jgi.p|Nanoce1779_2|601970, mRNA_8424 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601970
Unique Name	mRNA_8424
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	959
Alignment location	scaffold_24:232085..233043 -

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Properties


Property Name	Value
TranscriptId	602056
Track	FilteredModels2
ProteinId	601970

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:232085..233043 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601970	gene_8424	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601970	mRNA_8424-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8424	CDS_8424	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:232085..233043-
coding sequence from alignment at scaffold_24:232085..233043-

mRNA sequence

>mRNA_8424 ID=mRNA_8424|Name=jgi.p|Nanoce1779_2|601970|organism=Nannochloropsis oceanica|type=mRNA|length=959bp
ACAGGGGGAGGACAGCATTATCGGTAACGTACGACAACACGTGTTAGACG
AACGTGAATTCAGCAGCGCAATTTTCCCTGGCATTTATGCAACCTCTTCG
TCTTCCTCAATGTGGCACATCTCGGTCCATACCCGTAGCTGTCTCCCTAC
ACGCACGTCCCTGCTTCTCCCGGAAGACCGTGGCTCTTTTATCATCCTTA
CATCTGTGCCCCCGCTCCGTGCTTTCCCGTTTAAGGTCGAGAGCTCTGGC
TTTCCCTCGATCCCATTTATTCCCCCCCACATCCTCCTATACTACAGGAC
GCGACTGCAGAATTCATGAAGCGACGAACCCACCATTCGCTGCTGCTGGG
TCAGTCTTTCTCACCCGCCTTCACATCTGCATTCCTTCCCTGTCTTGAAA
GTCCGCGTCCCTTTTATCATCGCACCCGTAGTCCCAAGTTGTCTGCTCTG
CCCCCTGGCTCATTTCTTCAGACCACTTCGACAAACACGTTTCTGGCCGA
AATGACAGAAGACTATGGCTTTATCGCGCCGACGTTCGAGGCACGTTTGG
ATGTGGGTGCACTCTTCTCGTTAGTGGTCATGTCCGTGGTCGTGTCTTTG
TTCTGGTTAAGAGTCGCGACTGCCATTACAGATCGTGAGAAGAGGGAAAA
GGTGGAGAAGATTCAAAAGGAAGTCCGGCTCAAAAGGCTGACGGGGAGGA
TGAATGCCGAAGATGAAGAGGAACTGCGACTAGCAGAGGAGGAACGGGCC
AAGCCAGCATTGGGCCTTGGAGTTGGATCTTTTCTGCGGAATTTCCGCTT
GATCAACGAAGGCGGGAAGAGACAAGATGGCGAAGGTGGCAACGACGGCA
GCAACGACAAATAAAAGTAAGGAGAGAATTAAAATTGGGTTTGATAGTCG
TTTGTATCCGGATTGCCTATATTTTTTTCTCGGCAGGGTTATTGCCCTGT
AGGAAAAAA

protein sequence of jgi.p|Nanoce1779_2|601970

>mRNA_8424-protein ID=mRNA_8424-protein|Name=jgi.p|Nanoce1779_2|601970|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MKRRTHHSLLLGQSFSPAFTSAFLPCLESPRPFYHRTRSPKLSALPPGSF
LQTTSTNTFLAEMTEDYGFIAPTFEARLDVGALFSLVVMSVVVSLFWLRV
ATAITDREKREKVEKIQKEVRLKRLTGRMNAEDEEELRLAEEERAKPALG
LGVGSFLRNFRLINEGGKRQDGEGGNDGSNDK*

mRNA from alignment at scaffold_24:232085..233043-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8424 ID=mRNA_8424|Name=jgi.p|Nanoce1779_2|601970|organism=Nannochloropsis oceanica|type=mRNA|length=959bp|location=Sequence derived from alignment at scaffold_24:232085..233043- (Nannochloropsis oceanica)
ACAGGGGGAGGACAGCATTATCGGTAACGTACGACAACACGTGTTAGACG
AACGTGAATTCAGCAGCGCAATTTTCCCTGGCATTTATGCAACCTCTTCG
TCTTCCTCAATGTGGCACATCTCGGTCCATACCCGTAGCTGTCTCCCTAC
ACGCACGTCCCTGCTTCTCCCGGAAGACCGTGGCTCTTTTATCATCCTTA
CATCTGTGCCCCCGCTCCGTGCTTTCCCGTTTAAGGTCGAGAGCTCTGGC
TTTCCCTCGATCCCATTTATTCCCCCCCACATCCTCCTATACTACAGGAC
GCGACTGCAGAATTCATGAAGCGACGAACCCACCATTCGCTGCTGCTGGG
TCAGTCTTTCTCACCCGCCTTCACATCTGCATTCCTTCCCTGTCTTGAAA
GTCCGCGTCCCTTTTATCATCGCACCCGTAGTCCCAAGTTGTCTGCTCTG
CCCCCTGGCTCATTTCTTCAGACCACTTCGACAAACACGTTTCTGGCCGA
AATGACAGAAGACTATGGCTTTATCGCGCCGACGTTCGAGGCACGTTTGG
ATGTGGGTGCACTCTTCTCGTTAGTGGTCATGTCCGTGGTCGTGTCTTTG
TTCTGGTTAAGAGTCGCGACTGCCATTACAGATCGTGAGAAGAGGGAAAA
GGTGGAGAAGATTCAAAAGGAAGTCCGGCTCAAAAGGCTGACGGGGAGGA
TGAATGCCGAAGATGAAGAGGAACTGCGACTAGCAGAGGAGGAACGGGCC
AAGCCAGCATTGGGCCTTGGAGTTGGATCTTTTCTGCGGAATTTCCGCTT
GATCAACGAAGGCGGGAAGAGACAAGATGGCGAAGGTGGCAACGACGGCA
GCAACGACAAATAAAAGTAAGGAGAGAATTAAAATTGGGTTTGATAGTCG
TTTGTATCCGGATTGCCTATATTTTTTTCTCGGCAGGGTTATTGCCCTGT
AGGAAAAAA

Coding sequence (CDS) from alignment at scaffold_24:232085..233043-

>mRNA_8424 ID=mRNA_8424|Name=jgi.p|Nanoce1779_2|601970|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_24:232085..233043- (Nannochloropsis oceanica)
ATGAAGCGACGAACCCACCATTCGCTGCTGCTGGGTCAGTCTTTCTCACC
CGCCTTCACATCTGCATTCCTTCCCTGTCTTGAAAGTCCGCGTCCCTTTT
ATCATCGCACCCGTAGTCCCAAGTTGTCTGCTCTGCCCCCTGGCTCATTT
CTTCAGACCACTTCGACAAACACGTTTCTGGCCGAAATGACAGAAGACTA
TGGCTTTATCGCGCCGACGTTCGAGGCACGTTTGGATGTGGGTGCACTCT
TCTCGTTAGTGGTCATGTCCGTGGTCGTGTCTTTGTTCTGGTTAAGAGTC
GCGACTGCCATTACAGATCGTGAGAAGAGGGAAAAGGTGGAGAAGATTCA
AAAGGAAGTCCGGCTCAAAAGGCTGACGGGGAGGATGAATGCCGAAGATG
AAGAGGAACTGCGACTAGCAGAGGAGGAACGGGCCAAGCCAGCATTGGGC
CTTGGAGTTGGATCTTTTCTGCGGAATTTCCGCTTGATCAACGAAGGCGG
GAAGAGACAAGATGGCGAAGGTGGCAACGACGGCAGCAACGACAAATAA

Synonyms

Publications