAAGGAGATGGACGCGGCCAACATGCTGTCTTCCCTAAGAAAT
GTAAGTGGGGCTGAACTCGATCCCGTTTTGATCTATTCTATCTATCTGCC
TAATGGTGCTCTCGTTTGCAAATGTGTACCTTAAAACATATGAAGACAAA
TGGATGAAAACGGACGATGCTCTATCTTCTCATCCCTGCTTTCCGCGCCA
GCTGCTTGACTTTTCCCATAGCCTTCTTCTATCTAGCCCTCTACCAATGC
TTAATTTTAGCCTTTCCTTTACCTAATTGCATTTTTCATGCACTATTTGA
TCGGATTCTGTATTGACATAAAACACAGCTCGCCCTGCCCAAGCCTAAAA
AGGAGGTGTCTGACTGTATGCCCATCCCCGCGCGCCTTCCCTCTACTGCT
GGCGCCAAGCGCAAGTTGCTCGCTCTCATTCGCACTCCCGCTTCATCGAC
AGCGACACTCTTGCCAGCTGCAACTTTTATGCGGGAAATGAGCGGGGCCA
GCACCACGAGCGCCAGTAGCTTGGGAAGCAGCAGCAGTAGCTGCAGCAGC
AGCAGCAGCGGTAGTCTTGGTGAAGAAGGCAGCAGCACCAGCTGTGTGCG
CGCCTCAACCATTTCTGCTGCTTCTAACACTGCAGTAGCTACCCTTGTTG
GGTCTGATAACGGCACATCCAATCTTTCCTTTCCTCCTTCCACTGCTGCC
TCGGCTTTCGGCTACCCACGCAAGAGTGGGAGTAAATGGACTGGGAAGGA
AGATGACCAGCTCCGACGAGGGGTAGGCGTGGTGGGCGAGTGCCACTGGG
ACCTGATTGCTGCCCAGTTTTTGGAGGGGCGACGCAGTGCAATTCAGTGC
TCACATCGATGGCAGAAGGTTTTGAGGCCTGGGTTGATTAAAGGTCCTTG
GACGCAGGAGGAGGATGAGATTATCTTAGCGTGTCGACAGAACGGGGTGG
TTGAATGGAAGGAAATCGCCTTGCGGCTTCCGGGGAGGTTGGGGAAGCAA
TGCCGAGATCGGTGGTTGAATCATTTGGACCCGGCCATAAGTAGGCGGTA
TTGGACGGAGGAGGAGGACAGGGTGCTGGCGGAGGGCCGGGATATGTACG
GCAATGCGTGGGCCAAGATCGCTAGGTTGCTGCCAGGGCGCCCTGAGAAT
TCCATAAAAAATCGATGGTATTCTGCCCGTCGCGCTCAAGAGAGATCCTT
CGTCGCCACTCCCCAATGGGACCTGAAAGCGGAGAAAGCCGCCATCTTCA
ACTACTGTCTCTACTTCCAACCTCACGACTGCATCGACTCCTTCCTTCCC
TCCGTCACCTCAATTCTCCGCACCCAAGACCCGGAGGCCTACTCCGCCAC
CCTTGCCGACATCAACCGTCAAAAGCTTAATCGCCGTCTCACAGCTGGTC
TCAAGCGCGAAGCCAGCAAGTATCCCCCCACCTCCCCCCTCTGCCTCGCC
TTGCAGCGCGAAAAGCTCATTCAGCAAAAGCCCGCCCCGAAAAAAGTTCT
TCAAGCCCGCAAAGCTGCAAAGGAAGCCGCCGTCGCCGCCGCTGCCGCTG
CGAGTGCTGGCAGCTTTGCTGGTCTTGCCTCCTCCTCCCACTCCTCCTCC
TCTGCATCAACCTTATCCTCCTTCCCTTCGTTACCCACTACCACCTCTTC
CCTCACCAATTACTCCCTCTCTGCCTCCTCTTCCACCTCCTCCGTCCTGC
CCCACTCTGCTGTCCCTCCCTATATTCCGTCTACATCCTTTCATGTGTCC
CCACCAGCTAGCGAGCACATGACGAAGGTCATGTCTCTCCTTCAAGATGC
CCTTCGAGTGGAAACCCACCCGGCTCAACGCGACCTGCTCCGACAAGCCT
TCCGCGCCACAGTGCAATCAAATCGCGCTGCAGTCAATTACGTAGAGGGC
