jgi.p|Nanoce1779_2|601941, mRNA_8417 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601941
Unique NamemRNA_8417
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length708
Alignment locationscaffold_24:210823..211530 +

Link to JBrowse

Properties
Property NameValue
TranscriptId602027
TrackFilteredModels2
ProteinId601941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:210823..211530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601941gene_8417Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601941mRNA_8417-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8417CDS_8417Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8417 ID=mRNA_8417|Name=jgi.p|Nanoce1779_2|601941|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
CAGGTAGATCAATCACACGCACTGAACCAGCATGAACTTCCTCCGCCTGG
GCAGCAGCAGCAGTCGCAGCAGCAGCACCATGGCCAGCCGCATCCGCCCT
CGCCAGCCAGCCTCTTCTGCCTCTTCCTCCGCCTCGTGGTCTCGTACCCA
CCTTCCTGTCCTTAATACGCTTAGCTACAAGATATCTACGGCCCGGTCAT
CGCGCGGCGGGCGGAAACGTGGGGGCCCCGCGCCGTCGTGGAGTCGTTTC
CAACCCGACGGTGACGCCGCTGCCCACCCACCCCTGCAACACACCCTCCG
CAAATTTTACCTAAAGGTGCACCCTGATCTTTTCACGCACTATCCGACGC
AAAAGCAGGTGAATCAGGAGTCTTTCAGTCGCTTTCAAGCGTTTCTTGAC
GACGTCCGTGATAAGGACACGGCCCCGCCGCGCGCCGGGTTGCACGCCTA
CCGTTTCTACCTCAAGACGAAAGACGACGGGCTCTTCCAAGAGGTGGCCC
TAGAGCTGAGGACAACAGGAGGGGATTGCCGCAATGTTGTACAGCGCTCG
CTGGAACGGTTCTTCAAGCTTTGCGGGTTGCCCGAGAAGTTTATTTGGGC
GGAGGGGGATTGGAATTATAGCATTGAGGTAATGTCGGAAGACGAGAGAC
AAAAGCAGGAACAGGAAGGGTAAAATAGAAGAAAAATTAATGATATATAA
GGGATGAG
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protein sequence of jgi.p|Nanoce1779_2|601941

>mRNA_8417-protein ID=mRNA_8417-protein|Name=jgi.p|Nanoce1779_2|601941|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MNFLRLGSSSSRSSSTMASRIRPRQPASSASSSASWSRTHLPVLNTLSYK
ISTARSSRGGRKRGGPAPSWSRFQPDGDAAAHPPLQHTLRKFYLKVHPDL
FTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDG
LFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSIEV
MSEDERQKQEQEG*
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mRNA from alignment at scaffold_24:210823..211530+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8417 ID=mRNA_8417|Name=jgi.p|Nanoce1779_2|601941|organism=Nannochloropsis oceanica|type=mRNA|length=708bp|location=Sequence derived from alignment at scaffold_24:210823..211530+ (Nannochloropsis oceanica)
CAGGTAGATCAATCACACGCACTGAACCAGCATGAACTTCCTCCGCCTGG
GCAGCAGCAGCAGTCGCAGCAGCAGCACCATGGCCAGCCGCATCCGCCCT
CGCCAGCCAGCCTCTTCTGCCTCTTCCTCCGCCTCGTGGTCTCGTACCCA
CCTTCCTGTCCTTAATACGCTTAGCTACAAGATATCTACGGCCCGGTCAT
CGCGCGGCGGGCGGAAACGTGGGGGCCCCGCGCCGTCGTGGAGTCGTTTC
CAACCCGACGGTGACGCCGCTGCCCACCCACCCCTGCAACACACCCTCCG
CAAATTTTACCTAAAGGTGCACCCTGATCTTTTCACGCACTATCCGACGC
AAAAGCAGGTGAATCAGGAGTCTTTCAGTCGCTTTCAAGCGTTTCTTGAC
GACGTCCGTGATAAGGACACGGCCCCGCCGCGCGCCGGGTTGCACGCCTA
CCGTTTCTACCTCAAGACGAAAGACGACGGGCTCTTCCAAGAGGTGGCCC
TAGAGCTGAGGACAACAGGAGGGGATTGCCGCAATGTTGTACAGCGCTCG
CTGGAACGGTTCTTCAAGCTTTGCGGGTTGCCCGAGAAGTTTATTTGGGC
GGAGGGGGATTGGAATTATAGCATTGAGGTAATGTCGGAAGACGAGAGAC
AAAAGCAGGAACAGGAAGGGTAAAATAGAAGAAAAATTAATGATATATAA
GGGATGAG
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Coding sequence (CDS) from alignment at scaffold_24:210823..211530+

>mRNA_8417 ID=mRNA_8417|Name=jgi.p|Nanoce1779_2|601941|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_24:210823..211530+ (Nannochloropsis oceanica)
ATGAACTTCCTCCGCCTGGGCAGCAGCAGCAGTCGCAGCAGCAGCACCAT
GGCCAGCCGCATCCGCCCTCGCCAGCCAGCCTCTTCTGCCTCTTCCTCCG
CCTCGTGGTCTCGTACCCACCTTCCTGTCCTTAATACGCTTAGCTACAAG
ATATCTACGGCCCGGTCATCGCGCGGCGGGCGGAAACGTGGGGGCCCCGC
GCCGTCGTGGAGTCGTTTCCAACCCGACGGTGACGCCGCTGCCCACCCAC
CCCTGCAACACACCCTCCGCAAATTTTACCTAAAGGTGCACCCTGATCTT
TTCACGCACTATCCGACGCAAAAGCAGGTGAATCAGGAGTCTTTCAGTCG
CTTTCAAGCGTTTCTTGACGACGTCCGTGATAAGGACACGGCCCCGCCGC
GCGCCGGGTTGCACGCCTACCGTTTCTACCTCAAGACGAAAGACGACGGG
CTCTTCCAAGAGGTGGCCCTAGAGCTGAGGACAACAGGAGGGGATTGCCG
CAATGTTGTACAGCGCTCGCTGGAACGGTTCTTCAAGCTTTGCGGGTTGC
CCGAGAAGTTTATTTGGGCGGAGGGGGATTGGAATTATAGCATTGAGGTA
ATGTCGGAAGACGAGAGACAAAAGCAGGAACAGGAAGGGTAA
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Synonyms
Publications