jgi.p|Nanoce1779_2|601992, mRNA_8429 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601992
Unique Name	mRNA_8429
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1829
Alignment location	scaffold_24:243135..245217 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602078
Track	FilteredModels2
ProteinId	601992

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:243135..245217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601992	gene_8429	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601992	mRNA_8429-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8429	CDS_8429	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:243135..245217+
coding sequence from alignment at scaffold_24:243135..245217+

mRNA sequence

>mRNA_8429 ID=mRNA_8429|Name=jgi.p|Nanoce1779_2|601992|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
CAGGACTAGTGACGGCGAGACCTCTCTCATCCCACGCCTCTTGGGTCATA
GCGATGGGCCGTTCTCAACGCACCTGATCTGGTTAGGTGGAGAGACTGGA
GCGCCGAAGTAAGCAAGCGCAAGGACCCGAGGAAGCCGAGTTGTGAGGCA
CCCAGTCCGACTGGTTCCACCACACGTGACGAGTCATTTGGGCAGGAGAA
GAGGAGGAGCCCCACCAAACAGCCCGAACAAGACCCCGAGGACTAACAGA
CTATAGCTATGCAAGCCCCTGCGGACGATGCATGGGGCCACTGGTTCCCT
TTTGTCCAACACAATCCGGTGCTGGGGGATAAAAAGTCCTGGCGAGACCG
GGCAGAGCTGCTTCGACGCTTGGAACGGGATGGGATCATCGTGGCCAAAG
GTATCCTGGATGCGCGAGAGTGCGCTGATCTGGCCGAGGACATGGGCGGC
TGGTTGAAGCGGCAAGGGATCGACTGCAACGACAACAAAACCTGGGGCAA
GTACGACGCCAAGAATTTGCACATGAGCAAAACCATCCTGGGCATGATGA
ACACGGGACCAGCTTGCTTCTCCAGTGTGGCCCTCAAGGCACGAAGCTCG
CCCAAAGTGGTGGAGATCTTCAAGGTGCTGTATGACATGCCTTCGGAGGA
CGACCTGGTCATGCAGCTACAGGGCCTGTTCTGGGGCTTTCCCCCCGAGC
ACTACCCAGGCGGCTTCATACCCCCGCAAGAGGGGGCGCCGCCTAATCAC
GGTGGCTACTATCACTGGTCGCAAATGTGGATGCACAGCGACCGGGGACG
GTCAACCACCTGGCCGCCGCGGCTGCAGTGCACGCTGGTGCTTGAAGACG
TGTCACTCTACGATCACGGCTTCGTCTTCCTTTCCAAGTCCCACTATTAT
CATGACGAGTTCTTTGCCGCCCACCCGCCCGGTACACTCGAACTCGAGCC
TGGTCCCACCAAGCCTCCCGCCACGCCTGGCGCACCTGGAACCATGACGG
CGCAGGCGCAGCAACAGCAGGCGGAGGAGGAGGGCAAGGACAACTATATC
CAGCTCACGTACGACAACGTGAAATACTTTGAGCAGCGCGGTTGCCAGTG
GAAGAAAGTGGTGGCGCCCAAGGGCTCCATTATCATCTGGGACTCGCGCC
TCATCCACTCCACCTGCGCCCCCTCCCGTGGCCGGCCCTACCCCAGGGCC
CGCTTCATCGTGTTTGGGGGATATGTGCCGCGCGCCTTTGTTACTGACGA
GGAGAAGGCCGAACGCACCCGCAACTTCCAGCGCTTTTGTCAGGGAATCG
ACCACCAGATTCTGCTCGAACTTTGGCAGCGCGGGCCGCCCGGGAGGCTA
CGGAGGCTCATGGGGCTGGACGATTGCGGGGGCAATGAGGGGAGCGTTGG
TGCGCTGACGAGCGGGGGCAGCGGCATGAGCGGCGCGAGTGGAGAGGAGG
GAAATGAGGAGGGGGCCGAGGAGGAGAAGGATAGGGAGCGGGATGGAAGT
GGGCAGACTGAAGAAAAAGGTCTTGTAGGCGGTAGAGCGGAGGAGGGGGA
GGGGAAGGAGGAGCAGAAGATGGACATGATCAAGTTGAAAGGCCTGGAGG
GGGCCTGGAGCTGGAAGGAGAAGGAGGCAGCTAATGCTCTTCTGGTGATG
ATGAGACCATCCTACAAACAAAAAAGATAAATAGAGAGAGGGATGAAGGA
GTAAGAGACAAGTGGGAGGAGAAATGATGAAGGATAAAGAAAAGAGCGGG
GAAAGTAATCGATGAGACAGCAGAGCGAGAGGACCGCGCATGGTTCAAGT
CCTTGGGCCTGGACACGGGCGGCGGCATG

