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Properties
Property Name | Value |
TranscriptId | 602065 |
Track | FilteredModels2 |
ProteinId | 601979 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_24 | supercontig | scaffold_24:235283..239372 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8427 ID=mRNA_8427|Name=jgi.p|Nanoce1779_2|601979|organism=Nannochloropsis oceanica|type=mRNA|length=4090bp ACAGTCAGGGCCGACTACTTATAGCAGCTTAGCTCTGTTGCTGGGACAGA AATACCGACGGGCCGCCCATTTTCTCACGTCACATTGAAGGTCCCGTGTG GCAAAAACGGGACTCTGGACTCGCAGCGTCACCTTGGCGAAGCAGGAGGG TTGTCGCACATTACGAACGACGAGCCTGAAGGTGTGTGTGAGCCAGTAGA GCCCAAAGCATTCAGCAAAGAGAGGGGAGGATGTGGAGTCAGCAGCGGGG TAACGCTGTACCCTTGCACACGTACCGCAGCGCTCTACTAGCGGGAGGGG CTGAGTGTAAGATTGGCGGGCACTGTCACGATCATGTCCGGATGCTTTCA ATGCATAATCCGATGAAGGATGAATTGCTAGGCTTTGGTGTTGGTCATTG CCGCTTCATCGTGCAAGGCCCTTCTCATATGCTGCTGCAAGGCTTTCGGG CAGGCGCCGCTGCCGCTGCATTGATTGTGGTACCCACCCCACCGTCCTCA TCCTTCTCAACGCTTTCGTCTTCTTTTGTGCCTTTTGAGCATCATCTAGA TGACCGGGAGATCCCCATGTATGGGGAGTCCTCGCGGCCTCGGGAGGAGT CGATGAGGGCGCACTTGCCTTTGGCGTCACCCAGCTTCCCTTCAGCTTGT CACTCCCAAACCCCAGCCCTCCAGCGACATTCAGCGCTCAGCATGGCAAA ACAAACCTTGCAGTTTGACGTTCAGGACTCTACCACCGGTGCTGTGCCAT CGCCAAACACAACCAGGCGTTCTGTGGTCCGGGCGGGGGCAGTAGCCGCA GTGTCGACGTCAGTTTACAAAGGCGTCAAGATGCACCAGTACAAGCAAGA GCAGCGAACCAAGCCAGGAAACGACGTAGATGGAAAGTCTGAGGCAACCT TGAATGCAGGACTGCGGTCGACTGCCAGCAATAGAGCAAAAGGAAGAGGA GAAGCCATGACGGCCGCGGACTGGAACGCCACCGTTGAGTCTGCTCCCCG CTGGTCGCAACTACGTTCCTACAGATTCATCCGATCGCTGGGCAAGGGTG CTCATGCCGAGGCAATCTTGATGGAGCGAGGAATCGGTGAAGAGCGAGGG CGACCCGAGCCGCAATGTGTGCTCAAAGTGAGCGAGTTCTTCTTGCCGGA GGCCATCAACGAGGCCCGCTTGCTGGGCCGACTCTCGGCCTCCCCATATG TGGTGCGTTTGGAGGACATGTTTATTGAGCAAGTGGGCGGTCGGCTTGTG TCATACTTGCAGTTGGAATACTGTGGCGGGGGTGACCTGAGCAGCGTGTT ACGAAGGTACACCGAAGTAAGTCATCATGCTCTTGACGACCTCAGTGTAC ACCGCCTGGCGAACCAGCTGCTGGCGGCTTTGGAGTCGCTGCATTCCCAA AATGTGATTCATAGGGACTTTAAGCCCGACAATATCCTGCTAACAGCTGA GGGAAGAGTGAAGCTCTGTGACTTTGGGATCGCCACCCGCTTGACGGACG CATGCTCTGGCTGGAACAACTTTGCTGCTGGATCCTTGCCCTTCATGAGT