jgi.p|Nanoce1779_2|195460, mRNA_8414 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|195460
Unique NamemRNA_8414
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length628
Alignment locationscaffold_24:207195..208151 +

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Properties
Property NameValue
TranscriptId195546
TrackFilteredModels2
ProteinId195460
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:207195..208151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195460gene_8414Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195460mRNA_8414-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8414CDS_8414Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8414 ID=mRNA_8414|Name=jgi.p|Nanoce1779_2|195460|organism=Nannochloropsis oceanica|type=mRNA|length=628bp
ACCGAGGCATGTAGCTCCTCGATCTCGGGAGGCAAGGGCGACTTGACGAT
TGGGGGCGACTGCGCCCCCGAAACTACCGACGACATGAATGAAGAAAGGG
GGTGGAAAAGATGCCTGTGGTGTTATGTGTTATGCGAGTCGTGGGACTGG
TGGTTGGAACGCGAGGAGAGATGCGAGTCGCTCCGGGCTGCTCCGACGCC
GCTTCATGTCCCTCTGCGCTGTTCCTAAAGTACTAAATTTATTTGTCGTA
CCAACACACGACTCCCGCAGGAGGCGCATCTCCCAGTACACTTTGTCGAC
ACGCCTGCTTTCTCGTAGCCGGAGGAGCAGTCAGTGCGCTCTCCATCCGG
CCGCGTGCGCTTCCATCATTGTCATCATCGCCCACATTGGCGCGTACCAC
CCTATGGGCAGGCCCAGGCCCACGCCCTTGTCCTCTTCTCTAGGCCGCGA
GACTGACGCCACAGGGGCAGTAGTGGCAGCAGCAGTAGCCTTATCCAGCA
CCTCTTGTCCTTGCTGCATGACGGCGACAGGTGCCTAGCCGAGGCCCGTT
TGTCCCTCCAGCGGTCTCACAAGCTCCTGGACATATTTAGACAGGAAGGC
CAGCGTCTCTTTCACGCCCTCTCTCTCC
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protein sequence of jgi.p|Nanoce1779_2|195460

>mRNA_8414-protein ID=mRNA_8414-protein|Name=jgi.p|Nanoce1779_2|195460|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MKKGGGKDACGVMCYASRGTGGWNARRDASRSGLLRRRFMSLCAVPKVLN
LFVVPTHDSRRRRISQYTLSTRLLSRSRRSSQCALHPAACASIIVIIAHI
GAYHPMGRPRPTPLSSSLGRETDATGAVVAAAVALSSTSCPCCMTATGA*
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mRNA from alignment at scaffold_24:207195..208151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8414 ID=mRNA_8414|Name=jgi.p|Nanoce1779_2|195460|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at scaffold_24:207195..208151+ (Nannochloropsis oceanica)
ACCGAGGCATGTAGCTCCTCGATCTCGGGAGGCAAGGGCGACTTGACGAT
TGGGGGCGACTGCGCCCCCGAAACTACCGACGACATGAATGAAGAAAGGG
GGTGGAAAAGATGCCTGTGGTGTTATGTGTTATGCGAGTCGTGGGACTGG
TGGTTGGAACGCGAGGAGAGATGCGAGTCGCTCCGGGCTGCTCCGACGCC
GCTTCATGTCCCTCTGCGCTGTTCCTAAAGTACTAAATTTATTTGTCGTA
CCAACACACGACTCCCGCAGGAGGCGCATCTCCCAGTACACTTTGTCGAC
ACGCCTGCTTTCTCGTAGCCGGAGGAGCAGTCAGTGCGCTCTCCATCCGG
CCGCGTGCGCTTCCATCATTGTCATCATCGCCCACATTGGCGCGTACCAC
CCTATGGGCAGGCCCAGGCCCACGCCCTTGTCCTCTTCTCTAGGCCGCGA
GACTGACGCCACAGGGGCAGTAGTGGCAGCAGCAGTAGCCTTATCCGTAA
GTTGGACCAACCCCTTCCGACCACCACGCTTCGACTGTGGACTCTCCCTC
TCATACCCACACGCACAACGCGGCTATGGCGAACCACCCGTCGGCAGAGC
ACCTCTTGTCCTTGCTGCATGACGGCGACAGGTGCCTAGCCGAGGCCCGT
TTGTCCCTCCAGCGGTCTCACAAGCTCCTGGACATATTTAGACAGGAAGG
TGGGTGTGTCTTCTATTTTATGTTCATTAACGAAGAAAGGAAGCTGGAGA
AAAGGGGTGGGTTGGAGGGGATAGGTCTATGTTTTGCAAGGGAATGGAAA
GTGAGACAGAGGACCGGGGGAGCCAGCTTCAAGGGCCAGAGCAGCGCACT
GGCAGAAAATTTCATGTCTATTGTACCCTGATTTCCCCCTTCTCGCCCCC
TGCTCCCTTCGCCCTTATCCTATATAGGCCAGCGTCTCTTTCACGCCCTC
TCTCTCC
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Coding sequence (CDS) from alignment at scaffold_24:207195..208151+

>mRNA_8414 ID=mRNA_8414|Name=jgi.p|Nanoce1779_2|195460|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_24:207195..208151+ (Nannochloropsis oceanica)
ATGAAGAAAGGGGGTGGAAAAGATGCCTGTGGTGTTATGTGTTATGCGAG
TCGTGGGACTGGTGGTTGGAACGCGAGGAGAGATGCGAGTCGCTCCGGGC
TGCTCCGACGCCGCTTCATGTCCCTCTGCGCTGTTCCTAAAGTACTAAAT
TTATTTGTCGTACCAACACACGACTCCCGCAGGAGGCGCATCTCCCAGTA
CACTTTGTCGACACGCCTGCTTTCTCGTAGCCGGAGGAGCAGTCAGTGCG
CTCTCCATCCGGCCGCGTGCGCTTCCATCATTGTCATCATCGCCCACATT
GGCGCGTACCACCCTATGGGCAGGCCCAGGCCCACGCCCTTGTCCTCTTC
TCTAGGCCGCGAGACTGACGCCACAGGGGCAGTAGTGGCAGCAGCAGTAG
CCTTATCCAGCACCTCTTGTCCTTGCTGCATGACGGCGACAGGTGCCTAG
ATGAAGAAAGGGGGTGGAAAAGATGCCTGTGGTGTTATGTGTTATGCGAG
TCGTGGGACTGGTGGTTGGAACGCGAGGAGAGATGCGAGTCGCTCCGGGC
TGCTCCGACGCCGCTTCATGTCCCTCTGCGCTGTTCCTAAAGTACTAAAT
TTATTTGTCGTACCAACACACGACTCCCGCAGGAGGCGCATCTCCCAGTA
CACTTTGTCGACACGCCTGCTTTCTCGTAGCCGGAGGAGCAGTCAGTGCG
CTCTCCATCCGGCCGCGTGCGCTTCCATCATTGTCATCATCGCCCACATT
GGCGCGTACCACCCTATGGGCAGGCCCAGGCCCACGCCCTTGTCCTCTTC
TCTAGGCCGCGAGACTGACGCCACAGGGGCAGTAGTGGCAGCAGCAGTAG
CCTTATCCAGCACCTCTTGTCCTTGCTGCATGACGGCGACAGGTGCCTAG
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Synonyms
Publications