jgi.p|Nanoce1779_2|601995, mRNA_8430 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601995
Unique Name	mRNA_8430
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2502
Alignment location	scaffold_24:245193..247694 -

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Properties


Property Name	Value
TranscriptId	602081
Track	FilteredModels2
ProteinId	601995

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:245193..247694 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601995	gene_8430	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601995	mRNA_8430-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8430	CDS_8430	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:245193..247694-
coding sequence from alignment at scaffold_24:245193..247694-

mRNA sequence

>mRNA_8430 ID=mRNA_8430|Name=jgi.p|Nanoce1779_2|601995|organism=Nannochloropsis oceanica|type=mRNA|length=2502bp
GTCGAGACGGAGTGGTTTCCCCAGAACAAGCTCTTAATGAGATATAATCT
TTTCCTACCACACGATAACTTGACTTGAATTGGATTCACTTGCCTCTTTA
TGCTACATATTCACGAAAGGGATTTTAATGCCGGATCGGGCCTACTCTGT
GTCGTGCAGAGTCTTGAATCCCCATGGACAGGAAGCGCGTGAATCATCTT
GGGGCTTCAGTCTGTCTGCAAACCGCCCAGGAGCCGTTGGACAAACGTTT
GCTGGTGGCCGCCCTGGTGGCGAGTAGCGAGTTTATGTATTTATTTGACC
AGCCAGCCACCAATCGCACCAATTATATGAATGGACTCCTTTGATCGTGA
AATTTCCACATCAGAAGCCCAGGGCATGAGTGCGGCTATTTTGGTGTCGT
TATATATATAGGTAGGAAGGGACATCCTGTCTTAAACCGTCAGAAAATGT
CATGAATAAATGTATGATCTTCAACGCGTGGAATTAAACATACTAGGACA
GGCGGATCTTATGGCTTATGCTGCGTGGCTTGAGAGAATGCGGGTGTACC
ATTACCTGCGTTAGTCAATCGATTCATGCCTCACCTCTTTCTGACCCCTT
CTGCATCTCCTTCCAATCTTCTACACAATCAGAACGCTAGAAAGTCTCAT
GTCTCATCTCTCCTCCTCGAGTCACTCTTCCGTATACTTTACAAGCGATC
ATGGACCGACAAGCCGCACTCCGTCCCCGCGGTCCCCCCGGTCCCCGGAA
TCGCCTCTGTATTACCGAGGCCTGCGGATCGAGACAGCTCTCCCCTTGTC
TGTCCAGCTTGACCTCCCAGTCTCTCCAGGAAAAAGGCAAGGACATGGGC
TATCGGCACCCACGATACCGTCCGCTTTGGGCGCAAGCGCGTCTTCATTG
GTTAGGACGACGGGACCGGGCTTTGTAGCTATGTTCTCAGGACCGCAGTA
TAAAAGTTCTGATCATGTGGTGGGATATGCCCCGGCAGGAACGCGGAGCC
GCTGCCGGGTTTGTGGCACTGGCTTCACGGCTTATAAAATGCGATTCGGG
ACATTTTTTGCTCATGTGGAGGGGTTCATATTCCTTCGCTGGCACCATCT
GCGGTGTCTTCGGCCTCCCTCCAGCCTCGAGGACGTGACAAAGCTATCGG
GCTTTGGTGATCTGCAGCCTTCAGATATGCAGTTAGTACAAGATTGGGTC
GACGGTGTCAACTTTACTCCTGCCTCCCCGCCCCTCTCTCCGGGGTCTTC
CTTCCGGACCAGCCCGTCCTTCAAGGGCGGCGTCACCGGTCTTCGGGTGG
ACAGCCCCCTGTCGCGACACACGATCGGCAACACGAATGACGAAATTTGT
AGCAGCACCACCAGCATGACCAGCATGATGAGCGATGATAATGCGGAGTA
CTGGCTGGGAAATAAGGGACCAGGCCGTCCTTCCCCGCGTTCCCCTCCTT
CCCCAACCTCGCCCTCCCAGTCGCGCCGCATTGTTGAACTGGCCAGCACT
GCTAGCGCTTCCACATCGATCGTACGATCCCGTCCTGGTATAGGATTGAC
GATTGACACGGCTCTGACTACCACTTACTTCACACCCATCACTTCCCCAT
TGGGAACCTCGCCCACAGCCCGTACGTACCGTTATCAACCCACCTGCAGC
GGGAAAGGGAAAAGAGGAGATAATTGTAGTGGAAGTGGTGTACTCTCCTC
CTCTCCTCCACGGAGCGGCTTTCTGATTGACAATAAGCTGCCCTCCCCGC
GAAATATGTGTCGAAGCCGCAATATGAAGAGCCGGGCCAAGAGCCCCTTC
TTCGCCTGTACGAGACGGTACGACAAGTCAGGTGGAGGTGGAAAATTGGT
TGAGTTGACCGCGGAGGAGAAGAAAATCAAGCTGGAATCCGACAGACTCC
ACCGGGCTGCAAGAGTGGAAAGACAGCGACGACGGAGCAAGACATTGTGA
TGTAAATAGATGACATACATGGTCCAAGCGAGAATTCCAAAATAAGAACT
ATAAATTGCATAAATGCATAGGGCAGCAAAATCAAACTTTCAAGGCAGGA
AAGGAGGCGAAAGATACGATTATATTGGATTGAAGGTCGGTCTTAGATAT
TGTATAATTCTTTGGAAAAGCGTGATGTCGAGGAAGAGGGATAGGGTCCA
GTTGTGTTGTGGAGTGGAAATAGCGTACACGGTACATAGAGAACACACTA
TCCAAAGGTCGGAAGAGGAAAAAGAAAGAATTACCACCTGCAGCCCCATA
TTTGCTTCTGGGTCAGATAAATAGACACACTTTGTTCTTCTTGGCTTTTT
TTACACTTCTCGTTGGAACGATCAATAAAATACCTCCCGTCCTAAAACTT
AACTGGCCTCATAGGCCATTTTCCATCCTCTTTTTCTCCATCTCGCTCTC
ACGACACACCCTTCCCCAAAAATGCCTCCTTTCTTGATCTCTTTTTTTCC
TTCTCATCTTTTCTCAGCCCTCCATCACATGCCGCCGCCCGTGTCCAGGC
CC

