jgi.p|Nanoce1779_2|601990, mRNA_8428 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601990
Unique Name	mRNA_8428
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1984
Alignment location	scaffold_24:240120..242679 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602076
Track	FilteredModels2
ProteinId	601990

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:240120..242679 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601990	gene_8428	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601990	mRNA_8428-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8428	CDS_8428	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:240120..242679+
coding sequence from alignment at scaffold_24:240120..242679+

mRNA sequence

>mRNA_8428 ID=mRNA_8428|Name=jgi.p|Nanoce1779_2|601990|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp
ACAGCAATCAAATTTGCCATCGCGTCGTAAGCATGGCTGCCGATCCGAAA
GCCGCTGCCACAGCTTCTGGCCCGGCGGACGGTCCGGGCCTTAACTCGTC
GCAGCCCACAGATACGGAGATCGACACGAACTGGGACGAATGCGTCGAGT
CTTTCGACTCCATGGACCTGCGAGATGACCTTCTCCGCGGCATCTACGCG
TACGGCTTCGAGAAGCCTTCTGCCATCCAGCAGCGGGCTGTCAAACCTGT
CCTCATGGGTCGGGACGTAATAGCACAAGCCCAGTCAGGGACGGGCAAGA
CTGCCACGTTCGCGATCAGTATCCTGCAGTCCATTGACACGTCCATCCGT
GAGTGCCAGGCTTTGGTTCTGGCACCCACACGAGAGCTGGCGCAGCAGAT
CATGAAGGTGCTCATCTCGCTGGGCGATTTCATGGAGTTGGACGTGCATG
CGTGCGTAGGCGGCACGGCTGTGCGTGACGACATCTCCAAGCTGCGCAGC
GGGGTGCACGTGGTGGTGGGCACGCCGGGCCGCGTCTACGACATGATTAA
TCGTCGCGCGCTCAAGCTGTCGTACGTAAAGCTCTTCGTGTTGGACGAGG
CGGACGAGATGCTGAGCCGCGGCTTCAAGGAGCAGATCTATGATGTGTTC
AAGTTCCTCCCTGAGAAGGTGCAGTGCGCACTTTTCAGCGCTACCATGCC
CCTGGAGGTGCTAGAGGTGACCAATAAGTTCATGCGCGAGCCTGTACGCA
TCCTGGTGAAGCGTGACGAGCTGACACTGGAGGGCATCAAGCAGTTCTAC
ATCGCCGTGGAGCGCGAGGACTGGAAGCTGGACACGCTCTGCGACCTGTA
CGAGACGCTCACCATCACCCAGGCCATCATCTACTGCAACACGCGGAGAA
AGGTGGACTGGCTGACGGAGGCGATGCAAAAGCGCGACTTCACGGTGTCG
GCCATGCACGGCGACATGGACCAGCGGGAACGCGACATCATCATGAAGGA
ATTCCGATCCGGCTCGTCCCGCGTGCTAATCACCACCGATCTGCTGGCCC
GCGGCATCGACGTTCAGCAAGTGTCACTTGTCATCAACTACGATTTGCCC
ACCAACCGCGAGAACTATATTCATCGTATCGGCCGCTCAGGCCGCTTCGG
CCGCAAGGGCGTGGCCATAAACTTCCTGACTTCGGGCGACGTTCGCTACC
TCAAGGACATCGAGCAGTTCTACAACACACAAATCGAGGAGATGCCTGTC
GATGTCGCCGACCTCATCTGAGCCATTTCTCGACTCAAGCCTCTCTCGCA
TGTATTAAATTACAAGCGATGAGAAAAGATAGTTATTCCAAGGTGCCAGC
TGGGGGACTGCATGAGAAGGCACGAGAAGACGTTTAGTGTGTCTGAGTGC
GAGAGTGTGTGAGTGTGTTTGAGGAGTGCAGTAAGTGAAACCTTGTCATC
ATTGCCTATCCTAAGGTGCCTATCCTAGGGTGGAGTATGAGTGTGGAGAG
CGTCAGGAATCAAAGGATGGAAGGGAAGAGAGGAGAGGAGGAGGATAGGA
GGAAAAGTGGCCGACATAATGTTGAGGTGTACAAGGAAGGGACGCGCAAT
TTATAGACTAACTTTCCTCCCCAAACCCGTTCAAGAAATAGAAAGAGAAT
GAAGCTAATCTCCCCCCAAGCAGAGGCCTTCATCATCAAAACCAATTTCC
TGTTTTTTCAGTTAAAAATCTCCTGCCGCAAGTTGCCGCATCAGGAGCAG
CAACATGTGAGCACTGAGTCCTAGCGTCGTGGGTGGCGATTGAGACGCCC
CATAGAATGACATGAGCGAAGCCAGGAAGCAAGAAGAGAAATGCATAGGT
CCCTCCCAATCGATCGGAGGCAGTAACGAGGTGGAGGATGCCCGTCTGTC
GTGTCTTCGCGGAAGGCAAAGGAAGAGTTTTGGAGGAAAAGAAGAGCGAA
GCAAAAAGAAGTATTAAAAGTGACGATTGAAGAA