CCGGAGATCCGCCGCTTGTTGCAATATAAGAGTAGAGATGAAGACGACAA GGGCGGGGAGGAAGCGGTAGAAGTGGCAGCGTGCACGGACAAAGCGGACG TGTGGGCATTTGGTTGTGTGCTCTACGCCATGTGCCTTTCCACTCCCACG CCGAACTTGGTCAATGTTCCGGCATTGCAGGCCGTAGCGGAAGTATGTGG CCACCGGGGATGGCCGGCATTCGACTTTTCGCTGGGTCCATTAGGAATAA AAATGCCAGGGCTAATAGCGCAGCAGGTGTGTTGGCTCTTGACAATGGCC CTTGAGCCGGACCTAGTGCTTCGGCCCTCGGCGGTAGAGCTGAGGAGGGC GTTGACATCTTCTAAGGCTGACAGCGAGGAGAATGGGACGGGATTGGCTG CACGTTTGTAGAAAATGTGTAAATAGGTAACTTTATTTGTACGTATGAGA CCTGAATAAAAGAGTTAAAGAGAATATGATGCTTTTGCAAGACGCGAGCG ACATACAACGGGTAGACTTGTTCCCTCATTTACTTCGTTTGAAATTTATT CATCTGACAGTGCAACTCTTGCATCGCTTTCCACAACCACAGGGGTGTTG ATTTCCCTGAAGCACTCAAGAGAGCACTGCGGGATAGCGTCCAAGTCGAA TCGTTATGAGATCCGCACCTTTGATAAAGGGTATCCGGAGACTGTGAAGG CGGGTGCAAGAATAGCAGGAGGAGTGATTGTGCTAAATTACAGGCATTTT GGACACCAAACACTGGATCAGGCCCGAGAAGAAAACAGTTGCTACAGGTC GGCACTGGATGGTTATCAGGAAGTGATTTTATATTTAAAACTTCCAAGAT ATTGTCGGAACGTTTTTTTGAGAAAACTCGCCAGCAACTTATCTAAATTT TACCACAACGTCCGATATTTATCAGTGTAAATGCGGACTTGCAGAAGCAG GAGGCGCGTTTGCTTCCCCCAACGAACTGGGATACGGAGTTACGCTGATA ATTGGTATTAAAAGACGTTGTAACATGCGAAGGTTCAAGAGAGTGGCCAG ATTGAAAACATCAACTATGTGCAGAAAAATATTATCCACAATATTCATTC GGATGTTCGTGCGTTTTTTTTGGGATGTATTTTTGTAGGGAGTGAGAATA TACACTGAGTCTGGCAAACTGGTTCACAGAAAAATAGATGAAAGAGAAGT ATCGACATACACTGATATGAAAAGACTGCATGTTAAGAAATAAAGGTGAT AATGATTCAAGCTGGCCGCTTTCGTTGTTTATCTTTTCATATCGAAGATG TCCTTGTGATGGACACGAAGCCGTCGATATGGGAGTGATCAGTGACCAGT ACATGATAGGCACGAAGATTTGTAAGGGGTATGACTAGATTGAAAAGAAG CAGCCATACATATTTGAGGGAAAAAAAGGAACTATACGGGGGAGGCACCA GGAAAAAGTTGTTTGTACGTTATGTAGTCGGAAAACTTCACGAACTATAC CGCAGGACAAGTGAGGCAAACTTATAATTGTTTGTGGGTATTTGAGGAAT TTGCATACCATGCAATATTATGGGAAGGGAGGATACAGTCAGCCCTTGTT GCGTAAAAAACGACGATAAAATAATATTTCAACAAGGAAACCGAATTGGT GCCGAAAAGAGTCGTCGACGGTATGTTCTAATATATGTATATGGGCTAAA GTTCGTGAGAATGGTTTCGACTGTTGGAAGGTGATTTGTCATTTTCATAC GCATGCTCTGACATAAACCCGACAAGACGGTAGGAATGTGTGAGAAAAAG AAGGATTATGACGACCGCCGGCTGTCGAAAAGGGGAACAGCTCGTTCACC ACTATCTCGGTTGGCACTAACCCGTGCAACTTGACCTGTGTAAAAATGTT GCCTTTCAGTTTGCACTTTTGTCTTTCAGTCGGTTTTTTGCTTTCGGGCT