jgi.p|Nanoce1779_2|568446, mRNA_8418 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568446
Unique Name	mRNA_8418
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1641
Alignment location	scaffold_24:211657..213297 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568532
Track	FilteredModels2
ProteinId	568446

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:211657..213297 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568446	gene_8418	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8418	CDS_8418	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568446	mRNA_8418-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:211657..213297-
coding sequence from alignment at scaffold_24:211657..213297-

mRNA sequence

>mRNA_8418 ID=mRNA_8418|Name=jgi.p|Nanoce1779_2|568446|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp
ATGGCCTTGTTATACCAATCCCCTGCATCGGGCTCGTCCTCCTCCTTTGC
CGTCGAACAACAACAGGACAACTATGATTGGCATTCTTCGAGCCATGTCG
GCAGTGGTCATTCAGACGCGGATATGTTTGTGTCGTCCTCTGAGCCCTCC
CCGCCACGCTCTCACCTAGATGGAGGCGATCCGCTCGGCTCCCAATATAA
GTCTCCGATGCAATTTCAGAACGCAATGGATTTGGTACAGCGCTTGCAAG
CTCAGCTCAAGACGGTCCGATTAGATAAAGACCGCCTCAAGGAACGATGC
TTCTTGTTGGAACGGGAAGTGAAAGACAACCTGCGGCATCACTACCCTTC
CTCCACGTCCTATGCCCCACCTTTGCCGATGCCCGCCATCTCTCCTCCTT
CAACCACCACCGCTCATAAATTTGGTTGGCCGTACGAAAACTATCCCCTT
CACAAATATCAGATACTGGAAAAAACTTTAGCCGAAGAACGGGTAACCCG
CAGTGACTTACAAGCTCGCCTTGCGAAGGCGGAAGCTCAGCTCAAAAGCC
GCGACAAGGAGGTGCATTCCCTACAAAAGCGGTTACGCACTTCCCAAGGA
GCATTACGAGAGATGGAAACCAAGTTTCTGTCTGACTTGTCAAGGTTATT
TAAGTCGGTCCAATCACAGGAGGATGTGGGCGAGAGGGTCAAGTGGGAGA
GAGAGTTGGGGTTGGCATTGGCAGAGGTGAGGAGGCTGAGAGAGGAATTA
GGTTGTCGAAGCTCAGCGCGGAAGGAAGAGCGGCAGAAGCACAATGATAC
AAGAATAACGGCTACGATCAGCAAGACAACAAATCCGTTGGGAGGAGGGA
AGAGGAAGAGCGAGAAAGGCAGAAGGCGGGAGCAGGAGAAGGAATGGAAC
CGCCTCCAAGAAAAGGTATTGAGACAAGCTGAAAGAATACATGCCGATAA
GAAGCTGATCAGACGCTTGAAAAAGGAAAGAGGACGTGCCGAAGAAGAGG
AAGGAGAGAGAATAGAGGAGCTGCTGGCGTCAAGAGAGGCACAGAAGGGC
TTGACAGCAGAGCTGGCTGTCTCGGCACAGCGGCATGAGGAGGATCTGGA
GTACGAATTACAAAAGGGAGTTGAAACGACTAGAGCCGTTCGAGTGCTGG
AGGAGGAGACGGAGAAGGAGAGGAAGGGAGAAGGGTTGGGGGACGGGTGG
GTACTGGTGAATGTGGAACGAGAGGGGGAGGAAGATTTCCGGTGGCGATG
CAATAAGGAGAAGAATAAGAAAGGGGAGAGTGCTGGCCAGAAAGAGAAAG
AGGTAGCTTCGTATCACCATCACCGACACCGTCACCATCATCATAATGAT
CGCCAGGAGGAGGAAGAAGAGAAACAGCGAGACGCACCAAACCAGCTCTA
CAGCCACCACCATCGTGATCACCACCAGCAATGGGACCACCACCACCTGC
AGCAGCAGCAGTCGTCGTCTCAGGTCCGCAGAAAGAGCAGGACAAACGCA
GGGAAGATCCGGACGTCTGCCAGGTCAACGCCGCCACGGACCAAGCCGCA
GGCCTGGGAGATCAATTTCCCTCCGGGCAAGAAAGAGTATGAGGTGTCGC
CCCTTAATCACCGGTTTGAGACGCTCGATGATGGGAAATAA