protein sequence of jgi.p|Nanoce1779_2|601990

>mRNA_8428-protein ID=mRNA_8428-protein|Name=jgi.p|Nanoce1779_2|601990|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MAADPKAAATASGPADGPGLNSSQPTDTEIDTNWDECVESFDSMDLRDDL
LRGIYAYGFEKPSAIQQRAVKPVLMGRDVIAQAQSGTGKTATFAISILQS
IDTSIRECQALVLAPTRELAQQIMKVLISLGDFMELDVHACVGGTAVRDD
ISKLRSGVHVVVGTPGRVYDMINRRALKLSYVKLFVLDEADEMLSRGFKE
QIYDVFKFLPEKVQCALFSATMPLEVLEVTNKFMREPVRILVKRDELTLE
GIKQFYIAVEREDWKLDTLCDLYETLTITQAIIYCNTRRKVDWLTEAMQK
RDFTVSAMHGDMDQRERDIIMKEFRSGSSRVLITTDLLARGIDVQQVSLV
INYDLPTNRENYIHRIGRSGRFGRKGVAINFLTSGDVRYLKDIEQFYNTQ
IEEMPVDVADLI*

mRNA from alignment at scaffold_24:240120..242679+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8428 ID=mRNA_8428|Name=jgi.p|Nanoce1779_2|601990|organism=Nannochloropsis oceanica|type=mRNA|length=2560bp|location=Sequence derived from alignment at scaffold_24:240120..242679+ (Nannochloropsis oceanica)
ACAGCAATCAAATTTGCCATCGCGTCGTAAGCATGGCTGCCGATCCGAAA
GCCGCTGCCACAGCTTCTGGCCCGGCGGACGGTCCGGGCCTTAACTCGTC
GCAGCCCACAGATACGGAGATCGACACGAACTGGGACGAATGCGTCGAGT
CTTTCGACTCCATGGACCTGCGAGATGACCTTCTCCGCGGCATCTACGCG
TACGGCTTCGAGAAGCCTTCTGCCATCCAGCAGCGGGCTGTCAAACCTGT
CCTCATGGGTCGGGACGTAATAGCACAAGCCCAGTCAGGTGAGAAATGGG
TGGGTTTGTTTGTCGAAGAGGCGGTGGATTGTAAAGGGAGGGAGAAAGCG
GAATTTGAGGGAGAGGAGGCCAAACCTGAGCCTTATTTTGAAGGAAGACC
GTGGGAAATGTCACGGGAGATATAATGGGCTTTTAAGACTCCTGATTGAA
TGTAGACTAAGCGTGGGGGTGATGATTTTGAAATGTAAAACACCATCTTT
CGAGTCCAAGCGTCCATGCGGCGCGCTGACGACACGAACCATTCATCTCT
GACAACCTGACCCACAAATACACACATAGCTGCAGATTAATCGTGTGTCT
TTAATTGTTTTCGCATCCAAATTCCGTACCCTCACACTCGCTTCTCCGAC
CCCCTCCTCTTCCTCCCCATGTGCCTGCAGGGACGGGCAAGACTGCCACG
TTCGCGATCAGTATCCTGCAGTCCATTGACACGTCCATCCGTGAGTGCCA
GGCTTTGGTTCTGGCACCCACACGAGAGCTGGCGCAGCAGATCATGAAGG
TGCTCATCTCGCTGGGCGATTTCATGGAGTTGGACGTGCATGCGTGCGTA
