jgi.p|Nanoce1779_2|195386, mRNA_8415 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|195386
Unique Name	mRNA_8415
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1537
Alignment location	scaffold_24:208158..209694 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	195472
Track	FilteredModels2
ProteinId	195386

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:208158..209694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|195386	gene_8415	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|195386	mRNA_8415-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8415	CDS_8415	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:208158..209694+
coding sequence from alignment at scaffold_24:208158..209694+

mRNA sequence

>mRNA_8415 ID=mRNA_8415|Name=jgi.p|Nanoce1779_2|195386|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp
CTCAAGTGGACTCCCTTACTAGCCTCCTGCACTGGGTCTGGAGCAGCACC
AACGCCTTCGCCGCACGTCTTGAATCTCTCCTCATGCTGCAAGAAGGGCC
TTTTCACACCATTGCTTCTGTCTGTCAGGAGCTGCGGCAGACCCAGGTCG
ACCCCGAGTTAGTCGCCGGGGAGCACGGCCACACGCTTTTTGATTTCATT
GATGATGCCTCACTATCCTCCTTGAGAACGCAAGCAGAGGGAGACTTGAA
AGAAATGTGGGTTTGGCACGAGAGGGGAGTGAGGACGCAGACCGGGATGG
AGGAGCGCGTGTTGTACCTGCAGCAGGCTCTTAGCACGACTAGGGAAGAG
GCGGGGCTTACGGAAGAGAAAGCCGAGGAAGAGAAGGAGGAAGGGAAAAG
GGGAGAAAAGAGGTTTGAAAACACGTGGTTGTGCCATGTGATGGAAGGCA
ACGTGGCTGAGCAAGCAGCCATAATCGAGAGAATGAAAGCTAGCCTCCTC
GAGGCAGCAAGCGCCTACTACCGTCTCTCTCGCACCTCGCACCAGCAGCA
GCCACTAAACTCGCCCTCCCCCCCCTCGACTCTCTCCTCCCCTCCTCTCC
GCTCTCCGGCCACCGACGAGAGAGAACTCCTCCGCCTTCTCCAGTCCGGG
ATCGACCGAATGAAAGCTCTGCATCTTCAGATGGAACATCAGCTGCCCTC
CATCCTTCACGCCCTCCGCCAGTCCCTCGTCCAACTCGCAAACGACGATC
TCCTCACCATCATGCAAGAAGCTCAGACGTCGGTGGGAGGGCTCAAGGAA
GGGCAGGTGCGTTTCGGGGTGCTAGGGGAGGAGGTCCAGGGCGCCGTTGG
GGAAATAGCGAGCCTGGCGTCGTTCTACTCCCAGTTTTTGAAGGCCTACG
GGAGACTGAGGCCGGAGGTCGCCCGGCGCCGGAGAGGGTTAAGCGAAATG
GAGCAAGTGGTGGAAGGGATGGAAGAGAGATTGAGACGCAGGCAGGAGGA
GGAGGAGAGGGAGAGAGCGAGGTTTTGGGAGGAGTGTGGAAGGTTCTTGC
CCCAGTCCCTGTGTCCGCTGATCCAGGAGCCCGCTGAGACATTCACTGTC
GTCCCGAGGGTCAAAGACTTGCTAGGAAGGATGCCCATGCTGGGGGAGGA
GATCGGGAGGGAGGCGGGAAAGGACGGGAGGGAAGAAAGCGGAGGGGGAC
GTTGAAAGAAAAAAGGAAATAGTGAGTGGAGGAAGTCAAGTGAGGGATTT
AAATACAGGTTTTAAAGAAAGAGAAATCGTAATGGGAAAAACACGCGCAG
TCAATATCGTATTTTGGAATCGATAAAGGCAGGAGATTGCGGGACAGTCC
CTTTGACGGCGAATATACAGTCTTTAAATCGCTTCGGGTCGAAAATAAGG
TGTTCCTTTTTCTTTCCCTTCCGTAATCTTTCCGTTCAAAATTTTCATTC
CTTTCTCCTCCTCTCTTTCCCTCCTCCTATCATCTTCCCGCTCTCCCCCA
ATCCCTCTTACGTACACCTTCTGCTTCAAACCATTTC