protein sequence of jgi.p|Nanoce1779_2|568446

>mRNA_8418-protein ID=mRNA_8418-protein|Name=jgi.p|Nanoce1779_2|568446|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MALLYQSPASGSSSSFAVEQQQDNYDWHSSSHVGSGHSDADMFVSSSEPS
PPRSHLDGGDPLGSQYKSPMQFQNAMDLVQRLQAQLKTVRLDKDRLKERC
FLLEREVKDNLRHHYPSSTSYAPPLPMPAISPPSTTTAHKFGWPYENYPL
HKYQILEKTLAEERVTRSDLQARLAKAEAQLKSRDKEVHSLQKRLRTSQG
ALREMETKFLSDLSRLFKSVQSQEDVGERVKWERELGLALAEVRRLREEL
GCRSSARKEERQKHNDTRITATISKTTNPLGGGKRKSEKGRRREQEKEWN
RLQEKVLRQAERIHADKKLIRRLKKERGRAEEEEGERIEELLASREAQKG
LTAELAVSAQRHEEDLEYELQKGVETTRAVRVLEEETEKERKGEGLGDGW
VLVNVEREGEEDFRWRCNKEKNKKGESAGQKEKEVASYHHHRHRHHHHND
RQEEEEEKQRDAPNQLYSHHHRDHHQQWDHHHLQQQQSSSQVRRKSRTNA
GKIRTSARSTPPRTKPQAWEINFPPGKKEYEVSPLNHRFETLDDGK*

mRNA from alignment at scaffold_24:211657..213297-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8418 ID=mRNA_8418|Name=jgi.p|Nanoce1779_2|568446|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at scaffold_24:211657..213297- (Nannochloropsis oceanica)
ATGGCCTTGTTATACCAATCCCCTGCATCGGGCTCGTCCTCCTCCTTTGC
CGTCGAACAACAACAGGACAACTATGATTGGCATTCTTCGAGCCATGTCG
GCAGTGGTCATTCAGACGCGGATATGTTTGTGTCGTCCTCTGAGCCCTCC
CCGCCACGCTCTCACCTAGATGGAGGCGATCCGCTCGGCTCCCAATATAA
GTCTCCGATGCAATTTCAGAACGCAATGGATTTGGTACAGCGCTTGCAAG
CTCAGCTCAAGACGGTCCGATTAGATAAAGACCGCCTCAAGGAACGATGC
TTCTTGTTGGAACGGGAAGTGAAAGACAACCTGCGGCATCACTACCCTTC
CTCCACGTCCTATGCCCCACCTTTGCCGATGCCCGCCATCTCTCCTCCTT
CAACCACCACCGCTCATAAATTTGGTTGGCCGTACGAAAACTATCCCCTT
CACAAATATCAGATACTGGAAAAAACTTTAGCCGAAGAACGGGTAACCCG
CAGTGACTTACAAGCTCGCCTTGCGAAGGCGGAAGCTCAGCTCAAAAGCC
GCGACAAGGAGGTGCATTCCCTACAAAAGCGGTTACGCACTTCCCAAGGA
GCATTACGAGAGATGGAAACCAAGTTTCTGTCTGACTTGTCAAGGTTATT
TAAGTCGGTCCAATCACAGGAGGATGTGGGCGAGAGGGTCAAGTGGGAGA
GAGAGTTGGGGTTGGCATTGGCAGAGGTGAGGAGGCTGAGAGAGGAATTA
GGTTGTCGAAGCTCAGCGCGGAAGGAAGAGCGGCAGAAGCACAATGATAC
AAGAATAACGGCTACGATCAGCAAGACAACAAATCCGTTGGGAGGAGGGA
AGAGGAAGAGCGAGAAAGGCAGAAGGCGGGAGCAGGAGAAGGAATGGAAC
CGCCTCCAAGAAAAGGTATTGAGACAAGCTGAAAGAATACATGCCGATAA
GAAGCTGATCAGACGCTTGAAAAAGGAAAGAGGACGTGCCGAAGAAGAGG
AAGGAGAGAGAATAGAGGAGCTGCTGGCGTCAAGAGAGGCACAGAAGGGC
TTGACAGCAGAGCTGGCTGTCTCGGCACAGCGGCATGAGGAGGATCTGGA
GTACGAATTACAAAAGGGAGTTGAAACGACTAGAGCCGTTCGAGTGCTGG
AGGAGGAGACGGAGAAGGAGAGGAAGGGAGAAGGGTTGGGGGACGGGTGG
GTACTGGTGAATGTGGAACGAGAGGGGGAGGAAGATTTCCGGTGGCGATG
CAATAAGGAGAAGAATAAGAAAGGGGAGAGTGCTGGCCAGAAAGAGAAAG
AGGTAGCTTCGTATCACCATCACCGACACCGTCACCATCATCATAATGAT
CGCCAGGAGGAGGAAGAAGAGAAACAGCGAGACGCACCAAACCAGCTCTA
CAGCCACCACCATCGTGATCACCACCAGCAATGGGACCACCACCACCTGC
AGCAGCAGCAGTCGTCGTCTCAGGTCCGCAGAAAGAGCAGGACAAACGCA
GGGAAGATCCGGACGTCTGCCAGGTCAACGCCGCCACGGACCAAGCCGCA
GGCCTGGGAGATCAATTTCCCTCCGGGCAAGAAAGAGTATGAGGTGTCGC
CCCTTAATCACCGGTTTGAGACGCTCGATGATGGGAAATAA