GGCGGCACGGCTGTGCGTGACGACATCTCCAAGCTGCGCAGCGGGGTGCA
CGTGGTGGTGGGCACGCCGGGCCGCGTCTACGACATGATTAATCGTCGCG
CGCTCAAGCTGTCGTACGTAAAGCTCTTCGTGTTGGACGAGGCGGACGAG
ATGCTGAGCCGCGGCTTCAAGGAGCAGATCTATGATGTGTTCAAGTTCCT
CCCTGAGAAGGTGCAGTGCGCACTTTTCAGCGCTACCATGCCCCTGGAGG
TGCTAGAGGTGACCAATAAGTTCATGCGCGAGCCTGTACGCATCCTGGTG
AAGCGTGACGAGCTGACACTGGAGGGCATCAAGCAGTTCTACATCGCCGT
GGAGCGCGAGGACTGGAAGCTGGACACGCTCTGCGACCTGTACGAGACGC
TCACCATCACCCAGGCCATCATCTACTGCAACACGCGGAGAAAGGTAGGA
ATCTAAAGGAGCGGCGAGAGGGGAAAGGAAGGAAGGAACGTGGGGAAGTG
GGACATGCACGACACGGCGAGACCGACGAGAACACCATGTCCGAAGGAAT
CTAGGAATCCGTTTCTTTTCTGTAGTCGTTTCCCCACACCTCTCCCTCCA
TTTTCTTTTCCTCCTTCTACCTCCGCAGGTGGACTGGCTGACGGAGGCGA
TGCAAAAGCGCGACTTCACGGTGTCGGCCATGCACGGCGACATGGACCAG
CGGGAACGCGACATCATCATGAAGGAATTCCGATCCGGCTCGTCCCGCGT
GCTAATCACCACCGATCTGCTGGCCCGCGGCATCGACGTTCAGCAAGTGT
CACTTGTCATCAACTACGATTTGCCCACCAACCGCGAGAACTATATTCAT
CGTATCGGCCGCTCAGGCCGCTTCGGCCGCAAGGGCGTGGCCATAAACTT
CCTGACTTCGGGCGACGTTCGCTACCTCAAGGACATCGAGCAGTTCTACA
ACACACAAATCGAGGAGATGCCTGTCGATGTCGCCGACCTCATCTGAGCC
ATTTCTCGACTCAAGCCTCTCTCGCATGTATTAAATTACAAGCGATGAGA
AAAGATAGTTATTCCAAGGTGCCAGCTGGGGGACTGCATGAGAAGGCACG
AGAAGACGTTTAGTGTGTCTGAGTGCGAGAGTGTGTGAGTGTGTTTGAGG
AGTGCAGTAAGTGAAACCTTGTCATCATTGCCTATCCTAAGGTGCCTATC
CTAGGGTGGAGTATGAGTGTGGAGAGCGTCAGGAATCAAAGGATGGAAGG
GAAGAGAGGAGAGGAGGAGGATAGGAGGAAAAGTGGCCGACATAATGTTG
AGGTGTACAAGGAAGGGACGCGCAATTTATAGACTAACTTTCCTCCCCAA
ACCCGTTCAAGAAATAGAAAGAGAATGAAGCTAATCTCCCCCCAAGCAGA
GGCCTTCATCATCAAAACCAATTTCCTGTTTTTTCAGTTAAAAATCTCCT
GCCGCAAGTTGCCGCATCAGGAGCAGCAACATGTGAGCACTGAGTCCTAG
CGTCGTGGGTGGCGATTGAGACGCCCCATAGAATGACATGAGCGAAGCCA
GGAAGCAAGAAGAGAAATGCATAGGTCCCTCCCAATCGATCGGAGGCAGT
AACGAGGTGGAGGATGCCCGTCTGTCGTGTCTTCGCGGAAGGCAAAGGAA
GAGTTTTGGAGGAAAAGAAGAGCGAAGCAAAAAGAAGTATTAAAAGTGAC
GATTGAAGAA

