jgi.p|Nanoce1779_2|196115, mRNA_8435 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|196115
Unique NamemRNA_8435
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length950
Alignment locationscaffold_24:260067..261186 -

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Properties
Property NameValue
TranscriptId196201
TrackFilteredModels2
ProteinId196115
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:260067..261186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|196115gene_8435Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|196115mRNA_8435-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8435CDS_8435Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8435 ID=mRNA_8435|Name=jgi.p|Nanoce1779_2|196115|organism=Nannochloropsis oceanica|type=mRNA|length=950bp
ACGTCTTCACGTCCATCTGAGTATGATAAGTAGAAATTTGGACCGGGGGA
GGACTATCGGGGAGCTGGAAAGTAGAGATTCCTCCTCTTGAATATGGTTC
TCAAGAACAAATGATAGTATTGAATGTCCATGAGCTCGTACCCTCACCTT
TTCTCTCCCTCATTTCCTTCCTTCCCTTTCCCTTCCCGACACTCAGGTCG
ATTAATTATCCTGCCGAAGAAGAGCTGGCATGTCTGGAACCAAGATAACC
GTGAGAAAGTGCTGCGAGATGAGCGGCTGCACCGGGAGGAGCAAGATGAG
CGGGCAGAGCAGCAACGGACTGTGGACCGCGAACACAGGCTGGACGTGTT
GCGGAGACGGAAGCGGATGCGGGAAGAAAGGCTCGACCAGGAAGATGATG
CATCAATAGTAGCGGCGGCAGCAGCAACAGCAACAGTGATGAAAGCCGCC
GTTGTTGTGGCAGAATCAGATTCAGCAGCGGCGTCAGGAAGGAAACAGCG
GGCATTGAGTTTGAAGGATGAGGAGACTGTTGATGCCGTAGCAAAGGGCG
CAGCGCAAGGATTGGACAACAAAGGCCTAGCTATTCCCCCTGATAAAGTG
GGATATATTGAAGGGCAACAACATCAGGGCCATGTAAACCTCTTCGGGCA
TTTCGCTGAGCAACTTGGTATGTGCATCTTTTGCCGCTGAACGATTGGGG
AGTGCGTGTGATATGGGGACTATCCCAGCTTCCCCGTCATGCGGGGCGGG
CTTATTTTGGTGCTCAAAATATGATAGATGGAGATGTCTTTATGCCGGTG
ACAAGGCTTGTTATAGTGATTAAAACCCCAAAAAAGTAAAAAGAGCAAAA
AACTTACATAACTTTCTGTATAGTCCGTTTAGCACACGTCCCTCTACTAT
AGACGCTCTTGACCCTAATACCATTTGTCACTCACACAATATACAGACAG
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protein sequence of jgi.p|Nanoce1779_2|196115

>mRNA_8435-protein ID=mRNA_8435-protein|Name=jgi.p|Nanoce1779_2|196115|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MSMSSYPHLFSPSFPSFPFPSRHSGRLIILPKKSWHVWNQDNREKVLRDE
RLHREEQDERAEQQRTVDREHRLDVLRRRKRMREERLDQEDDASIVAAAA
ATATVMKAAVVVAESDSAAASGRKQRALSLKDEETVDAVAKGAAQGLDNK
GLAIPPDKVGYIEGQQHQGHVNLFGHFAEQLGMCIFCR*
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mRNA from alignment at scaffold_24:260067..261186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8435 ID=mRNA_8435|Name=jgi.p|Nanoce1779_2|196115|organism=Nannochloropsis oceanica|type=mRNA|length=1120bp|location=Sequence derived from alignment at scaffold_24:260067..261186- (Nannochloropsis oceanica)
ACGTCTTCACGTCCATCTGAGTATGATAAGTAGAAATTTGGACCGGGGGA
GGACTATCGGGGAGCTGGAAAGTAGAGATTCCTCCTCTTGAATATGGTTC
TCAAGAACAAATGATAGTATTGAATGTCCATGAGCTCGTACCCTCACCTT
TTCTCTCCCTCATTTCCTTCCTTCCCTTTCCCTTCCCGACACTCAGGTCG
ATTAATTATCCTGCCGAAGAAGAGCTGGCATGTCTGGAACCAAGATAACC
GTGAGAAAGTGCTGCGAGATGAGCGGCTGCACCGGGAGGAGCAAGATGAG
CGGGCAGAGCAGCAACGGTACGTGAGAGTGAGACAGGGACGGTGGGAAGG
AGAAGGAAGGGGATTTTGTACTTCAAAACCCGCCAAGACCCGCGAGCGCC
CTTTTTGCGGTATTTGTCCACAGATCAGTACTTTCCCCCTTTCCTCTGCC
ATTATCACCAACATCCTGCTTCGTCCCCTCATGTTAGGACTGTGGACCGC
GAACACAGGCTGGACGTGTTGCGGAGACGGAAGCGGATGCGGGAAGAAAG
GCTCGACCAGGAAGATGATGCATCAATAGTAGCGGCGGCAGCAGCAACAG
CAACAGTGATGAAAGCCGCCGTTGTTGTGGCAGAATCAGATTCAGCAGCG
GCGTCAGGAAGGAAACAGCGGGCATTGAGTTTGAAGGATGAGGAGACTGT
TGATGCCGTAGCAAAGGGCGCAGCGCAAGGATTGGACAACAAAGGCCTAG
CTATTCCCCCTGATAAAGTGGGATATATTGAAGGGCAACAACATCAGGGC
CATGTAAACCTCTTCGGGCATTTCGCTGAGCAACTTGGTATGTGCATCTT
TTGCCGCTGAACGATTGGGGAGTGCGTGTGATATGGGGACTATCCCAGCT
TCCCCGTCATGCGGGGCGGGCTTATTTTGGTGCTCAAAATATGATAGATG
GAGATGTCTTTATGCCGGTGACAAGGCTTGTTATAGTGATTAAAACCCCA
AAAAAGTAAAAAGAGCAAAAAACTTACATAACTTTCTGTATAGTCCGTTT
AGCACACGTCCCTCTACTATAGACGCTCTTGACCCTAATACCATTTGTCA
CTCACACAATATACAGACAG
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Coding sequence (CDS) from alignment at scaffold_24:260067..261186-

