jgi.p|Nanoce1779_2|601927, mRNA_8411 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601927
Unique Name	mRNA_8411
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	965
Alignment location	scaffold_24:201272..202236 -

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Properties


Property Name	Value
TranscriptId	602013
Track	FilteredModels2
ProteinId	601927

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:201272..202236 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601927	gene_8411	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601927	mRNA_8411-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8411	CDS_8411	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:201272..202236-
coding sequence from alignment at scaffold_24:201272..202236-

mRNA sequence

>mRNA_8411 ID=mRNA_8411|Name=jgi.p|Nanoce1779_2|601927|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
CTACTGACAAGGAGACGGTCGAGGTACGTTTGAGATAAAAGACGAAGGAG
GAGGGTTGGAGAGAGGAAGGGGTTGGTCTGATACCATGGTGTGCGTCGGT
TTCAGGATGCGGTGCATCTATTCGCACTCTCTACCTTCATGTACTCATCC
ATGTTCTCCCGACTTCTCCTTTTTCCTCCCTCCCACTCTCCCCGACCAAC
AGAACAAGATCAAGGAAACCACCGAGTGGCTGGACGTGCATCAGTCGGCC
GAGAAGGAGGAGTTCGAGGCCAAGCAGAAGGAGCTCGAGGCTGTGGTCCT
CCCCATTCTTCAGTCCCTCTCCGGAGGCGCCGGGGGTATGCCTGGAGGCA
TGCCCGGCGGTATGCCTGACATGGGTGCGAGCGGTGCGGGCGCTGGCCCG
GCCCCGACTGCCGATGAGGGCCCCAAGATCGAGGAGATCGATTAAACAGC
TCAATTGGAGAGTAGACGGTAGCAGAGGAAAGCTTTTCCGTGGTTGTTCA
TTTGATGGATCGACGAGTGAGCGAATTTTCTGCAAGTGAGCGTGCGCTGT
TTTTTCTTCTATACGATGTGAGTTTGAGAATTTATTTTGGGGGGCAAATG
GAGAGGGAAGGTTAGGGTAAAGATAACTTCAGAGATTTTTGTTTGGACAA
ACGAGAGCAAAAAAAGTCTTGGTACAATTGCCAGGAAACTTCACAGACAA
GATGGGATGCGGGCCTCGGTACTGTCATCTCAATTACCTTTCCGTGGGAG
GAGGGATGGAAAGATGAGAGGCAAGCGCTCAGCTAGCTCTGAAAGATCTA
GTTATTGTGGGTCCGTCTTTTTATTAAGACAAGTGTATCACAGCAGTCCA
GGTATCGTTAGAACCAAGACGATTCGCACTAAGGTTTTAATTATCACACA
TTTGCTTTGTCTTGCTTCGTTCTCCTCCTTCATGTCGCGACGACTTATAC
TCTTATCGACCTCCC

protein sequence of jgi.p|Nanoce1779_2|601927

>mRNA_8411-protein ID=mRNA_8411-protein|Name=jgi.p|Nanoce1779_2|601927|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MVCVGFRMRCIYSHSLPSCTHPCSPDFSFFLPPTLPDQQNKIKETTEWLD
VHQSAEKEEFEAKQKELEAVVLPILQSLSGGAGGMPGGMPGGMPDMGASG
AGAGPAPTADEGPKIEEID*

mRNA from alignment at scaffold_24:201272..202236-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8411 ID=mRNA_8411|Name=jgi.p|Nanoce1779_2|601927|organism=Nannochloropsis oceanica|type=mRNA|length=965bp|location=Sequence derived from alignment at scaffold_24:201272..202236- (Nannochloropsis oceanica)
CTACTGACAAGGAGACGGTCGAGGTACGTTTGAGATAAAAGACGAAGGAG
GAGGGTTGGAGAGAGGAAGGGGTTGGTCTGATACCATGGTGTGCGTCGGT
TTCAGGATGCGGTGCATCTATTCGCACTCTCTACCTTCATGTACTCATCC
ATGTTCTCCCGACTTCTCCTTTTTCCTCCCTCCCACTCTCCCCGACCAAC
AGAACAAGATCAAGGAAACCACCGAGTGGCTGGACGTGCATCAGTCGGCC
GAGAAGGAGGAGTTCGAGGCCAAGCAGAAGGAGCTCGAGGCTGTGGTCCT
CCCCATTCTTCAGTCCCTCTCCGGAGGCGCCGGGGGTATGCCTGGAGGCA
TGCCCGGCGGTATGCCTGACATGGGTGCGAGCGGTGCGGGCGCTGGCCCG
GCCCCGACTGCCGATGAGGGCCCCAAGATCGAGGAGATCGATTAAACAGC
TCAATTGGAGAGTAGACGGTAGCAGAGGAAAGCTTTTCCGTGGTTGTTCA
TTTGATGGATCGACGAGTGAGCGAATTTTCTGCAAGTGAGCGTGCGCTGT
TTTTTCTTCTATACGATGTGAGTTTGAGAATTTATTTTGGGGGGCAAATG
GAGAGGGAAGGTTAGGGTAAAGATAACTTCAGAGATTTTTGTTTGGACAA
ACGAGAGCAAAAAAAGTCTTGGTACAATTGCCAGGAAACTTCACAGACAA
GATGGGATGCGGGCCTCGGTACTGTCATCTCAATTACCTTTCCGTGGGAG
GAGGGATGGAAAGATGAGAGGCAAGCGCTCAGCTAGCTCTGAAAGATCTA
GTTATTGTGGGTCCGTCTTTTTATTAAGACAAGTGTATCACAGCAGTCCA
GGTATCGTTAGAACCAAGACGATTCGCACTAAGGTTTTAATTATCACACA
TTTGCTTTGTCTTGCTTCGTTCTCCTCCTTCATGTCGCGACGACTTATAC
TCTTATCGACCTCCC

Coding sequence (CDS) from alignment at scaffold_24:201272..202236-

>mRNA_8411 ID=mRNA_8411|Name=jgi.p|Nanoce1779_2|601927|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_24:201272..202236- (Nannochloropsis oceanica)
ATGGTGTGCGTCGGTTTCAGGATGCGGTGCATCTATTCGCACTCTCTACC
TTCATGTACTCATCCATGTTCTCCCGACTTCTCCTTTTTCCTCCCTCCCA
CTCTCCCCGACCAACAGAACAAGATCAAGGAAACCACCGAGTGGCTGGAC
GTGCATCAGTCGGCCGAGAAGGAGGAGTTCGAGGCCAAGCAGAAGGAGCT
CGAGGCTGTGGTCCTCCCCATTCTTCAGTCCCTCTCCGGAGGCGCCGGGG
GTATGCCTGGAGGCATGCCCGGCGGTATGCCTGACATGGGTGCGAGCGGT
GCGGGCGCTGGCCCGGCCCCGACTGCCGATGAGGGCCCCAAGATCGAGGA
GATCGATTAA

Synonyms

Publications