jgi.p|Nanoce1779_2|602005, mRNA_8434 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602005
Unique NamemRNA_8434
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1208
Alignment locationscaffold_24:259084..260291 -

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Properties
Property NameValue
TranscriptId602091
TrackFilteredModels2
ProteinId602005
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:259084..260291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602005gene_8434Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602005mRNA_8434-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8434CDS_8434Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8434 ID=mRNA_8434|Name=jgi.p|Nanoce1779_2|602005|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
CAGCTTCCCCGTCATGCGGGGCGGGCTTATTTTGGTGCTCAAAATATGAT
AGATGGAGATGTCTTTATGCCGGTGACAAGGCTTGTTATAGTGATTAAAA
CCCCAAAAAAGTAAAAAGAGCAAAAAACTTACATAACTTTCTGTATAGTC
CGTTTAGCACACGTCCCTCTACTATAGACGCTCTTGACCCTAATACCATT
TGTCACTCACACAATATACAGACAGAAAGGTGTGCAACAAGTATTACGCT
CAAGAGCAGGCTGAAAAGGAGCTACGGAAGAAGCGTGCCGAAGGTATAGC
TCCCTGGGGTTTCGACGACGTAAAGGCGCCAAAACAATGGTATGAGAAAG
GCTCCTCATCGTCATCATCGACCCCAAATCCAACCCCCAATTCGGCGTCT
GCTGCTGCTTGCAATCTCTCGTCATCCACTGCTGCTGCAGCTAGGCGTGA
CGGCAAATGTGTTCCGGAAGAGAAGGCACAACGGATGCAACGGCGGGCGG
AGCGCGAGAGGGAGCTGGCGGACCCCATGACTGTCTTCATTGGCAGCGCA
GTTGCAAATACTGCCAGCGGCAGTGCCTTCACAGGACGTATCTCTCGCTT
TAATCCGGCTTATGTTGCTCCTCCTCCAGTCACCAGTCATCATCATTCGT
CCCCAATATCTTCGTCTTTATCCCTATCCTCCTCCGACCACGACGGTAGG
CACAGTCGGCGGCGACAATCTCGCGAAATGAGAAAGAAAAAGGAGAGGCG
ACCCAAAAGGGAGAAGGCGAAGAGGGAGGAGAAGAAGAAGGAGAAGAAGA
AGGGGGAAAAGGGCCGCAGTCGTAAAAAGTGGAAGGACAGCAATCGGAAA
AGAGACAGGGCCTCACTGTCTTTTTCCCCGTCCGCGGCTGATTCATGTCG
TAAGGATACCAAGCCATCCCCTTCTTCCCCTTTTTCGGCTAGTCTTGGGG
CCCTTCGCCAACGCCGGTTGGAGCGAGAACAAAATGAGCACCGCAAAGCT
GTGCATCTGCTCGCAGCACGCCAACGAGCTGGTCTTTCTTATCCTACTGA
CGCATCTCCCATGCTTGATCAATCTGAGAAAGTGGAAATGGATGATAGAA
AACGCGACTACAATAGCCGCTTCTTTCCCTCTCGATGAATATAAGCCTGA
CCAAAAAAGGAAGAAAGTTGCCTGTATCCATGAAGAAAATTTATACGTTG
GAACGACG
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protein sequence of jgi.p|Nanoce1779_2|602005