ATTCTAGGGGGCGGGTTTGCCAGATTAGACTTGGAGAAGCAGGAGGATAG
AGAGAGCTTGGTGGAAGCCTTGACATCGGCGGTCCGCCGTGGGTTGTTTG
TAAATTAAAAAACAAGGGGAGGAAGGGAGAGACGTACGAGAGGACTCGTG
TTGATCAAATCAAAAATGCACATGCGATGGCGATATTTATTTTTAGTGGC
ACTACTTTTTAGATCTTGAGAAGAAGTAGAGAGAATGTCTATCGATTTGT
GTGGGCAAGACGAAAGGAGGAAAGGAGGGAAGGAGGAAGGAAAGAGTAAG
GCAGGGGGGAAGGAAGGGAGGGAGGGCGGGAGACATTTTTTCCCCAATTC
TAATATATTATTTATTTATATATTTATATGAGTAG

protein sequence of jgi.p|Nanoce1779_2|602019

>mRNA_8436-protein ID=mRNA_8436-protein|Name=jgi.p|Nanoce1779_2|602019|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MPIPARLPSTAGAKRKLLALIRTPASSTATLLPAATFMREMSGASTTSAS
SLGSSSSSCSSSSSGSLGEEGSSTSCVRASTISAASNTAVATLVGSDNGT
SNLSFPPSTAASAFGYPRKSGSKWTGKEDDQLRRGVGVVGECHWDLIAAQ
FLEGRRSAIQCSHRWQKVLRPGLIKGPWTQEEDEIILACRQNGVVEWKEI
ALRLPGRLGKQCRDRWLNHLDPAISRRYWTEEEDRVLAEGRDMYGNAWAK
IARLLPGRPENSIKNRWYSARRAQERSFVATPQWDLKAEKAAIFNYCLYF
QPHDCIDSFLPSVTSILRTQDPEAYSATLADINRQKLNRRLTAGLKREAS
KYPPTSPLCLALQREKLIQQKPAPKKVLQARKAAKEAAVAAAAAASAGSF
AGLASSSHSSSSASTLSSFPSLPTTTSSLTNYSLSASSSTSSVLPHSAVP
PYIPSTSFHVSPPASEHMTKVMSLLQDALRVETHPAQRDLLRQAFRATVQ
SNRAAVNYVEGILGGGFARLDLEKQEDRESLVEALTSAVRRGLFVN*

mRNA from alignment at scaffold_24:263644..266319+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8436 ID=mRNA_8436|Name=jgi.p|Nanoce1779_2|602019|organism=Nannochloropsis oceanica|type=mRNA|length=2676bp|location=Sequence derived from alignment at scaffold_24:263644..266319+ (Nannochloropsis oceanica)
CAGACACACTAATCATGTGCACGTGTACCTACTACTCAACCCCCCTCTGC
AGGCGCCGCGTCTTTGTCCGCCTGCACACGCGGCCCAGCGAGCCATGTGC
GACTCCTCCACCACCAATGCTTCGTCATCATCTTCGATTGTAGTGTCCAT
GGACGAAGATGAACACTACCTCTCGGACAGCGACTGTTCATACGATAGCC
GCAGGGAGAAGGAGATGGACGCGGCCAACATGCTGTCTTCCCTAAGAAAT
GTAAGTGGGGCTGAACTCGATCCCGTTTTGATCTATTCTATCTATCTGCC
TAATGGTGCTCTCGTTTGCAAATGTGTACCTTAAAACATATGAAGACAAA
TGGATGAAAACGGACGATGCTCTATCTTCTCATCCCTGCTTTCCGCGCCA
GCTGCTTGACTTTTCCCATAGCCTTCTTCTATCTAGCCCTCTACCAATGC
TTAATTTTAGCCTTTCCTTTACCTAATTGCATTTTTCATGCACTATTTGA
