jgi.p|Nanoce1779_2|601932, mRNA_8413 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601932
Unique NamemRNA_8413
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length929
Alignment locationscaffold_24:205868..207196 -

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Properties
Property NameValue
TranscriptId602018
TrackFilteredModels2
ProteinId601932
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:205868..207196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601932gene_8413Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601932mRNA_8413-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8413CDS_8413Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8413 ID=mRNA_8413|Name=jgi.p|Nanoce1779_2|601932|organism=Nannochloropsis oceanica|type=mRNA|length=929bp
GTGGTCGCCGCAGGACAAGAGACCTACACGGACCCTGCAACTGGCTATAT
GGTCATGAGTGCCCTCTACCACACGCGGCGTGGCTACTGCTGCGGAAACG
TGTGTCGGCACTGCCCATATAATTCTATGAATGTGGGCAAGAAGAAGGTG
GACTGGGTAATGGCGGATGGGACCAAGTACACGGCCAAGAAAGCTGCCGC
CTTGACACAGTTGGCCAAACGTGCAAACTCAAGGGGGGGGTCCCCAGAAA
GGAAAAGGGGCGAGGATAAAGACGACAACAACTATGGATGTGCGGGAAGC
AGTAGTGGTAGCAGCCATGATGGTAAAAGCAGCGGCAACAGCAGCGACAG
CTGCAGCAGCTGCTGCAGCAGCAACGGGAGCAGCACTGTGGCGGCGGAGG
CCACCAAGGGGCTCGTCACCGAGACCACGATAAATTGCGGTGGCACGCAG
ATGGCGGGCTCAATTCTACCAGGGACTGGCCCACTGCCGGGGACGAGTGG
GGGGTGCGTGCTAGCAACCACGTTGATATTGCGGCCCGCGGCTCTCTTCC
ACGTTGGTAGGGTTTGCACCCCTGCGAACGATGCAGCTGGAGCGTCAACA
TTTTTGCAAAGAAAAACGTGGTGGGCAGGGGCCGTCAGCGGCAGGCATTC
CTGGGGTAGGGCGATACGGCAGGTGCTTGGGTCGTATCGGTCGGCTCGGG
TTGGGGGCTTAGCGATGGCCTTTACGCTGCTGCGAGGACCACGCACGACA
GTGAGCATGATAGACATACACAGTGAGACATGAATGTAATTGTATGGAAC
CCACAGTGAAGATTCTCTTCCGATACAAGTAAGGGAAACGACGAAAGAAG
AAAGAAAAAGCAGCAGCGGTTGGCGCATCCTCTGGCGAGAGAAATGGAAA
GTTCCATAACGCGAGGTCTTCGACGCGTG
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protein sequence of jgi.p|Nanoce1779_2|601932

>mRNA_8413-protein ID=mRNA_8413-protein|Name=jgi.p|Nanoce1779_2|601932|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MVMSALYHTRRGYCCGNVCRHCPYNSMNVGKKKVDWVMADGTKYTAKKAA
ALTQLAKRANSRGGSPERKRGEDKDDNNYGCAGSSSGSSHDGKSSGNSSD
SCSSCCSSNGSSTVAAEATKGLVTETTINCGGTQMAGSILPGTGPLPGTS
GGCVLATTLILRPAALFHVGRVCTPANDAAGASTFLQRKTWWAGAVSGRH
SWGRAIRQVLGSYRSARVGGLAMAFTLLRGPRTTVSMIDIHSET*
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mRNA from alignment at scaffold_24:205868..207196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8413 ID=mRNA_8413|Name=jgi.p|Nanoce1779_2|601932|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_24:205868..207196- (Nannochloropsis oceanica)