protein sequence of jgi.p|Nanoce1779_2|195386

>mRNA_8415-protein ID=mRNA_8415-protein|Name=jgi.p|Nanoce1779_2|195386|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MLQEGPFHTIASVCQELRQTQVDPELVAGEHGHTLFDFIDDASLSSLRTQ
AEGDLKEMWVWHERGVRTQTGMEERVLYLQQALSTTREEAGLTEEKAEEE
KEEGKRGEKRFENTWLCHVMEGNVAEQAAIIERMKASLLEAASAYYRLSR
TSHQQQPLNSPSPPSTLSSPPLRSPATDERELLRLLQSGIDRMKALHLQM
EHQLPSILHALRQSLVQLANDDLLTIMQEAQTSVGGLKEGQVRFGVLGEE
VQGAVGEIASLASFYSQFLKAYGRLRPEVARRRRGLSEMEQVVEGMEERL
RRRQEEEERERARFWEECGRFLPQSLCPLIQEPAETFTVVPRVKDLLGRM
PMLGEEIGREAGKDGREESGGGR*

mRNA from alignment at scaffold_24:208158..209694+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8415 ID=mRNA_8415|Name=jgi.p|Nanoce1779_2|195386|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp|location=Sequence derived from alignment at scaffold_24:208158..209694+ (Nannochloropsis oceanica)
CTCAAGTGGACTCCCTTACTAGCCTCCTGCACTGGGTCTGGAGCAGCACC
AACGCCTTCGCCGCACGTCTTGAATCTCTCCTCATGCTGCAAGAAGGGCC
TTTTCACACCATTGCTTCTGTCTGTCAGGAGCTGCGGCAGACCCAGGTCG
ACCCCGAGTTAGTCGCCGGGGAGCACGGCCACACGCTTTTTGATTTCATT
GATGATGCCTCACTATCCTCCTTGAGAACGCAAGCAGAGGGAGACTTGAA
AGAAATGTGGGTTTGGCACGAGAGGGGAGTGAGGACGCAGACCGGGATGG
AGGAGCGCGTGTTGTACCTGCAGCAGGCTCTTAGCACGACTAGGGAAGAG
GCGGGGCTTACGGAAGAGAAAGCCGAGGAAGAGAAGGAGGAAGGGAAAAG
GGGAGAAAAGAGGTTTGAAAACACGTGGTTGTGCCATGTGATGGAAGGCA
ACGTGGCTGAGCAAGCAGCCATAATCGAGAGAATGAAAGCTAGCCTCCTC
GAGGCAGCAAGCGCCTACTACCGTCTCTCTCGCACCTCGCACCAGCAGCA
GCCACTAAACTCGCCCTCCCCCCCCTCGACTCTCTCCTCCCCTCCTCTCC
GCTCTCCGGCCACCGACGAGAGAGAACTCCTCCGCCTTCTCCAGTCCGGG
ATCGACCGAATGAAAGCTCTGCATCTTCAGATGGAACATCAGCTGCCCTC
CATCCTTCACGCCCTCCGCCAGTCCCTCGTCCAACTCGCAAACGACGATC
TCCTCACCATCATGCAAGAAGCTCAGACGTCGGTGGGAGGGCTCAAGGAA
GGGCAGGTGCGTTTCGGGGTGCTAGGGGAGGAGGTCCAGGGCGCCGTTGG
GGAAATAGCGAGCCTGGCGTCGTTCTACTCCCAGTTTTTGAAGGCCTACG
GGAGACTGAGGCCGGAGGTCGCCCGGCGCCGGAGAGGGTTAAGCGAAATG
GAGCAAGTGGTGGAAGGGATGGAAGAGAGATTGAGACGCAGGCAGGAGGA
GGAGGAGAGGGAGAGAGCGAGGTTTTGGGAGGAGTGTGGAAGGTTCTTGC
CCCAGTCCCTGTGTCCGCTGATCCAGGAGCCCGCTGAGACATTCACTGTC
GTCCCGAGGGTCAAAGACTTGCTAGGAAGGATGCCCATGCTGGGGGAGGA
GATCGGGAGGGAGGCGGGAAAGGACGGGAGGGAAGAAAGCGGAGGGGGAC
GTTGAAAGAAAAAAGGAAATAGTGAGTGGAGGAAGTCAAGTGAGGGATTT
AAATACAGGTTTTAAAGAAAGAGAAATCGTAATGGGAAAAACACGCGCAG
TCAATATCGTATTTTGGAATCGATAAAGGCAGGAGATTGCGGGACAGTCC
CTTTGACGGCGAATATACAGTCTTTAAATCGCTTCGGGTCGAAAATAAGG
TGTTCCTTTTTCTTTCCCTTCCGTAATCTTTCCGTTCAAAATTTTCATTC
CTTTCTCCTCCTCTCTTTCCCTCCTCCTATCATCTTCCCGCTCTCCCCCA
ATCCCTCTTACGTACACCTTCTGCTTCAAACCATTTC