TCGGATTCTGTATTGACATAAAACACAGCTCGCCCTGCCCAAGCCTAAAA
AGGAGGTGTCTGACTGTATGCCCATCCCCGCGCGCCTTCCCTCTACTGCT
GGCGCCAAGCGCAAGTTGCTCGCTCTCATTCGCACTCCCGCTTCATCGAC
AGCGACACTCTTGCCAGCTGCAACTTTTATGCGGGAAATGAGCGGGGCCA
GCACCACGAGCGCCAGTAGCTTGGGAAGCAGCAGCAGTAGCTGCAGCAGC
AGCAGCAGCGGTAGTCTTGGTGAAGAAGGCAGCAGCACCAGCTGTGTGCG
CGCCTCAACCATTTCTGCTGCTTCTAACACTGCAGTAGCTACCCTTGTTG
GGTCTGATAACGGCACATCCAATCTTTCCTTTCCTCCTTCCACTGCTGCC
TCGGCTTTCGGCTACCCACGCAAGAGTGGGAGTAAATGGACTGGGAAGGA
AGATGACCAGCTCCGACGAGGGGTAGGCGTGGTGGGCGAGTGCCACTGGG
ACCTGATTGCTGCCCAGTTTTTGGAGGGGCGACGCAGTGCAATTCAGTGC
TCACATCGATGGCAGAAGGTTTTGAGGCCTGGGTTGATTAAAGGTCCTTG
GACGCAGGAGGAGGATGAGATTATCTTAGCGTGTCGACAGAACGGGGTGG
TTGAATGGAAGGAAATCGCCTTGCGGCTTCCGGGGAGGTTGGGGAAGCAA
TGCCGAGATCGGTGGTTGAATCATTTGGACCCGGCCATAAGTAGGCGGTA
TTGGACGGAGGAGGAGGACAGGGTGCTGGCGGAGGGCCGGGATATGTACG
GCAATGCGTGGGCCAAGATCGCTAGGTTGCTGCCAGGGCGGTGAGTTTAT
GTCTTCCTTCTTGGGATGGGCTTTTTGGAGTCGATAATAAGGGAAGGAGA
TCGTTTGGTTGCGTATGTGATTTGTGCTCCATAAAGATACCTGGAGGATA
TGATGCCTGCGATGGCTGTATGGATGCACCGCTTCGAAGCAAAATACATT
TACCTCCTTTCTTCCTCCCTTCCTTCCACAGCCCTGAGAATTCCATAAAA
AATCGATGGTATTCTGCCCGTCGCGCTCAAGAGAGATCCTTCGTCGCCAC
TCCCCAATGGGACCTGAAAGCGGAGAAAGCCGCCATCTTCAACTACTGTC
TCTACTTCCAACCTCACGACTGCATCGACTCCTTCCTTCCCTCCGTCACC
TCAATTCTCCGCACCCAAGACCCGGAGGCCTACTCCGCCACCCTTGCCGA
CATCAACCGTCAAAAGCTTAATCGCCGTCTCACAGCTGGTCTCAAGCGCG
AAGCCAGCAAGTATCCCCCCACCTCCCCCCTCTGCCTCGCCTTGCAGCGC
GAAAAGCTCATTCAGCAAAAGCCCGCCCCGAAAAAAGTTCTTCAAGCCCG
CAAAGCTGCAAAGGAAGCCGCCGTCGCCGCCGCTGCCGCTGCGAGTGCTG
GCAGCTTTGCTGGTCTTGCCTCCTCCTCCCACTCCTCCTCCTCTGCATCA
ACCTTATCCTCCTTCCCTTCGTTACCCACTACCACCTCTTCCCTCACCAA
TTACTCCCTCTCTGCCTCCTCTTCCACCTCCTCCGTCCTGCCCCACTCTG
CTGTCCCTCCCTATATTCCGTCTACATCCTTTCATGTGTCCCCACCAGCT
AGCGAGCACATGACGAAGGTCATGTCTCTCCTTCAAGATGCCCTTCGAGT
GGAAACCCACCCGGCTCAACGCGACCTGCTCCGACAAGCCTTCCGCGCCA
CAGTGCAATCAAATCGCGCTGCAGTCAATTACGTAGAGGGCATTCTAGGG
GGCGGGTTTGCCAGATTAGACTTGGAGAAGCAGGAGGATAGAGAGAGCTT
GGTGGAAGCCTTGACATCGGCGGTCCGCCGTGGGTTGTTTGTAAATTAAA
AAACAAGGGGAGGAAGGGAGAGACGTACGAGAGGACTCGTGTTGATCAAA