GTGGTCGCCGCAGGACAAGAGACCTACACGGACCCTGCAACTGGCTATAT
GGTCATGAGTGCCCTCTACCACACGTATGTTACAAATCAGAATGAAAGAA
AAGTGAAAGGCGCAATGCTTGTTGGTCTTTTCGGCTTATTTTTGGACTCA
CTTTTCCCTTCCTCCTCCCGAACCCACGCCACGCACGCACCATAACTACT
ACTACTTCACCTCTACGACCTAGGCGGCGTGGCTACTGCTGCGGAAACGT
GTGTCGGCACTGCCCATATAATTCTATGAATGTGGGCAAGAAGAAGGTGG
ACTGGGTAATGGCGGATGGGACCAAGTACACGGCCAAGAAAGCTGCCGCC
TTGACACAGTTGGCCAAACGTGCAAACTCAAGGGGGGGGTCCCCAGAAAG
GAAAAGGGGCGAGGATAAAGACGACAACAACTATGGATGTGCGGGAAGCA
GTAGTGGTAGCAGCCATGATGGTAAAAGCAGCGGCAACAGCAGCGACAGC
TGCAGCAGCTGCTGCAGCAGCAACGGGAGCAGCACTGTGGCGGCGGAGGC
CACCAAGGGGCTCGTCACCGAGACCACGATAAATTGCGGTGGCACGCAGA
TGGCGGGCTCAATTCTACCAGGTGAGCAGCAGGGGGGTCCTCAAGAGGGA
ATGAAAGCGACTTTGATTGATCAACTCTTTTTCATTCTTTTTTTGGGAAG
GGACTGGCCCACTGCCGGGGACGAGTGGGGGGTGCGTGCTAGCAACCACG
TTGATATTGCGGCCCGCGGCTCTCTTCCACGTTGGTAGGGTTTGCACCCC
TGCGAACGATGCAGCTGGAGCGTCAACATTTTTGCAAAGAAAAACGTGGT
GGGCAGGGGCCGTCAGCGGCAGGCATTCCTGGGGTAGGGCGATACGGCAG
GTGCTTGGGTCGTATCGGTACGCATGGAAGGAAGGGGGCGGCTGGATTTT
TTTGATTTTTGACCTCCAACGAGGCCATGATTTAATTTGTTGGCATCCTT
CCAAGAAGTATCTTGAAGAAGCAGGAAATGACCCATACAATGTTTGCTAC
TATCTATCTTTTCCTCGCATCCTCCTCTTGACAACACAGGTCGGCTCGGG
TTGGGGGCTTAGCGATGGCCTTTACGCTGCTGCGAGGACCACGCACGACA
GTGAGCATGATAGACATACACAGTGAGACATGAATGTAATTGTATGGAAC
CCACAGTGAAGATTCTCTTCCGATACAAGTAAGGGAAACGACGAAAGAAG
AAAGAAAAAGCAGCAGCGGTTGGCGCATCCTCTGGCGAGAGAAATGGAAA
GTTCCATAACGCGAGGTCTTCGACGCGTG
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Coding sequence (CDS) from alignment at scaffold_24:205868..207196-

>mRNA_8413 ID=mRNA_8413|Name=jgi.p|Nanoce1779_2|601932|organism=Nannochloropsis oceanica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_24:205868..207196- (Nannochloropsis oceanica)
GTCGGCTCGGGTTGGGGGCTTAGCGATGGCCTTTACGCTGCTGCGAGGAC
CACGCACGACAGTGAGCATGATAGACATACACAGTGAGACATGAGGACTG
GCCCACTGCCGGGGACGAGTGGGGGGTGCGTGCTAGCAACCACGTTGATA
TTGCGGCCCGCGGCTCTCTTCCACGTTGGTAGGGTTTGCACCCCTGCGAA
CGATGCAGCTGGAGCGTCAACATTTTTGCAAAGAAAAACGTGGTGGGCAG
GGGCCGTCAGCGGCAGGCATTCCTGGGGTAGGGCGATACGGCAGGTGCTT
GGGTCGTATCGGCGGCGTGGCTACTGCTGCGGAAACGTGTGTCGGCACTG
CCCATATAATTCTATGAATGTGGGCAAGAAGAAGGTGGACTGGGTAATGG
CGGATGGGACCAAGTACACGGCCAAGAAAGCTGCCGCCTTGACACAGTTG
GCCAAACGTGCAAACTCAAGGGGGGGGTCCCCAGAAAGGAAAAGGGGCGA
GGATAAAGACGACAACAACTATGGATGTGCGGGAAGCAGTAGTGGTAGCA
GCCATGATGGTAAAAGCAGCGGCAACAGCAGCGACAGCTGCAGCAGCTGC
TGCAGCAGCAACGGGAGCAGCACTGTGGCGGCGGAGGCCACCAAGGGGCT