AGTTTCTTTCGTAGCGCAATGTATAATGCATCGGGGGAGACTTACCCCGG AACTAGAGACACTGGCTCTTCTCAATCCAAAAGCTGCACACCGGTTATGT AGAGGAGTGAGATTGGCGAGAAATCCACAACCCCCTGTGCGACAAAGCGC AGAAATCGCGTGTAGCGTCCTAATCCTTGTCGTGCACGGCGAGTTGAATG ATTTCAGGATTTTTAACGAAGAGCTTTGATGCCGGAAAATGGACAAAAAG GCATGCATCCAAGCTCACGACTCAAGGCTTGCAGGCTGCAAGTTGCAGCC ATTTCATTTCCTAACCTTCCCAAAGGGCTCCGAGCTCTTTCCCCGACGAG TCCATATGAAACAGTTTGCAGCGCAGACCAATTTTTACATGCTGATCCCC CTTCGGCTACCGCTAAAAACCTTGTTAGCATCAATTCACCGTCAAAACCA AATGCTTTGTGTACAACACATCTCGGAGATTAATACACCACCCTCTCAGC CAATAGGGGGTGTGTTCAACTCCGCGCCCGTAAATAGCAGCCACTCTTAA ATAATTATTTAAGAGCTCTATTTAATTGTCGGCCCAGGTG back to topprotein sequence of jgi.p|Nanoce1779_2|601979 >mRNA_8427-protein ID=mRNA_8427-protein|Name=jgi.p|Nanoce1779_2|601979|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp MWSQQRGNAVPLHTYRSALLAGGAECKIGGHCHDHVRMLSMHNPMKDELL GFGVGHCRFIVQGPSHMLLQGFRAGAAAAALIVVPTPPSSSFSTLSSSFV PFEHHLDDREIPMYGESSRPREESMRAHLPLASPSFPSACHSQTPALQRH SALSMAKQTLQFDVQDSTTGAVPSPNTTRRSVVRAGAVAAVSTSVYKGVK MHQYKQEQRTKPGNDVDGKSEATLNAGLRSTASNRAKGRGEAMTAADWNA TVESAPRWSQLRSYRFIRSLGKGAHAEAILMERGIGEERGRPEPQCVLKV SEFFLPEAINEARLLGRLSASPYVVRLEDMFIEQVGGRLVSYLQLEYCGG GDLSSVLRRYTEVSHHALDDLSVHRLANQLLAALESLHSQNVIHRDFKPD NILLTAEGRVKLCDFGIATRLTDACSGWNNFAAGSLPFMSPEIRRLLQYK SRDEDDKGGEEAVEVAACTDKADVWAFGCVLYAMCLSTPTPNLVNVPALQ AVAEVCGHRGWPAFDFSLGPLGIKMPGLIAQQVCWLLTMALEPDLVLRPS AVELRRALTSSKADSEENGTGLAARL* back to topmRNA from alignment at scaffold_24:235283..239372- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8427 ID=mRNA_8427|Name=jgi.p|Nanoce1779_2|601979|organism=Nannochloropsis oceanica|type=mRNA|length=4090bp|location=Sequence derived from alignment at scaffold_24:235283..239372- (Nannochloropsis oceanica) ACAGTCAGGGCCGACTACTTATAGCAGCTTAGCTCTGTTGCTGGGACAGA
AATACCGACGGGCCGCCCATTTTCTCACGTCACATTGAAGGTCCCGTGTG
GCAAAAACGGGACTCTGGACTCGCAGCGTCACCTTGGCGAAGCAGGAGGG
TTGTCGCACATTACGAACGACGAGCCTGAAGGTGTGTGTGAGCCAGTAGA
GCCCAAAGCATTCAGCAAAGAGAGGGGAGGATGTGGAGTCAGCAGCGGGG
TAACGCTGTACCCTTGCACACGTACCGCAGCGCTCTACTAGCGGGAGGGG