protein sequence of jgi.p|Nanoce1779_2|601992

>mRNA_8429-protein ID=mRNA_8429-protein|Name=jgi.p|Nanoce1779_2|601992|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MQAPADDAWGHWFPFVQHNPVLGDKKSWRDRAELLRRLERDGIIVAKGIL
DARECADLAEDMGGWLKRQGIDCNDNKTWGKYDAKNLHMSKTILGMMNTG
PACFSSVALKARSSPKVVEIFKVLYDMPSEDDLVMQLQGLFWGFPPEHYP
GGFIPPQEGAPPNHGGYYHWSQMWMHSDRGRSTTWPPRLQCTLVLEDVSL
YDHGFVFLSKSHYYHDEFFAAHPPGTLELEPGPTKPPATPGAPGTMTAQA
QQQQAEEEGKDNYIQLTYDNVKYFEQRGCQWKKVVAPKGSIIIWDSRLIH
STCAPSRGRPYPRARFIVFGGYVPRAFVTDEEKAERTRNFQRFCQGIDHQ
ILLELWQRGPPGRLRRLMGLDDCGGNEGSVGALTSGGSGMSGASGEEGNE
EGAEEEKDRERDGSGQTEEKGLVGGRAEEGEGKEEQKMDMIKLKGLEGAW
SWKEKEAANALLVMMRPSYKQKR*