CGTCACCGAGACCACGATAAATTGCGGTGGCACGCAGATGGCGGGCTCAA
TTCTACCAGATGGTCATGAGTGCCCTCTACCACACGTCGGCTCGGGTTGG
GGGCTTAGCGATGGCCTTTACGCTGCTGCGAGGACCACGCACGACAGTGA
GCATGATAGACATACACAGTGAGACATGAGGACTGGCCCACTGCCGGGGA
CGAGTGGGGGGTGCGTGCTAGCAACCACGTTGATATTGCGGCCCGCGGCT
CTCTTCCACGTTGGTAGGGTTTGCACCCCTGCGAACGATGCAGCTGGAGC
GTCAACATTTTTGCAAAGAAAAACGTGGTGGGCAGGGGCCGTCAGCGGCA
GGCATTCCTGGGGTAGGGCGATACGGCAGGTGCTTGGGTCGTATCGGCGG
CGTGGCTACTGCTGCGGAAACGTGTGTCGGCACTGCCCATATAATTCTAT
GAATGTGGGCAAGAAGAAGGTGGACTGGGTAATGGCGGATGGGACCAAGT
ACACGGCCAAGAAAGCTGCCGCCTTGACACAGTTGGCCAAACGTGCAAAC
TCAAGGGGGGGGTCCCCAGAAAGGAAAAGGGGCGAGGATAAAGACGACAA
CAACTATGGATGTGCGGGAAGCAGTAGTGGTAGCAGCCATGATGGTAAAA
GCAGCGGCAACAGCAGCGACAGCTGCAGCAGCTGCTGCAGCAGCAACGGG
AGCAGCACTGTGGCGGCGGAGGCCACCAAGGGGCTCGTCACCGAGACCAC
GATAAATTGCGGTGGCACGCAGATGGCGGGCTCAATTCTACCAGATGGTC
ATGAGTGCCCTCTACCACACGTCGGCTCGGGTTGGGGGCTTAGCGATGGC
CTTTACGCTGCTGCGAGGACCACGCACGACAGTGAGCATGATAGACATAC
ACAGTGAGACATGAGGACTGGCCCACTGCCGGGGACGAGTGGGGGGTGCG
TGCTAGCAACCACGTTGATATTGCGGCCCGCGGCTCTCTTCCACGTTGGT
AGGGTTTGCACCCCTGCGAACGATGCAGCTGGAGCGTCAACATTTTTGCA
AAGAAAAACGTGGTGGGCAGGGGCCGTCAGCGGCAGGCATTCCTGGGGTA
GGGCGATACGGCAGGTGCTTGGGTCGTATCGGCGGCGTGGCTACTGCTGC
GGAAACGTGTGTCGGCACTGCCCATATAATTCTATGAATGTGGGCAAGAA
GAAGGTGGACTGGGTAATGGCGGATGGGACCAAGTACACGGCCAAGAAAG
CTGCCGCCTTGACACAGTTGGCCAAACGTGCAAACTCAAGGGGGGGGTCC
CCAGAAAGGAAAAGGGGCGAGGATAAAGACGACAACAACTATGGATGTGC
GGGAAGCAGTAGTGGTAGCAGCCATGATGGTAAAAGCAGCGGCAACAGCA
GCGACAGCTGCAGCAGCTGCTGCAGCAGCAACGGGAGCAGCACTGTGGCG
GCGGAGGCCACCAAGGGGCTCGTCACCGAGACCACGATAAATTGCGGTGG
CACGCAGATGGCGGGCTCAATTCTACCAGATGGTCATGAGTGCCCTCTAC
CACACGTCGGCTCGGGTTGGGGGCTTAGCGATGGCCTTTACGCTGCTGCG
AGGACCACGCACGACAGTGAGCATGATAGACATACACAGTGAGACATGAG
GACTGGCCCACTGCCGGGGACGAGTGGGGGGTGCGTGCTAGCAACCACGT
TGATATTGCGGCCCGCGGCTCTCTTCCACGTTGGTAGGGTTTGCACCCCT
GCGAACGATGCAGCTGGAGCGTCAACATTTTTGCAAAGAAAAACGTGGTG
GGCAGGGGCCGTCAGCGGCAGGCATTCCTGGGGTAGGGCGATACGGCAGG
TGCTTGGGTCGTATCGGCGGCGTGGCTACTGCTGCGGAAACGTGTGTCGG
CACTGCCCATATAATTCTATGAATGTGGGCAAGAAGAAGGTGGACTGGGT
AATGGCGGATGGGACCAAGTACACGGCCAAGAAAGCTGCCGCCTTGACAC
AGTTGGCCAAACGTGCAAACTCAAGGGGGGGGTCCCCAGAAAGGAAAAGG
GGCGAGGATAAAGACGACAACAACTATGGATGTGCGGGAAGCAGTAGTGG
TAGCAGCCATGATGGTAAAAGCAGCGGCAACAGCAGCGACAGCTGCAGCA
GCTGCTGCAGCAGCAACGGGAGCAGCACTGTGGCGGCGGAGGCCACCAAG
GGGCTCGTCACCGAGACCACGATAAATTGCGGTGGCACGCAGATGGCGGG
CTCAATTCTACCAGATGGTCATGAGTGCCCTCTACCACAC
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Synonyms
Publications