protein sequence of jgi.p|Nanoce1779_2|601995

>mRNA_8430-protein ID=mRNA_8430-protein|Name=jgi.p|Nanoce1779_2|601995|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MSHLSSSSHSSVYFTSDHGPTSRTPSPRSPRSPESPLYYRGLRIETALPL
SVQLDLPVSPGKRQGHGLSAPTIPSALGASASSLVRTTGPGFVAMFSGPQ
YKSSDHVVGYAPAGTRSRCRVCGTGFTAYKMRFGTFFAHVEGFIFLRWHH
LRCLRPPSSLEDVTKLSGFGDLQPSDMQLVQDWVDGVNFTPASPPLSPGS
SFRTSPSFKGGVTGLRVDSPLSRHTIGNTNDEICSSTTSMTSMMSDDNAE
YWLGNKGPGRPSPRSPPSPTSPSQSRRIVELASTASASTSIVRSRPGIGL
TIDTALTTTYFTPITSPLGTSPTARTYRYQPTCSGKGKRGDNCSGSGVLS
SSPPRSGFLIDNKLPSPRNMCRSRNMKSRAKSPFFACTRRYDKSGGGGKL
VELTAEEKKIKLESDRLHRAARVERQRRRSKTL*

mRNA from alignment at scaffold_24:245193..247694-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8430 ID=mRNA_8430|Name=jgi.p|Nanoce1779_2|601995|organism=Nannochloropsis oceanica|type=mRNA|length=2502bp|location=Sequence derived from alignment at scaffold_24:245193..247694- (Nannochloropsis oceanica)
GTCGAGACGGAGTGGTTTCCCCAGAACAAGCTCTTAATGAGATATAATCT
TTTCCTACCACACGATAACTTGACTTGAATTGGATTCACTTGCCTCTTTA
TGCTACATATTCACGAAAGGGATTTTAATGCCGGATCGGGCCTACTCTGT
GTCGTGCAGAGTCTTGAATCCCCATGGACAGGAAGCGCGTGAATCATCTT
GGGGCTTCAGTCTGTCTGCAAACCGCCCAGGAGCCGTTGGACAAACGTTT
GCTGGTGGCCGCCCTGGTGGCGAGTAGCGAGTTTATGTATTTATTTGACC
AGCCAGCCACCAATCGCACCAATTATATGAATGGACTCCTTTGATCGTGA
AATTTCCACATCAGAAGCCCAGGGCATGAGTGCGGCTATTTTGGTGTCGT
TATATATATAGGTAGGAAGGGACATCCTGTCTTAAACCGTCAGAAAATGT
CATGAATAAATGTATGATCTTCAACGCGTGGAATTAAACATACTAGGACA
GGCGGATCTTATGGCTTATGCTGCGTGGCTTGAGAGAATGCGGGTGTACC
ATTACCTGCGTTAGTCAATCGATTCATGCCTCACCTCTTTCTGACCCCTT
CTGCATCTCCTTCCAATCTTCTACACAATCAGAACGCTAGAAAGTCTCAT
GTCTCATCTCTCCTCCTCGAGTCACTCTTCCGTATACTTTACAAGCGATC
ATGGACCGACAAGCCGCACTCCGTCCCCGCGGTCCCCCCGGTCCCCGGAA
TCGCCTCTGTATTACCGAGGCCTGCGGATCGAGACAGCTCTCCCCTTGTC
