jgi.p|Nanoce1779_2|601925, mRNA_8410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601925
Unique NamemRNA_8410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1507
Alignment locationscaffold_24:198479..200476 -

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Properties
Property NameValue
TranscriptId602011
TrackFilteredModels2
ProteinId601925
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:198479..200476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601925gene_8410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601925mRNA_8410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8410CDS_8410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8410 ID=mRNA_8410|Name=jgi.p|Nanoce1779_2|601925|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp
AACAGCACTCCCAGCAGACGCAGCAGCAACAGCAGCTGTAGCAGGAGCAG
GAGGAGCGACAGTGGAGCAGCAGCAGTATTTCAGTCATGACAACGGCCTT
CTTCGAGGTGCTGGGCATGTACGTGCCTTCCGAGAACTACACGGAGCGTT
TTTACACGGTGCGCGGGAATGAGTTCCACCAAGTCTTCCAAGGCTTCCCA
GCCCTTGCCCCTTTATACATGGACTGGGAGAAGAATTACAATGCGGAGAA
GGTCTTTTGGTTCATTATCGACAACTCGTGGATTCCCTGGTTCTCGCTCT
GCGTGTATTTGCTCTTCATCTTCGGCTACCCCGCCCTGGCCAAACGCTAC
AATATCGGCTACATCTCCGCTCGGACACAGATGGCCTGCTGGAATTTCTT
GCTTGCTTCATTTAGTTGGATTGGAGCGATGCGGGTGGTACCTCACTTTT
TTTTCCTGCTCAAGGACGTGGGCTTTGAAGAGGTGTTGTGCGGGGCACCG
GAGCCGCTGTATGGCGACGGTGCTGTCGGATTCTGGATCCAGGCGTTTGT
CTTGAGCAAGGTGGCCGAGCTGCTGGATACGGTCTTTGTGGTATTGCGGC
AAAAAGACCCGATCTTCTTGCATTGGTACCACCATGTGACCGTGCTGCTC
TTCACCTGGTTCACGTACTCGAACGAGAACCCGGGGATCATCTTCATCGC
CATGAACTACTCGGTGCACGCCGTCATGTACACCTACTACTGGCTCGCCA
TCGTCAAGCGCGTCCCCGACTGGTTCCCCACATGGCTCATCACTCTCGCG
CAGATCGCACAGATGGTACGTCCCCCGCTCCCTCTCTGCTTCTCTCCCTC
CCTTTCCTGCTCCCCCACACCTTATTTGCTCAATCGAAGCGCCCTCCTCA
GGCGGTGCCGTGCCACGGCAATGTCGAGGACGGTGTCAGTGGGGCGGTGT
TAGTCATGTATAGAGCTGTAGGAATACCTTAATGGCTTCCTTGCTCGGTA
GGACTACCCCAAGGGCTCTGTTTGTCGCCTTGGACGCGACAGGGGCTCTG
GCCTAGTGACATGTGCTCACCCCTCCTTCCCTCTCTCCCCCCCTTCCTCC
CTCTTTCCCTCCGTCGCCGCCTAGATCGTGGGAGTGTTTGTCGCCTACAA
CTACTACCGCGTCTTGTCCTCGGGCGGCTCCTGCGCCGTCTCGACGGATC
TGCTGTGGGCATGCGCGTTGATGTACTCGACGTACCTCTACTTGTTTTGT
GAGTTTGCTGTCCGCAGGTACATCCTGGGCAGGGGCAACCGGGCAGTGGC
GGCGGGGAAGGGCAAGAAGAAGACCAAGTAGAGGCGAAGAAGAGTAGCTG
CAGCAGCAAACAACTATAGGCGAACAACACAAGAGCAGCAGCTGTAGCAA
GAAAAAAGGCAGAAAGGAAGGGAGGGAGGGAAGGTGTTGAGGAGGAGGAG
ACAGGAAAGGGGCAGGGGCTTGTGGAGGAGGGAGGGAGGGAGGGAGGGAA
AGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|601925