CTGAGTGTAAGATTGGCGGGCACTGTCACGATCATGTCCGGATGCTTTCA
ATGCATAATCCGATGAAGGATGAATTGCTAGGCTTTGGTGTTGGTCATTG
CCGCTTCATCGTGCAAGGCCCTTCTCATATGCTGCTGCAAGGCTTTCGGG
CAGGCGCCGCTGCCGCTGCATTGATTGTGGTACCCACCCCACCGTCCTCA
TCCTTCTCAACGCTTTCGTCTTCTTTTGTGCCTTTTGAGCATCATCTAGA
TGACCGGGAGATCCCCATGTATGGGGAGTCCTCGCGGCCTCGGGAGGAGT
CGATGAGGGCGCACTTGCCTTTGGCGTCACCCAGCTTCCCTTCAGCTTGT
CACTCCCAAACCCCAGCCCTCCAGCGACATTCAGCGCTCAGCATGGCAAA
ACAAACCTTGCAGTTTGACGTTCAGGACTCTACCACCGGTGCTGTGCCAT
CGCCAAACACAACCAGGCGTTCTGTGGTCCGGGCGGGGGCAGTAGCCGCA
GTGTCGACGTCAGTTTACAAAGGCGTCAAGATGCACCAGTACAAGCAAGA
GCAGCGAACCAAGCCAGGAAACGACGTAGATGGAAAGTCTGAGGCAACCT
TGAATGCAGGACTGCGGTCGACTGCCAGCAATAGAGCAAAAGGAAGAGGA
GAAGCCATGACGGCCGCGGACTGGAACGCCACCGTTGAGTCTGCTCCCCG
CTGGTCGCAACTACGTTCCTACAGATTCATCCGATCGCTGGGCAAGGGTG
CTCATGCCGAGGCAATCTTGATGGAGCGAGGAATCGGTGAAGAGCGAGGG
CGACCCGAGCCGCAATGTGTGCTCAAAGTGAGCGAGTTCTTCTTGCCGGA
GGCCATCAACGAGGCCCGCTTGCTGGGCCGACTCTCGGCCTCCCCATATG
TGGTGCGTTTGGAGGACATGTTTATTGAGCAAGTGGGCGGTCGGCTTGTG
TCATACTTGCAGTTGGAATACTGTGGCGGGGGTGACCTGAGCAGCGTGTT
ACGAAGGTACACCGAAGTAAGTCATCATGCTCTTGACGACCTCAGTGTAC
ACCGCCTGGCGAACCAGCTGCTGGCGGCTTTGGAGTCGCTGCATTCCCAA
AATGTGATTCATAGGGACTTTAAGCCCGACAATATCCTGCTAACAGCTGA
GGGAAGAGTGAAGCTCTGTGACTTTGGGATCGCCACCCGCTTGACGGACG
CATGCTCTGGCTGGAACAACTTTGCTGCTGGATCCTTGCCCTTCATGAGT
CCGGAGATCCGCCGCTTGTTGCAATATAAGAGTAGAGATGAAGACGACAA
GGGCGGGGAGGAAGCGGTAGAAGTGGCAGCGTGCACGGACAAAGCGGACG
TGTGGGCATTTGGTTGTGTGCTCTACGCCATGTGCCTTTCCACTCCCACG
CCGAACTTGGTCAATGTTCCGGCATTGCAGGCCGTAGCGGAAGTATGTGG
CCACCGGGGATGGCCGGCATTCGACTTTTCGCTGGGTCCATTAGGAATAA
AAATGCCAGGGCTAATAGCGCAGCAGGTGTGTTGGCTCTTGACAATGGCC
CTTGAGCCGGACCTAGTGCTTCGGCCCTCGGCGGTAGAGCTGAGGAGGGC
GTTGACATCTTCTAAGGCTGACAGCGAGGAGAATGGGACGGGATTGGCTG
CACGTTTGTAGAAAATGTGTAAATAGGTAACTTTATTTGTACGTATGAGA
CCTGAATAAAAGAGTTAAAGAGAATATGATGCTTTTGCAAGACGCGAGCG
ACATACAACGGGTAGACTTGTTCCCTCATTTACTTCGTTTGAAATTTATT
CATCTGACAGTGCAACTCTTGCATCGCTTTCCACAACCACAGGGGTGTTG
ATTTCCCTGAAGCACTCAAGAGAGCACTGCGGGATAGCGTCCAAGTCGAA
TCGTTATGAGATCCGCACCTTTGATAAAGGGTATCCGGAGACTGTGAAGG