>mRNA_8435 ID=mRNA_8435|Name=jgi.p|Nanoce1779_2|196115|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_24:260067..261186- (Nannochloropsis oceanica)
GACTGTGGACCGCGAACACAGGCTGGACGTGTTGCGGAGACGGAAGCGGA
TGCGGGAAGAAAGGCTCGACCAGGAAGATGATGCATCAATAGTAGCGGCG
GCAGCAGCAACAGCAACAGTGATGAAAGCCGCCGTTGTTGTGGCAGAATC
AGATTCAGCAGCGGCGTCAGGAAGGAAACAGCGGGCATTGAGTTTGAAGG
ATGAGGAGACTGTTGATGCCGTAGCAAAGGGCGCAGCGCAAGGATTGGAC
AACAAAGGCCTAGCTATTCCCCCTGATAAAGTGGGATATATTGAAGGGCA
ACAACATCAGGGCCATGTAAACCTCTTCGGGCATTTCGCTGAGCAACTTG
GTATGTGCATCTTTTGCCGCTGAATGTCCATGAGCTCGTACCCTCACCTT
TTCTCTCCCTCATTTCCTTCCTTCCCTTTCCCTTCCCGACACTCAGGTCG
ATTAATTATCCTGCCGAAGAAGAGCTGGCATGTCTGGAACCAAGATAACC
GTGAGAAAGTGCTGCGAGATGAGCGGCTGCACCGGGAGGAGCAAGATGAG
CGGGCAGAGCAGCAACGGACTGTGGACCGCGAACACAGGCTGGACGTGTT
GCGGAGACGGAAGCGGATGCGGGAAGAAAGGCTCGACCAGGAAGATGATG
CATCAATAGTAGCGGCGGCAGCAGCAACAGCAACAGTGATGAAAGCCGCC
GTTGTTGTGGCAGAATCAGATTCAGCAGCGGCGTCAGGAAGGAAACAGCG
GGCATTGAGTTTGAAGGATGAGGAGACTGTTGATGCCGTAGCAAAGGGCG
CAGCGCAAGGATTGGACAACAAAGGCCTAGCTATTCCCCCTGATAAAGTG
GGATATATTGAAGGGCAACAACATCAGGGCCATGTAAACCTCTTCGGGCA
TTTCGCTGAGCAACTTGGTATGTGCATCTTTTGCCGCTGAATGTCCATGA
GCTCGTACCCTCACCTTTTCTCTCCCTCATTTCCTTCCTTCCCTTTCCCT
TCCCGACACTCAGGTCGATTAATTATCCTGCCGAAGAAGAGCTGGCATGT
CTGGAACCAAGATAACCGTGAGAAAGTGCTGCGAGATGAGCGGCTGCACC
GGGAGGAGCAAGATGAGCGGGCAGAGCAGCAACG
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Synonyms
Publications