Coding sequence (CDS) from alignment at scaffold_24:208158..209694+

>mRNA_8415 ID=mRNA_8415|Name=jgi.p|Nanoce1779_2|195386|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_24:208158..209694+ (Nannochloropsis oceanica)
ATGCTGCAAGAAGGGCCTTTTCACACCATTGCTTCTGTCTGTCAGGAGCT
GCGGCAGACCCAGGTCGACCCCGAGTTAGTCGCCGGGGAGCACGGCCACA
CGCTTTTTGATTTCATTGATGATGCCTCACTATCCTCCTTGAGAACGCAA
GCAGAGGGAGACTTGAAAGAAATGTGGGTTTGGCACGAGAGGGGAGTGAG
GACGCAGACCGGGATGGAGGAGCGCGTGTTGTACCTGCAGCAGGCTCTTA
GCACGACTAGGGAAGAGGCGGGGCTTACGGAAGAGAAAGCCGAGGAAGAG
AAGGAGGAAGGGAAAAGGGGAGAAAAGAGGTTTGAAAACACGTGGTTGTG
CCATGTGATGGAAGGCAACGTGGCTGAGCAAGCAGCCATAATCGAGAGAA
TGAAAGCTAGCCTCCTCGAGGCAGCAAGCGCCTACTACCGTCTCTCTCGC
ACCTCGCACCAGCAGCAGCCACTAAACTCGCCCTCCCCCCCCTCGACTCT
CTCCTCCCCTCCTCTCCGCTCTCCGGCCACCGACGAGAGAGAACTCCTCC
GCCTTCTCCAGTCCGGGATCGACCGAATGAAAGCTCTGCATCTTCAGATG
GAACATCAGCTGCCCTCCATCCTTCACGCCCTCCGCCAGTCCCTCGTCCA
ACTCGCAAACGACGATCTCCTCACCATCATGCAAGAAGCTCAGACGTCGG
TGGGAGGGCTCAAGGAAGGGCAGGTGCGTTTCGGGGTGCTAGGGGAGGAG
GTCCAGGGCGCCGTTGGGGAAATAGCGAGCCTGGCGTCGTTCTACTCCCA
GTTTTTGAAGGCCTACGGGAGACTGAGGCCGGAGGTCGCCCGGCGCCGGA
GAGGGTTAAGCGAAATGGAGCAAGTGGTGGAAGGGATGGAAGAGAGATTG
AGACGCAGGCAGGAGGAGGAGGAGAGGGAGAGAGCGAGGTTTTGGGAGGA
GTGTGGAAGGTTCTTGCCCCAGTCCCTGTGTCCGCTGATCCAGGAGCCCG
CTGAGACATTCACTGTCGTCCCGAGGGTCAAAGACTTGCTAGGAAGGATG
CCCATGCTGGGGGAGGAGATCGGGAGGGAGGCGGGAAAGGACGGGAGGGA
AGAAAGCGGAGGGGGACGTTGA

Synonyms

Publications