TGTCCAGCTTGACCTCCCAGTCTCTCCAGGAAAAAGGCAAGGACATGGGC
TATCGGCACCCACGATACCGTCCGCTTTGGGCGCAAGCGCGTCTTCATTG
GTTAGGACGACGGGACCGGGCTTTGTAGCTATGTTCTCAGGACCGCAGTA
TAAAAGTTCTGATCATGTGGTGGGATATGCCCCGGCAGGAACGCGGAGCC
GCTGCCGGGTTTGTGGCACTGGCTTCACGGCTTATAAAATGCGATTCGGG
ACATTTTTTGCTCATGTGGAGGGGTTCATATTCCTTCGCTGGCACCATCT
GCGGTGTCTTCGGCCTCCCTCCAGCCTCGAGGACGTGACAAAGCTATCGG
GCTTTGGTGATCTGCAGCCTTCAGATATGCAGTTAGTACAAGATTGGGTC
GACGGTGTCAACTTTACTCCTGCCTCCCCGCCCCTCTCTCCGGGGTCTTC
CTTCCGGACCAGCCCGTCCTTCAAGGGCGGCGTCACCGGTCTTCGGGTGG
ACAGCCCCCTGTCGCGACACACGATCGGCAACACGAATGACGAAATTTGT
AGCAGCACCACCAGCATGACCAGCATGATGAGCGATGATAATGCGGAGTA
CTGGCTGGGAAATAAGGGACCAGGCCGTCCTTCCCCGCGTTCCCCTCCTT
CCCCAACCTCGCCCTCCCAGTCGCGCCGCATTGTTGAACTGGCCAGCACT
GCTAGCGCTTCCACATCGATCGTACGATCCCGTCCTGGTATAGGATTGAC
GATTGACACGGCTCTGACTACCACTTACTTCACACCCATCACTTCCCCAT
TGGGAACCTCGCCCACAGCCCGTACGTACCGTTATCAACCCACCTGCAGC
GGGAAAGGGAAAAGAGGAGATAATTGTAGTGGAAGTGGTGTACTCTCCTC
CTCTCCTCCACGGAGCGGCTTTCTGATTGACAATAAGCTGCCCTCCCCGC
GAAATATGTGTCGAAGCCGCAATATGAAGAGCCGGGCCAAGAGCCCCTTC
TTCGCCTGTACGAGACGGTACGACAAGTCAGGTGGAGGTGGAAAATTGGT
TGAGTTGACCGCGGAGGAGAAGAAAATCAAGCTGGAATCCGACAGACTCC
ACCGGGCTGCAAGAGTGGAAAGACAGCGACGACGGAGCAAGACATTGTGA
TGTAAATAGATGACATACATGGTCCAAGCGAGAATTCCAAAATAAGAACT
ATAAATTGCATAAATGCATAGGGCAGCAAAATCAAACTTTCAAGGCAGGA
AAGGAGGCGAAAGATACGATTATATTGGATTGAAGGTCGGTCTTAGATAT
TGTATAATTCTTTGGAAAAGCGTGATGTCGAGGAAGAGGGATAGGGTCCA
GTTGTGTTGTGGAGTGGAAATAGCGTACACGGTACATAGAGAACACACTA
TCCAAAGGTCGGAAGAGGAAAAAGAAAGAATTACCACCTGCAGCCCCATA
TTTGCTTCTGGGTCAGATAAATAGACACACTTTGTTCTTCTTGGCTTTTT
TTACACTTCTCGTTGGAACGATCAATAAAATACCTCCCGTCCTAAAACTT
AACTGGCCTCATAGGCCATTTTCCATCCTCTTTTTCTCCATCTCGCTCTC
ACGACACACCCTTCCCCAAAAATGCCTCCTTTCTTGATCTCTTTTTTTCC
TTCTCATCTTTTCTCAGCCCTCCATCACATGCCGCCGCCCGTGTCCAGGC
CC