mRNA from alignment at scaffold_24:243135..245217+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8429 ID=mRNA_8429|Name=jgi.p|Nanoce1779_2|601992|organism=Nannochloropsis oceanica|type=mRNA|length=2083bp|location=Sequence derived from alignment at scaffold_24:243135..245217+ (Nannochloropsis oceanica)
CAGGACTAGTGACGGCGAGACCTCTCTCATCCCACGCCTCTTGGGTCATA
GCGATGGGCCGTTCTCAACGCACCTGATCTGGTTAGGTGGAGAGACTGGA
GCGCCGAAGTAAGCAAGCGCAAGGACCCGAGGAAGCCGAGTTGTGAGGCA
CCCAGTCCGACTGGTTCCACCACACGTGACGAGTCATTTGGGCAGGAGAA
GAGGAGGAGCCCCACCAAACAGCCCGAACAAGACCCCGAGGACTAACAGA
CTATAGCTATGCAAGCCCCTGCGGACGATGCATGGGGCCACTGGTTCCCT
TTTGTCCAACACAATCCGGTGCTGGGGGATAAAAAGTCCTGGCGAGACCG
GGCAGAGCTGCTTCGACGCTTGGAACGGGATGGGATCATCGTGGCCAAAG
GTAAGAAAACACTCCATACGGGGAAAAGGCGCCGCAAAGGACAGGGGCTG
AAACCGTGAGGAAGAAGGGACATAAGTTATGAATAATGCTCGTTATATCA
TCCTGTAGGTATCCTGGATGCGCGAGAGTGCGCTGATCTGGCCGAGGACA
TGGGCGGCTGGTTGAAGCGGCAAGGGATCGACTGCAACGACAACAAAACC
TGGGGCAAGTACGACGCCAAGAATTTGCACATGAGCAAAACCATCCTGGG
CATGATGAACACGGGACCAGCTTGCTTCTCCAGGTACACTTTGTAACTTT
AGCACTCCCCCACCATTTCCGTAATTTCCGTAGGACTCTTACACGCGTCG
CCCGAGGGGAGAACGGACAACTTGTCCGGTTCTGCACCTTCCTGACTCAC
AACTTCTTTCGTCCTCCCGAATAAAACAGTGTGGCCCTCAAGGCACGAAG
CTCGCCCAAAGTGGTGGAGATCTTCAAGGTGCTGTATGACATGCCTTCGG
AGGACGACCTGGTCATGCAGCTACAGGGCCTGTTCTGGGGCTTTCCCCCC
GAGCACTACCCAGGCGGCTTCATACCCCCGCAAGAGGGGGCGCCGCCTAA
TCACGGTGGCTACTATCACTGGTCGCAAATGTGGATGCACAGCGACCGGG
GACGGTCAACCACCTGGCCGCCGCGGCTGCAGTGCACGCTGGTGCTTGAA
GACGTGTCACTCTACGATCACGGCTTCGTCTTCCTTTCCAAGTCCCACTA
TTATCATGACGAGTTCTTTGCCGCCCACCCGCCCGGTACACTCGAACTCG
AGCCTGGTCCCACCAAGCCTCCCGCCACGCCTGGCGCACCTGGAACCATG
ACGGCGCAGGCGCAGCAACAGCAGGCGGAGGAGGAGGGCAAGGACAACTA
TATCCAGCTCACGTACGACAACGTGAAATACTTTGAGCAGCGCGGTTGCC
AGTGGAAGAAAGTGGTGGCGCCCAAGGGCTCCATTATCATCTGGGACTCG
CGCCTCATCCACTCCACCTGCGCCCCCTCCCGTGGCCGGCCCTACCCCAG
GGCCCGCTTCATCGTGTTTGGGGGATATGTGCCGCGCGCCTTTGTTACTG
ACGAGGAGAAGGCCGAACGCACCCGCAACTTCCAGCGCTTTTGTCAGGGA
ATCGACCACCAGATTCTGCTCGAACTTTGGCAGCGCGGGCCGCCCGGGAG
GCTACGGAGGCTCATGGGGCTGGACGATTGCGGGGGCAATGAGGGGAGCG
TTGGTGCGCTGACGAGCGGGGGCAGCGGCATGAGCGGCGCGAGTGGAGAG
GAGGGAAATGAGGAGGGGGCCGAGGAGGAGAAGGATAGGGAGCGGGATGG
AAGTGGGCAGACTGAAGAAAAAGGTCTTGTAGGCGGTAGAGCGGAGGAGG
GGGAGGGGAAGGAGGAGCAGAAGATGGACATGATCAAGTTGAAAGGCCTG
GAGGGGGCCTGGAGCTGGAAGGAGAAGGAGGCAGCTAATGCTCTTCTGGT
GATGATGAGACCATCCTACAAACAAAAAAGATAAATAGAGAGAGGGATGA
AGGAGTAAGAGACAAGTGGGAGGAGAAATGATGAAGGATAAAGAAAAGAG
CGGGGAAAGTAATCGATGAGACAGCAGAGCGAGAGGACCGCGCATGGTTC
AAGTCCTTGGGCCTGGACACGGGCGGCGGCATG