CGGGTGCAAGAATAGCAGGAGGAGTGATTGTGCTAAATTACAGGCATTTT
GGACACCAAACACTGGATCAGGCCCGAGAAGAAAACAGTTGCTACAGGTC
GGCACTGGATGGTTATCAGGAAGTGATTTTATATTTAAAACTTCCAAGAT
ATTGTCGGAACGTTTTTTTGAGAAAACTCGCCAGCAACTTATCTAAATTT
TACCACAACGTCCGATATTTATCAGTGTAAATGCGGACTTGCAGAAGCAG
GAGGCGCGTTTGCTTCCCCCAACGAACTGGGATACGGAGTTACGCTGATA
ATTGGTATTAAAAGACGTTGTAACATGCGAAGGTTCAAGAGAGTGGCCAG
ATTGAAAACATCAACTATGTGCAGAAAAATATTATCCACAATATTCATTC
GGATGTTCGTGCGTTTTTTTTGGGATGTATTTTTGTAGGGAGTGAGAATA
TACACTGAGTCTGGCAAACTGGTTCACAGAAAAATAGATGAAAGAGAAGT
ATCGACATACACTGATATGAAAAGACTGCATGTTAAGAAATAAAGGTGAT
AATGATTCAAGCTGGCCGCTTTCGTTGTTTATCTTTTCATATCGAAGATG
TCCTTGTGATGGACACGAAGCCGTCGATATGGGAGTGATCAGTGACCAGT
ACATGATAGGCACGAAGATTTGTAAGGGGTATGACTAGATTGAAAAGAAG
CAGCCATACATATTTGAGGGAAAAAAAGGAACTATACGGGGGAGGCACCA
GGAAAAAGTTGTTTGTACGTTATGTAGTCGGAAAACTTCACGAACTATAC
CGCAGGACAAGTGAGGCAAACTTATAATTGTTTGTGGGTATTTGAGGAAT
TTGCATACCATGCAATATTATGGGAAGGGAGGATACAGTCAGCCCTTGTT
GCGTAAAAAACGACGATAAAATAATATTTCAACAAGGAAACCGAATTGGT
GCCGAAAAGAGTCGTCGACGGTATGTTCTAATATATGTATATGGGCTAAA
GTTCGTGAGAATGGTTTCGACTGTTGGAAGGTGATTTGTCATTTTCATAC
GCATGCTCTGACATAAACCCGACAAGACGGTAGGAATGTGTGAGAAAAAG
AAGGATTATGACGACCGCCGGCTGTCGAAAAGGGGAACAGCTCGTTCACC
ACTATCTCGGTTGGCACTAACCCGTGCAACTTGACCTGTGTAAAAATGTT
GCCTTTCAGTTTGCACTTTTGTCTTTCAGTCGGTTTTTTGCTTTCGGGCT
AGTTTCTTTCGTAGCGCAATGTATAATGCATCGGGGGAGACTTACCCCGG
AACTAGAGACACTGGCTCTTCTCAATCCAAAAGCTGCACACCGGTTATGT
AGAGGAGTGAGATTGGCGAGAAATCCACAACCCCCTGTGCGACAAAGCGC
AGAAATCGCGTGTAGCGTCCTAATCCTTGTCGTGCACGGCGAGTTGAATG
ATTTCAGGATTTTTAACGAAGAGCTTTGATGCCGGAAAATGGACAAAAAG
GCATGCATCCAAGCTCACGACTCAAGGCTTGCAGGCTGCAAGTTGCAGCC
ATTTCATTTCCTAACCTTCCCAAAGGGCTCCGAGCTCTTTCCCCGACGAG
TCCATATGAAACAGTTTGCAGCGCAGACCAATTTTTACATGCTGATCCCC
CTTCGGCTACCGCTAAAAACCTTGTTAGCATCAATTCACCGTCAAAACCA
AATGCTTTGTGTACAACACATCTCGGAGATTAATACACCACCCTCTCAGC
CAATAGGGGGTGTGTTCAACTCCGCGCCCGTAAATAGCAGCCACTCTTAA