Coding sequence (CDS) from alignment at scaffold_24:245193..247694-

>mRNA_8430 ID=mRNA_8430|Name=jgi.p|Nanoce1779_2|601995|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_24:245193..247694- (Nannochloropsis oceanica)
ATGTCTCATCTCTCCTCCTCGAGTCACTCTTCCGTATACTTTACAAGCGA
TCATGGACCGACAAGCCGCACTCCGTCCCCGCGGTCCCCCCGGTCCCCGG
AATCGCCTCTGTATTACCGAGGCCTGCGGATCGAGACAGCTCTCCCCTTG
TCTGTCCAGCTTGACCTCCCAGTCTCTCCAGGAAAAAGGCAAGGACATGG
GCTATCGGCACCCACGATACCGTCCGCTTTGGGCGCAAGCGCGTCTTCAT
TGGTTAGGACGACGGGACCGGGCTTTGTAGCTATGTTCTCAGGACCGCAG
TATAAAAGTTCTGATCATGTGGTGGGATATGCCCCGGCAGGAACGCGGAG
CCGCTGCCGGGTTTGTGGCACTGGCTTCACGGCTTATAAAATGCGATTCG
GGACATTTTTTGCTCATGTGGAGGGGTTCATATTCCTTCGCTGGCACCAT
CTGCGGTGTCTTCGGCCTCCCTCCAGCCTCGAGGACGTGACAAAGCTATC
GGGCTTTGGTGATCTGCAGCCTTCAGATATGCAGTTAGTACAAGATTGGG
TCGACGGTGTCAACTTTACTCCTGCCTCCCCGCCCCTCTCTCCGGGGTCT
TCCTTCCGGACCAGCCCGTCCTTCAAGGGCGGCGTCACCGGTCTTCGGGT
GGACAGCCCCCTGTCGCGACACACGATCGGCAACACGAATGACGAAATTT
GTAGCAGCACCACCAGCATGACCAGCATGATGAGCGATGATAATGCGGAG
TACTGGCTGGGAAATAAGGGACCAGGCCGTCCTTCCCCGCGTTCCCCTCC
TTCCCCAACCTCGCCCTCCCAGTCGCGCCGCATTGTTGAACTGGCCAGCA
CTGCTAGCGCTTCCACATCGATCGTACGATCCCGTCCTGGTATAGGATTG
ACGATTGACACGGCTCTGACTACCACTTACTTCACACCCATCACTTCCCC
ATTGGGAACCTCGCCCACAGCCCGTACGTACCGTTATCAACCCACCTGCA
GCGGGAAAGGGAAAAGAGGAGATAATTGTAGTGGAAGTGGTGTACTCTCC
TCCTCTCCTCCACGGAGCGGCTTTCTGATTGACAATAAGCTGCCCTCCCC
GCGAAATATGTGTCGAAGCCGCAATATGAAGAGCCGGGCCAAGAGCCCCT
TCTTCGCCTGTACGAGACGGTACGACAAGTCAGGTGGAGGTGGAAAATTG
GTTGAGTTGACCGCGGAGGAGAAGAAAATCAAGCTGGAATCCGACAGACT
CCACCGGGCTGCAAGAGTGGAAAGACAGCGACGACGGAGCAAGACATTGT
GA

Synonyms

Publications