Coding sequence (CDS) from alignment at scaffold_24:243135..245217+

>mRNA_8429 ID=mRNA_8429|Name=jgi.p|Nanoce1779_2|601992|organism=Nannochloropsis oceanica|type=CDS|length=4266bp|location=Sequence derived from alignment at scaffold_24:243135..245217+ (Nannochloropsis oceanica)
ATGCAAGCCCCTGCGGACGATGCATGGGGCCACTGGTTCCCTTTTGTCCA
ACACAATCCGGTGCTGGGGGATAAAAAGTCCTGGCGAGACCGGGCAGAGC
TGCTTCGACGCTTGGAACGGGATGGGATCATCGTGGCCAAAGGTATCCTG
GATGCGCGAGAGTGCGCTGATCTGGCCGAGGACATGGGCGGCTGGTTGAA
GCGGCAAGGGATCGACTGCAACGACAACAAAACCTGGGGCAAGTACGACG
CCAAGAATTTGCACATGAGCAAAACCATCCTGGGCATGATGAACACGGGA
CCAGCTTGCTTCTCCAGTGTGGCCCTCAAGGCACGAAGCTCGCCCAAAGT
GGTGGAGATCTTCAAGGTGCTGTATGACATGCCTTCGGAGGACGACCTGG
TCATGCAGCTACAGGGCCTGTTCTGGGGCTTTCCCCCCGAGCACTACCCA
GGCGGCTTCATACCCCCGCAAGAGGGGGCGCCGCCTAATCACGGTGGCTA
CTATCACTGGTCGCAAATGTGGATGCACAGCGACCGGGGACGGTCAACCA
CCTGGCCGCCGCGGCTGCAGTGCACGCTGGTGCTTGAAGACGTGTCACTC
TACGATCACGGCTTCGTCTTCCTTTCCAAGTCCCACTATTATCATGACGA
GTTCTTTGCCGCCCACCCGCCCGGTACACTCGAACTCGAGCCTGGTCCCA
CCAAGCCTCCCGCCACGCCTGGCGCACCTGGAACCATGACGGCGCAGGCG
CAGCAACAGCAGGCGGAGGAGGAGGGCAAGGACAACTATATCCAGCTCAC
GTACGACAACGTGAAATACTTTGAGCAGCGCGGTTGCCAGTGGAAGAAAG
TGGTGGCGCCCAAGGGCTCCATTATCATCTGGGACTCGCGCCTCATCCAC
TCCACCTGCGCCCCCTCCCGTGGCCGGCCCTACCCCAGGGCCCGCTTCAT
CGTGTTTGGGGGATATGTGCCGCGCGCCTTTGTTACTGACGAGGAGAAGG
CCGAACGCACCCGCAACTTCCAGCGCTTTTGTCAGGGAATCGACCACCAG
ATTCTGCTCGAACTTTGGCAGCGCGGGCCGCCCGGGAGGCTACGGAGGCT
CATGGGGCTGGACGATTGCGGGGGCAATGAGGGGAGCGTTGGTGCGCTGA
CGAGCGGGGGCAGCGGCATGAGCGGCGCGAGTGGAGAGGAGGGAAATGAG
GAGGGGGCCGAGGAGGAGAAGGATAGGGAGCGGGATGGAAGTGGGCAGAC
TGAAGAAAAAGGTCTTGTAGGCGGTAGAGCGGAGGAGGGGGAGGGGAAGG
AGGAGCAGAAGATGGACATGATCAAGTTGAAAGGCCTGGAGGGGGCCTGG
AGCTGGAAGGAGAAGGAGGCAGCTAATGCTCTTCTGGTGATGATGAGACC
ATCCTACAAACAAAAAAGATAAATGCAAGCCCCTGCGGACGATGCATGGG
GCCACTGGTTCCCTTTTGTCCAACACAATCCGGTGCTGGGGGATAAAAAG
TCCTGGCGAGACCGGGCAGAGCTGCTTCGACGCTTGGAACGGGATGGGAT
CATCGTGGCCAAAGGTATCCTGGATGCGCGAGAGTGCGCTGATCTGGCCG
AGGACATGGGCGGCTGGTTGAAGCGGCAAGGGATCGACTGCAACGACAAC
AAAACCTGGGGCAAGTACGACGCCAAGAATTTGCACATGAGCAAAACCAT
CCTGGGCATGATGAACACGGGACCAGCTTGCTTCTCCAGTGTGGCCCTCA
AGGCACGAAGCTCGCCCAAAGTGGTGGAGATCTTCAAGGTGCTGTATGAC
ATGCCTTCGGAGGACGACCTGGTCATGCAGCTACAGGGCCTGTTCTGGGG
CTTTCCCCCCGAGCACTACCCAGGCGGCTTCATACCCCCGCAAGAGGGGG
CGCCGCCTAATCACGGTGGCTACTATCACTGGTCGCAAATGTGGATGCAC
AGCGACCGGGGACGGTCAACCACCTGGCCGCCGCGGCTGCAGTGCACGCT