>mRNA_8434-protein ID=mRNA_8434-protein|Name=jgi.p|Nanoce1779_2|602005|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MQRRAERERELADPMTVFIGSAVANTASGSAFTGRISRFNPAYVAPPPVT
SHHHSSPISSSLSLSSSDHDGRHSRRRQSREMRKKKERRPKREKAKREEK
KKEKKKGEKGRSRKKWKDSNRKRDRASLSFSPSAADSCRKDTKPSPSSPF
SASLGALRQRRLEREQNEHRKAVHLLAARQRAGLSYPTDASPMLDQSEKV
EMDDRKRDYNSRFFPSR*
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mRNA from alignment at scaffold_24:259084..260291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8434 ID=mRNA_8434|Name=jgi.p|Nanoce1779_2|602005|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp|location=Sequence derived from alignment at scaffold_24:259084..260291- (Nannochloropsis oceanica)
CAGCTTCCCCGTCATGCGGGGCGGGCTTATTTTGGTGCTCAAAATATGAT
AGATGGAGATGTCTTTATGCCGGTGACAAGGCTTGTTATAGTGATTAAAA
CCCCAAAAAAGTAAAAAGAGCAAAAAACTTACATAACTTTCTGTATAGTC
CGTTTAGCACACGTCCCTCTACTATAGACGCTCTTGACCCTAATACCATT
TGTCACTCACACAATATACAGACAGAAAGGTGTGCAACAAGTATTACGCT
CAAGAGCAGGCTGAAAAGGAGCTACGGAAGAAGCGTGCCGAAGGTATAGC
TCCCTGGGGTTTCGACGACGTAAAGGCGCCAAAACAATGGTATGAGAAAG
GCTCCTCATCGTCATCATCGACCCCAAATCCAACCCCCAATTCGGCGTCT
GCTGCTGCTTGCAATCTCTCGTCATCCACTGCTGCTGCAGCTAGGCGTGA
CGGCAAATGTGTTCCGGAAGAGAAGGCACAACGGATGCAACGGCGGGCGG
AGCGCGAGAGGGAGCTGGCGGACCCCATGACTGTCTTCATTGGCAGCGCA
GTTGCAAATACTGCCAGCGGCAGTGCCTTCACAGGACGTATCTCTCGCTT
TAATCCGGCTTATGTTGCTCCTCCTCCAGTCACCAGTCATCATCATTCGT
CCCCAATATCTTCGTCTTTATCCCTATCCTCCTCCGACCACGACGGTAGG
CACAGTCGGCGGCGACAATCTCGCGAAATGAGAAAGAAAAAGGAGAGGCG
ACCCAAAAGGGAGAAGGCGAAGAGGGAGGAGAAGAAGAAGGAGAAGAAGA
AGGGGGAAAAGGGCCGCAGTCGTAAAAAGTGGAAGGACAGCAATCGGAAA
AGAGACAGGGCCTCACTGTCTTTTTCCCCGTCCGCGGCTGATTCATGTCG
TAAGGATACCAAGCCATCCCCTTCTTCCCCTTTTTCGGCTAGTCTTGGGG
CCCTTCGCCAACGCCGGTTGGAGCGAGAACAAAATGAGCACCGCAAAGCT
GTGCATCTGCTCGCAGCACGCCAACGAGCTGGTCTTTCTTATCCTACTGA
CGCATCTCCCATGCTTGATCAATCTGAGAAAGTGGAAATGGATGATAGAA
AACGCGACTACAATAGCCGCTTCTTTCCCTCTCGATGAATATAAGCCTGA
CCAAAAAAGGAAGAAAGTTGCCTGTATCCATGAAGAAAATTTATACGTTG
GAACGACG
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Coding sequence (CDS) from alignment at scaffold_24:259084..260291-

>mRNA_8434 ID=mRNA_8434|Name=jgi.p|Nanoce1779_2|602005|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_24:259084..260291- (Nannochloropsis oceanica)
ATGCAACGGCGGGCGGAGCGCGAGAGGGAGCTGGCGGACCCCATGACTGT
CTTCATTGGCAGCGCAGTTGCAAATACTGCCAGCGGCAGTGCCTTCACAG
GACGTATCTCTCGCTTTAATCCGGCTTATGTTGCTCCTCCTCCAGTCACC
AGTCATCATCATTCGTCCCCAATATCTTCGTCTTTATCCCTATCCTCCTC
CGACCACGACGGTAGGCACAGTCGGCGGCGACAATCTCGCGAAATGAGAA
AGAAAAAGGAGAGGCGACCCAAAAGGGAGAAGGCGAAGAGGGAGGAGAAG
AAGAAGGAGAAGAAGAAGGGGGAAAAGGGCCGCAGTCGTAAAAAGTGGAA
GGACAGCAATCGGAAAAGAGACAGGGCCTCACTGTCTTTTTCCCCGTCCG
CGGCTGATTCATGTCGTAAGGATACCAAGCCATCCCCTTCTTCCCCTTTT
TCGGCTAGTCTTGGGGCCCTTCGCCAACGCCGGTTGGAGCGAGAACAAAA
TGAGCACCGCAAAGCTGTGCATCTGCTCGCAGCACGCCAACGAGCTGGTC
TTTCTTATCCTACTGACGCATCTCCCATGCTTGATCAATCTGAGAAAGTG
GAAATGGATGATAGAAAACGCGACTACAATAGCCGCTTCTTTCCCTCTCG
ATGA
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Synonyms
Publications