TCAAAAATGCACATGCGATGGCGATATTTATTTTTAGTGGCACTACTTTT
TAGATCTTGAGAAGAAGTAGAGAGAATGTCTATCGATTTGTGTGGGCAAG
ACGAAAGGAGGAAAGGAGGGAAGGAGGAAGGAAAGAGTAAGGCAGGGGGG
AAGGAAGGGAGGGAGGGCGGGAGACATTTTTTCCCCAATTCTAATATATT
ATTTATTTATATATTTATATGAGTAG

Coding sequence (CDS) from alignment at scaffold_24:263644..266319+

>mRNA_8436 ID=mRNA_8436|Name=jgi.p|Nanoce1779_2|602019|organism=Nannochloropsis oceanica|type=CDS|length=3282bp|location=Sequence derived from alignment at scaffold_24:263644..266319+ (Nannochloropsis oceanica)
ATGCCCATCCCCGCGCGCCTTCCCTCTACTGCTGGCGCCAAGCGCAAGTT
GCTCGCTCTCATTCGCACTCCCGCTTCATCGACAGCGACACTCTTGCCAG
CTGCAACTTTTATGCGGGAAATGAGCGGGGCCAGCACCACGAGCGCCAGT
AGCTTGGGAAGCAGCAGCAGTAGCTGCAGCAGCAGCAGCAGCGGTAGTCT
TGGTGAAGAAGGCAGCAGCACCAGCTGTGTGCGCGCCTCAACCATTTCTG
CTGCTTCTAACACTGCAGTAGCTACCCTTGTTGGGTCTGATAACGGCACA
TCCAATCTTTCCTTTCCTCCTTCCACTGCTGCCTCGGCTTTCGGCTACCC
ACGCAAGAGTGGGAGTAAATGGACTGGGAAGGAAGATGACCAGCTCCGAC
GAGGGGTAGGCGTGGTGGGCGAGTGCCACTGGGACCTGATTGCTGCCCAG
TTTTTGGAGGGGCGACGCAGTGCAATTCAGTGCTCACATCGATGGCAGAA
GGTTTTGAGGCCTGGGTTGATTAAAGGTCCTTGGACGCAGGAGGAGGATG
AGATTATCTTAGCGTGTCGACAGAACGGGGTGGTTGAATGGAAGGAAATC
GCCTTGCGGCTTCCGGGGAGGTTGGGGAAGCAATGCCGAGATCGGTGGTT
GAATCATTTGGACCCGGCCATAAGTAGGCGGTATTGGACGGAGGAGGAGG
ACAGGGTGCTGGCGGAGGGCCGGGATATGTACGGCAATGCGTGGGCCAAG
ATCGCTAGGTTGCTGCCAGGGCGCCCTGAGAATTCCATAAAAAATCGATG
GTATTCTGCCCGTCGCGCTCAAGAGAGATCCTTCGTCGCCACTCCCCAAT
GGGACCTGAAAGCGGAGAAAGCCGCCATCTTCAACTACTGTCTCTACTTC
CAACCTCACGACTGCATCGACTCCTTCCTTCCCTCCGTCACCTCAATTCT
CCGCACCCAAGACCCGGAGGCCTACTCCGCCACCCTTGCCGACATCAACC
GTCAAAAGCTTAATCGCCGTCTCACAGCTGGTCTCAAGCGCGAAGCCAGC
AAGTATCCCCCCACCTCCCCCCTCTGCCTCGCCTTGCAGCGCGAAAAGCT
CATTCAGCAAAAGCCCGCCCCGAAAAAAGTTCTTCAAGCCCGCAAAGCTG
CAAAGGAAGCCGCCGTCGCCGCCGCTGCCGCTGCGAGTGCTGGCAGCTTT
GCTGGTCTTGCCTCCTCCTCCCACTCCTCCTCCTCTGCATCAACCTTATC
CTCCTTCCCTTCGTTACCCACTACCACCTCTTCCCTCACCAATTACTCCC
TCTCTGCCTCCTCTTCCACCTCCTCCGTCCTGCCCCACTCTGCTGTCCCT
CCCTATATTCCGTCTACATCCTTTCATGTGTCCCCACCAGCTAGCGAGCA