Coding sequence (CDS) from alignment at scaffold_24:211657..213297-

>mRNA_8418 ID=mRNA_8418|Name=jgi.p|Nanoce1779_2|568446|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at scaffold_24:211657..213297- (Nannochloropsis oceanica)
ATGGCCTTGTTATACCAATCCCCTGCATCGGGCTCGTCCTCCTCCTTTGC
CGTCGAACAACAACAGGACAACTATGATTGGCATTCTTCGAGCCATGTCG
GCAGTGGTCATTCAGACGCGGATATGTTTGTGTCGTCCTCTGAGCCCTCC
CCGCCACGCTCTCACCTAGATGGAGGCGATCCGCTCGGCTCCCAATATAA
GTCTCCGATGCAATTTCAGAACGCAATGGATTTGGTACAGCGCTTGCAAG
CTCAGCTCAAGACGGTCCGATTAGATAAAGACCGCCTCAAGGAACGATGC
TTCTTGTTGGAACGGGAAGTGAAAGACAACCTGCGGCATCACTACCCTTC
CTCCACGTCCTATGCCCCACCTTTGCCGATGCCCGCCATCTCTCCTCCTT
CAACCACCACCGCTCATAAATTTGGTTGGCCGTACGAAAACTATCCCCTT
CACAAATATCAGATACTGGAAAAAACTTTAGCCGAAGAACGGGTAACCCG
CAGTGACTTACAAGCTCGCCTTGCGAAGGCGGAAGCTCAGCTCAAAAGCC
GCGACAAGGAGGTGCATTCCCTACAAAAGCGGTTACGCACTTCCCAAGGA
GCATTACGAGAGATGGAAACCAAGTTTCTGTCTGACTTGTCAAGGTTATT
TAAGTCGGTCCAATCACAGGAGGATGTGGGCGAGAGGGTCAAGTGGGAGA
GAGAGTTGGGGTTGGCATTGGCAGAGGTGAGGAGGCTGAGAGAGGAATTA
GGTTGTCGAAGCTCAGCGCGGAAGGAAGAGCGGCAGAAGCACAATGATAC
AAGAATAACGGCTACGATCAGCAAGACAACAAATCCGTTGGGAGGAGGGA
AGAGGAAGAGCGAGAAAGGCAGAAGGCGGGAGCAGGAGAAGGAATGGAAC
CGCCTCCAAGAAAAGGTATTGAGACAAGCTGAAAGAATACATGCCGATAA
GAAGCTGATCAGACGCTTGAAAAAGGAAAGAGGACGTGCCGAAGAAGAGG
AAGGAGAGAGAATAGAGGAGCTGCTGGCGTCAAGAGAGGCACAGAAGGGC
TTGACAGCAGAGCTGGCTGTCTCGGCACAGCGGCATGAGGAGGATCTGGA
GTACGAATTACAAAAGGGAGTTGAAACGACTAGAGCCGTTCGAGTGCTGG
AGGAGGAGACGGAGAAGGAGAGGAAGGGAGAAGGGTTGGGGGACGGGTGG
GTACTGGTGAATGTGGAACGAGAGGGGGAGGAAGATTTCCGGTGGCGATG
CAATAAGGAGAAGAATAAGAAAGGGGAGAGTGCTGGCCAGAAAGAGAAAG
AGGTAGCTTCGTATCACCATCACCGACACCGTCACCATCATCATAATGAT
CGCCAGGAGGAGGAAGAAGAGAAACAGCGAGACGCACCAAACCAGCTCTA
CAGCCACCACCATCGTGATCACCACCAGCAATGGGACCACCACCACCTGC
AGCAGCAGCAGTCGTCGTCTCAGGTCCGCAGAAAGAGCAGGACAAACGCA
GGGAAGATCCGGACGTCTGCCAGGTCAACGCCGCCACGGACCAAGCCGCA
GGCCTGGGAGATCAATTTCCCTCCGGGCAAGAAAGAGTATGAGGTGTCGC
CCCTTAATCACCGGTTTGAGACGCTCGATGATGGGAAATAA

Synonyms

Publications