ATAATTATTTAAGAGCTCTATTTAATTGTCGGCCCAGGTG back to topCoding sequence (CDS) from alignment at scaffold_24:235283..239372- >mRNA_8427 ID=mRNA_8427|Name=jgi.p|Nanoce1779_2|601979|organism=Nannochloropsis oceanica|type=CDS|length=1731bp|location=Sequence derived from alignment at scaffold_24:235283..239372- (Nannochloropsis oceanica) ATGTGGAGTCAGCAGCGGGGTAACGCTGTACCCTTGCACACGTACCGCAG CGCTCTACTAGCGGGAGGGGCTGAGTGTAAGATTGGCGGGCACTGTCACG ATCATGTCCGGATGCTTTCAATGCATAATCCGATGAAGGATGAATTGCTA GGCTTTGGTGTTGGTCATTGCCGCTTCATCGTGCAAGGCCCTTCTCATAT GCTGCTGCAAGGCTTTCGGGCAGGCGCCGCTGCCGCTGCATTGATTGTGG TACCCACCCCACCGTCCTCATCCTTCTCAACGCTTTCGTCTTCTTTTGTG CCTTTTGAGCATCATCTAGATGACCGGGAGATCCCCATGTATGGGGAGTC CTCGCGGCCTCGGGAGGAGTCGATGAGGGCGCACTTGCCTTTGGCGTCAC CCAGCTTCCCTTCAGCTTGTCACTCCCAAACCCCAGCCCTCCAGCGACAT TCAGCGCTCAGCATGGCAAAACAAACCTTGCAGTTTGACGTTCAGGACTC TACCACCGGTGCTGTGCCATCGCCAAACACAACCAGGCGTTCTGTGGTCC GGGCGGGGGCAGTAGCCGCAGTGTCGACGTCAGTTTACAAAGGCGTCAAG ATGCACCAGTACAAGCAAGAGCAGCGAACCAAGCCAGGAAACGACGTAGA TGGAAAGTCTGAGGCAACCTTGAATGCAGGACTGCGGTCGACTGCCAGCA ATAGAGCAAAAGGAAGAGGAGAAGCCATGACGGCCGCGGACTGGAACGCC ACCGTTGAGTCTGCTCCCCGCTGGTCGCAACTACGTTCCTACAGATTCAT CCGATCGCTGGGCAAGGGTGCTCATGCCGAGGCAATCTTGATGGAGCGAG GAATCGGTGAAGAGCGAGGGCGACCCGAGCCGCAATGTGTGCTCAAAGTG AGCGAGTTCTTCTTGCCGGAGGCCATCAACGAGGCCCGCTTGCTGGGCCG ACTCTCGGCCTCCCCATATGTGGTGCGTTTGGAGGACATGTTTATTGAGC AAGTGGGCGGTCGGCTTGTGTCATACTTGCAGTTGGAATACTGTGGCGGG GGTGACCTGAGCAGCGTGTTACGAAGGTACACCGAAGTAAGTCATCATGC TCTTGACGACCTCAGTGTACACCGCCTGGCGAACCAGCTGCTGGCGGCTT TGGAGTCGCTGCATTCCCAAAATGTGATTCATAGGGACTTTAAGCCCGAC AATATCCTGCTAACAGCTGAGGGAAGAGTGAAGCTCTGTGACTTTGGGAT CGCCACCCGCTTGACGGACGCATGCTCTGGCTGGAACAACTTTGCTGCTG GATCCTTGCCCTTCATGAGTCCGGAGATCCGCCGCTTGTTGCAATATAAG AGTAGAGATGAAGACGACAAGGGCGGGGAGGAAGCGGTAGAAGTGGCAGC GTGCACGGACAAAGCGGACGTGTGGGCATTTGGTTGTGTGCTCTACGCCA TGTGCCTTTCCACTCCCACGCCGAACTTGGTCAATGTTCCGGCATTGCAG GCCGTAGCGGAAGTATGTGGCCACCGGGGATGGCCGGCATTCGACTTTTC GCTGGGTCCATTAGGAATAAAAATGCCAGGGCTAATAGCGCAGCAGGTGT GTTGGCTCTTGACAATGGCCCTTGAGCCGGACCTAGTGCTTCGGCCCTCG GCGGTAGAGCTGAGGAGGGCGTTGACATCTTCTAAGGCTGACAGCGAGGA GAATGGGACGGGATTGGCTGCACGTTTGTAG back to top
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