Coding sequence (CDS) from alignment at scaffold_24:240120..242679+

>mRNA_8428 ID=mRNA_8428|Name=jgi.p|Nanoce1779_2|601990|organism=Nannochloropsis oceanica|type=CDS|length=3717bp|location=Sequence derived from alignment at scaffold_24:240120..242679+ (Nannochloropsis oceanica)
ATGGCTGCCGATCCGAAAGCCGCTGCCACAGCTTCTGGCCCGGCGGACGG
TCCGGGCCTTAACTCGTCGCAGCCCACAGATACGGAGATCGACACGAACT
GGGACGAATGCGTCGAGTCTTTCGACTCCATGGACCTGCGAGATGACCTT
CTCCGCGGCATCTACGCGTACGGCTTCGAGAAGCCTTCTGCCATCCAGCA
GCGGGCTGTCAAACCTGTCCTCATGGGTCGGGACGTAATAGCACAAGCCC
AGTCAGGGACGGGCAAGACTGCCACGTTCGCGATCAGTATCCTGCAGTCC
ATTGACACGTCCATCCGTGAGTGCCAGGCTTTGGTTCTGGCACCCACACG
AGAGCTGGCGCAGCAGATCATGAAGGTGCTCATCTCGCTGGGCGATTTCA
TGGAGTTGGACGTGCATGCGTGCGTAGGCGGCACGGCTGTGCGTGACGAC
ATCTCCAAGCTGCGCAGCGGGGTGCACGTGGTGGTGGGCACGCCGGGCCG
CGTCTACGACATGATTAATCGTCGCGCGCTCAAGCTGTCGTACGTAAAGC
TCTTCGTGTTGGACGAGGCGGACGAGATGCTGAGCCGCGGCTTCAAGGAG
CAGATCTATGATGTGTTCAAGTTCCTCCCTGAGAAGGTGCAGTGCGCACT
TTTCAGCGCTACCATGCCCCTGGAGGTGCTAGAGGTGACCAATAAGTTCA
TGCGCGAGCCTGTACGCATCCTGGTGAAGCGTGACGAGCTGACACTGGAG
GGCATCAAGCAGTTCTACATCGCCGTGGAGCGCGAGGACTGGAAGCTGGA
CACGCTCTGCGACCTGTACGAGACGCTCACCATCACCCAGGCCATCATCT
ACTGCAACACGCGGAGAAAGGTGGACTGGCTGACGGAGGCGATGCAAAAG
CGCGACTTCACGGTGTCGGCCATGCACGGCGACATGGACCAGCGGGAACG
CGACATCATCATGAAGGAATTCCGATCCGGCTCGTCCCGCGTGCTAATCA
CCACCGATCTGCTGGCCCGCGGCATCGACGTTCAGCAAGTGTCACTTGTC
ATCAACTACGATTTGCCCACCAACCGCGAGAACTATATTCATCGTATCGG
CCGCTCAGGCCGCTTCGGCCGCAAGGGCGTGGCCATAAACTTCCTGACTT
CGGGCGACGTTCGCTACCTCAAGGACATCGAGCAGTTCTACAACACACAA
ATCGAGGAGATGCCTGTCGATGTCGCCGACCTCATCTGAATGGCTGCCGA
TCCGAAAGCCGCTGCCACAGCTTCTGGCCCGGCGGACGGTCCGGGCCTTA
ACTCGTCGCAGCCCACAGATACGGAGATCGACACGAACTGGGACGAATGC
GTCGAGTCTTTCGACTCCATGGACCTGCGAGATGACCTTCTCCGCGGCAT
CTACGCGTACGGCTTCGAGAAGCCTTCTGCCATCCAGCAGCGGGCTGTCA
AACCTGTCCTCATGGGTCGGGACGTAATAGCACAAGCCCAGTCAGGGACG
GGCAAGACTGCCACGTTCGCGATCAGTATCCTGCAGTCCATTGACACGTC
CATCCGTGAGTGCCAGGCTTTGGTTCTGGCACCCACACGAGAGCTGGCGC
AGCAGATCATGAAGGTGCTCATCTCGCTGGGCGATTTCATGGAGTTGGAC
GTGCATGCGTGCGTAGGCGGCACGGCTGTGCGTGACGACATCTCCAAGCT
GCGCAGCGGGGTGCACGTGGTGGTGGGCACGCCGGGCCGCGTCTACGACA