CATGACGAAGGTCATGTCTCTCCTTCAAGATGCCCTTCGAGTGGAAACCC
ACCCGGCTCAACGCGACCTGCTCCGACAAGCCTTCCGCGCCACAGTGCAA
TCAAATCGCGCTGCAGTCAATTACGTAGAGGGCATTCTAGGGGGCGGGTT
TGCCAGATTAGACTTGGAGAAGCAGGAGGATAGAGAGAGCTTGGTGGAAG
CCTTGACATCGGCGGTCCGCCGTGGGTTGTTTGTAAATTAAATGCCCATC
CCCGCGCGCCTTCCCTCTACTGCTGGCGCCAAGCGCAAGTTGCTCGCTCT
CATTCGCACTCCCGCTTCATCGACAGCGACACTCTTGCCAGCTGCAACTT
TTATGCGGGAAATGAGCGGGGCCAGCACCACGAGCGCCAGTAGCTTGGGA
AGCAGCAGCAGTAGCTGCAGCAGCAGCAGCAGCGGTAGTCTTGGTGAAGA
AGGCAGCAGCACCAGCTGTGTGCGCGCCTCAACCATTTCTGCTGCTTCTA
ACACTGCAGTAGCTACCCTTGTTGGGTCTGATAACGGCACATCCAATCTT
TCCTTTCCTCCTTCCACTGCTGCCTCGGCTTTCGGCTACCCACGCAAGAG
TGGGAGTAAATGGACTGGGAAGGAAGATGACCAGCTCCGACGAGGGGTAG
GCGTGGTGGGCGAGTGCCACTGGGACCTGATTGCTGCCCAGTTTTTGGAG
GGGCGACGCAGTGCAATTCAGTGCTCACATCGATGGCAGAAGGTTTTGAG
GCCTGGGTTGATTAAAGGTCCTTGGACGCAGGAGGAGGATGAGATTATCT
TAGCGTGTCGACAGAACGGGGTGGTTGAATGGAAGGAAATCGCCTTGCGG
CTTCCGGGGAGGTTGGGGAAGCAATGCCGAGATCGGTGGTTGAATCATTT
GGACCCGGCCATAAGTAGGCGGTATTGGACGGAGGAGGAGGACAGGGTGC
TGGCGGAGGGCCGGGATATGTACGGCAATGCGTGGGCCAAGATCGCTAGG
TTGCTGCCAGGGCGCCCTGAGAATTCCATAAAAAATCGATGGTATTCTGC
CCGTCGCGCTCAAGAGAGATCCTTCGTCGCCACTCCCCAATGGGACCTGA
AAGCGGAGAAAGCCGCCATCTTCAACTACTGTCTCTACTTCCAACCTCAC
GACTGCATCGACTCCTTCCTTCCCTCCGTCACCTCAATTCTCCGCACCCA
AGACCCGGAGGCCTACTCCGCCACCCTTGCCGACATCAACCGTCAAAAGC
TTAATCGCCGTCTCACAGCTGGTCTCAAGCGCGAAGCCAGCAAGTATCCC
CCCACCTCCCCCCTCTGCCTCGCCTTGCAGCGCGAAAAGCTCATTCAGCA
AAAGCCCGCCCCGAAAAAAGTTCTTCAAGCCCGCAAAGCTGCAAAGGAAG
CCGCCGTCGCCGCCGCTGCCGCTGCGAGTGCTGGCAGCTTTGCTGGTCTT
GCCTCCTCCTCCCACTCCTCCTCCTCTGCATCAACCTTATCCTCCTTCCC
TTCGTTACCCACTACCACCTCTTCCCTCACCAATTACTCCCTCTCTGCCT
CCTCTTCCACCTCCTCCGTCCTGCCCCACTCTGCTGTCCCTCCCTATATT
CCGTCTACATCCTTTCATGTGTCCCCACCAGCTAGCGAGCACATGACGAA
GGTCATGTCTCTCCTTCAAGATGCCCTTCGAGTGGAAACCCACCCGGCTC
AACGCGACCTGCTCCGACAAGCCTTCCGCGCCACAGTGCAATCAAATCGC
GCTGCAGTCAATTACGTAGAGGGCATTCTAGGGGGCGGGTTTGCCAGATT
AGACTTGGAGAAGCAGGAGGATAGAGAGAGCTTGGTGGAAGCCTTGACAT
CGGCGGTCCGCCGTGGGTTGTTTGTAAATTAA

Synonyms

Publications