GGTGCTTGAAGACGTGTCACTCTACGATCACGGCTTCGTCTTCCTTTCCA
AGTCCCACTATTATCATGACGAGTTCTTTGCCGCCCACCCGCCCGGTACA
CTCGAACTCGAGCCTGGTCCCACCAAGCCTCCCGCCACGCCTGGCGCACC
TGGAACCATGACGGCGCAGGCGCAGCAACAGCAGGCGGAGGAGGAGGGCA
AGGACAACTATATCCAGCTCACGTACGACAACGTGAAATACTTTGAGCAG
CGCGGTTGCCAGTGGAAGAAAGTGGTGGCGCCCAAGGGCTCCATTATCAT
CTGGGACTCGCGCCTCATCCACTCCACCTGCGCCCCCTCCCGTGGCCGGC
CCTACCCCAGGGCCCGCTTCATCGTGTTTGGGGGATATGTGCCGCGCGCC
TTTGTTACTGACGAGGAGAAGGCCGAACGCACCCGCAACTTCCAGCGCTT
TTGTCAGGGAATCGACCACCAGATTCTGCTCGAACTTTGGCAGCGCGGGC
CGCCCGGGAGGCTACGGAGGCTCATGGGGCTGGACGATTGCGGGGGCAAT
GAGGGGAGCGTTGGTGCGCTGACGAGCGGGGGCAGCGGCATGAGCGGCGC
GAGTGGAGAGGAGGGAAATGAGGAGGGGGCCGAGGAGGAGAAGGATAGGG
AGCGGGATGGAAGTGGGCAGACTGAAGAAAAAGGTCTTGTAGGCGGTAGA
GCGGAGGAGGGGGAGGGGAAGGAGGAGCAGAAGATGGACATGATCAAGTT
GAAAGGCCTGGAGGGGGCCTGGAGCTGGAAGGAGAAGGAGGCAGCTAATG
CTCTTCTGGTGATGATGAGACCATCCTACAAACAAAAAAGATAAATGCAA
GCCCCTGCGGACGATGCATGGGGCCACTGGTTCCCTTTTGTCCAACACAA
TCCGGTGCTGGGGGATAAAAAGTCCTGGCGAGACCGGGCAGAGCTGCTTC
GACGCTTGGAACGGGATGGGATCATCGTGGCCAAAGGTATCCTGGATGCG
CGAGAGTGCGCTGATCTGGCCGAGGACATGGGCGGCTGGTTGAAGCGGCA
AGGGATCGACTGCAACGACAACAAAACCTGGGGCAAGTACGACGCCAAGA
ATTTGCACATGAGCAAAACCATCCTGGGCATGATGAACACGGGACCAGCT
TGCTTCTCCAGTGTGGCCCTCAAGGCACGAAGCTCGCCCAAAGTGGTGGA
GATCTTCAAGGTGCTGTATGACATGCCTTCGGAGGACGACCTGGTCATGC
AGCTACAGGGCCTGTTCTGGGGCTTTCCCCCCGAGCACTACCCAGGCGGC
TTCATACCCCCGCAAGAGGGGGCGCCGCCTAATCACGGTGGCTACTATCA
CTGGTCGCAAATGTGGATGCACAGCGACCGGGGACGGTCAACCACCTGGC
CGCCGCGGCTGCAGTGCACGCTGGTGCTTGAAGACGTGTCACTCTACGAT
CACGGCTTCGTCTTCCTTTCCAAGTCCCACTATTATCATGACGAGTTCTT
TGCCGCCCACCCGCCCGGTACACTCGAACTCGAGCCTGGTCCCACCAAGC
CTCCCGCCACGCCTGGCGCACCTGGAACCATGACGGCGCAGGCGCAGCAA
CAGCAGGCGGAGGAGGAGGGCAAGGACAACTATATCCAGCTCACGTACGA
CAACGTGAAATACTTTGAGCAGCGCGGTTGCCAGTGGAAGAAAGTGGTGG
CGCCCAAGGGCTCCATTATCATCTGGGACTCGCGCCTCATCCACTCCACC
TGCGCCCCCTCCCGTGGCCGGCCCTACCCCAGGGCCCGCTTCATCGTGTT
TGGGGGATATGTGCCGCGCGCCTTTGTTACTGACGAGGAGAAGGCCGAAC
GCACCCGCAACTTCCAGCGCTTTTGTCAGGGAATCGACCACCAGATTCTG
CTCGAACTTTGGCAGCGCGGGCCGCCCGGGAGGCTACGGAGGCTCATGGG
GCTGGACGATTGCGGGGGCAATGAGGGGAGCGTTGGTGCGCTGACGAGCG
GGGGCAGCGGCATGAGCGGCGCGAGTGGAGAGGAGGGAAATGAGGAGGGG
GCCGAGGAGGAGAAGGATAGGGAGCGGGATGGAAGTGGGCAGACTGAAGA
AAAAGGTCTTGTAGGCGGTAGAGCGGAGGAGGGGGAGGGGAAGGAGGAGC
AGAAGATGGACATGATCAAGTTGAAAGGCCTGGAGGGGGCCTGGAGCTGG
AAGGAGAAGGAGGCAGCTAATGCTCTTCTGGTGATGATGAGACCATCCTA
CAAACAAAAAAGATAA

Synonyms

Publications