TGATTAATCGTCGCGCGCTCAAGCTGTCGTACGTAAAGCTCTTCGTGTTG
GACGAGGCGGACGAGATGCTGAGCCGCGGCTTCAAGGAGCAGATCTATGA
TGTGTTCAAGTTCCTCCCTGAGAAGGTGCAGTGCGCACTTTTCAGCGCTA
CCATGCCCCTGGAGGTGCTAGAGGTGACCAATAAGTTCATGCGCGAGCCT
GTACGCATCCTGGTGAAGCGTGACGAGCTGACACTGGAGGGCATCAAGCA
GTTCTACATCGCCGTGGAGCGCGAGGACTGGAAGCTGGACACGCTCTGCG
ACCTGTACGAGACGCTCACCATCACCCAGGCCATCATCTACTGCAACACG
CGGAGAAAGGTGGACTGGCTGACGGAGGCGATGCAAAAGCGCGACTTCAC
GGTGTCGGCCATGCACGGCGACATGGACCAGCGGGAACGCGACATCATCA
TGAAGGAATTCCGATCCGGCTCGTCCCGCGTGCTAATCACCACCGATCTG
CTGGCCCGCGGCATCGACGTTCAGCAAGTGTCACTTGTCATCAACTACGA
TTTGCCCACCAACCGCGAGAACTATATTCATCGTATCGGCCGCTCAGGCC
GCTTCGGCCGCAAGGGCGTGGCCATAAACTTCCTGACTTCGGGCGACGTT
CGCTACCTCAAGGACATCGAGCAGTTCTACAACACACAAATCGAGGAGAT
GCCTGTCGATGTCGCCGACCTCATCTGAATGGCTGCCGATCCGAAAGCCG
CTGCCACAGCTTCTGGCCCGGCGGACGGTCCGGGCCTTAACTCGTCGCAG
CCCACAGATACGGAGATCGACACGAACTGGGACGAATGCGTCGAGTCTTT
CGACTCCATGGACCTGCGAGATGACCTTCTCCGCGGCATCTACGCGTACG
GCTTCGAGAAGCCTTCTGCCATCCAGCAGCGGGCTGTCAAACCTGTCCTC
ATGGGTCGGGACGTAATAGCACAAGCCCAGTCAGGGACGGGCAAGACTGC
CACGTTCGCGATCAGTATCCTGCAGTCCATTGACACGTCCATCCGTGAGT
GCCAGGCTTTGGTTCTGGCACCCACACGAGAGCTGGCGCAGCAGATCATG
AAGGTGCTCATCTCGCTGGGCGATTTCATGGAGTTGGACGTGCATGCGTG
CGTAGGCGGCACGGCTGTGCGTGACGACATCTCCAAGCTGCGCAGCGGGG
TGCACGTGGTGGTGGGCACGCCGGGCCGCGTCTACGACATGATTAATCGT
CGCGCGCTCAAGCTGTCGTACGTAAAGCTCTTCGTGTTGGACGAGGCGGA
CGAGATGCTGAGCCGCGGCTTCAAGGAGCAGATCTATGATGTGTTCAAGT
TCCTCCCTGAGAAGGTGCAGTGCGCACTTTTCAGCGCTACCATGCCCCTG
GAGGTGCTAGAGGTGACCAATAAGTTCATGCGCGAGCCTGTACGCATCCT
GGTGAAGCGTGACGAGCTGACACTGGAGGGCATCAAGCAGTTCTACATCG
CCGTGGAGCGCGAGGACTGGAAGCTGGACACGCTCTGCGACCTGTACGAG
ACGCTCACCATCACCCAGGCCATCATCTACTGCAACACGCGGAGAAAGGT
GGACTGGCTGACGGAGGCGATGCAAAAGCGCGACTTCACGGTGTCGGCCA
TGCACGGCGACATGGACCAGCGGGAACGCGACATCATCATGAAGGAATTC
CGATCCGGCTCGTCCCGCGTGCTAATCACCACCGATCTGCTGGCCCGCGG
CATCGACGTTCAGCAAGTGTCACTTGTCATCAACTACGATTTGCCCACCA
ACCGCGAGAACTATATTCATCGTATCGGCCGCTCAGGCCGCTTCGGCCGC
AAGGGCGTGGCCATAAACTTCCTGACTTCGGGCGACGTTCGCTACCTCAA
GGACATCGAGCAGTTCTACAACACACAAATCGAGGAGATGCCTGTCGATG
TCGCCGACCTCATCTGA

Synonyms

Publications