>mRNA_8410-protein ID=mRNA_8410-protein|Name=jgi.p|Nanoce1779_2|601925|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MTTAFFEVLGMYVPSENYTERFYTVRGNEFHQVFQGFPALAPLYMDWEKN
YNAEKVFWFIIDNSWIPWFSLCVYLLFIFGYPALAKRYNIGYISARTQMA
CWNFLLASFSWIGAMRVVPHFFFLLKDVGFEEVLCGAPEPLYGDGAVGFW
IQAFVLSKVAELLDTVFVVLRQKDPIFLHWYHHVTVLLFTWFTYSNENPG
IIFIAMNYSVHAVMYTYYWLAIVKRVPDWFPTWLITLAQIAQMVRPPLPL
CFSPSLSCSPTPYLLNRSALLRRCRATAMSRTVSVGRC*
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mRNA from alignment at scaffold_24:198479..200476-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8410 ID=mRNA_8410|Name=jgi.p|Nanoce1779_2|601925|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp|location=Sequence derived from alignment at scaffold_24:198479..200476- (Nannochloropsis oceanica)
AACAGCACTCCCAGCAGACGCAGCAGCAACAGCAGCTGTAGCAGGAGCAG
GAGGAGCGACAGTGGAGCAGCAGCAGTATTTCAGTCATGACAACGGCCTT
CTTCGAGGTGCTGGGCATGTACGTGCCTTCCGAGAACTACACGGAGCGTT
TTTACACGGTGCGCGGGAATGAGTTCCACCAAGTCTTCCAAGGCTTCCCA
GCCCTTGCCCCTTTATACATGGACTGGGAGAAGAATTACAATGCGGAGAA
GGTCTTTTGGTTCATTATCGACAACTCGTGGATTCCCTGGTTCTCGCTCT
GCGTGTATTTGCTCTTCATCTTCGGCTACCCCGCCCTGGCCAAACGCTAC
AATATCGGCTACATCTCCGCTCGGACACAGATGGCCTGCTGGAATTTCTT
GCTTGCTTCATTTAGTTGGATTGGAGCGATGCGGGTGGTACCTCACTTTT
TTTTCCTGCTCAAGGACGTGGGCTTTGAAGAGGTAGGGGGGGAAGGAGGG
AGGGAGGGGAAAAAGGGAAGGAGGACGATAGGTGGATAGAGTACTATTTT
GCTTCTAGTTTGGCAGAAAGGTCAGACACTTAAATCCGGAAGACGAAGAA
GCGATAAAATTCTTTTACAATGCTAAATTGTTTGACGTCTTGGTCATTCC
TTCCCTCCTTCTCCCCTTCCTCCCTCCTCCGCTCCTCCCCAGGTGTTGTG
CGGGGCACCGGAGCCGCTGTATGGCGACGGTGCTGTCGGATTCTGGATCC
AGGCGTTTGTCTTGAGCAAGGTGGCCGAGCTGCTGGATACGGTCTTTGTG
GTATTGCGGCAAAAAGACCCGATCTTCTTGCATTGGTACGTGCCCTCCTT
CCCTCCCTTTCCTCCCTCTCCCCCTCCCTCTTTCCTGCACCAACCCACGG
CGTTTGCTTGTCGTTGGGTTGCGGGAAAGTCTGAGAATGTCCTCACATTG
GCATGTGGGAGGGGTGAAAGAGAGAAAAAGAGAAAGAGATCGACGGAGGG
AGGGAAACTGGACCGGCTAAAAGGGACCGGGTAAAGGGGGCGGAGAAACA
CCAAGGAGAGGTCTTTCTCACTCATTCGTCCCTGCCTATCGACACTCCCC
CCCCCGCATTCCCTAGGTACCACCATGTGACCGTGCTGCTCTTCACCTGG
TTCACGTACTCGAACGAGAACCCGGGGATCATCTTCATCGCCATGAACTA
CTCGGTGCACGCCGTCATGTACACCTACTACTGGCTCGCCATCGTCAAGC
GCGTCCCCGACTGGTTCCCCACATGGCTCATCACTCTCGCGCAGATCGCA
CAGATGGTACGTCCCCCGCTCCCTCTCTGCTTCTCTCCCTCCCTTTCCTG
CTCCCCCACACCTTATTTGCTCAATCGAAGCGCCCTCCTCAGGCGGTGCC
GTGCCACGGCAATGTCGAGGACGGTGTCAGTGGGGCGGTGTTAGTCATGT
ATAGAGCTGTAGGAATACCTTAATGGCTTCCTTGCTCGGTAGGACTACCC
CAAGGGCTCTGTTTGTCGCCTTGGACGCGACAGGGGCTCTGGCCTAGTGA
CATGTGCTCACCCCTCCTTCCCTCTCTCCCCCCCTTCCTCCCTCTTTCCC
TCCGTCGCCGCCTAGATCGTGGGAGTGTTTGTCGCCTACAACTACTACCG
CGTCTTGTCCTCGGGCGGCTCCTGCGCCGTCTCGACGGATCTGCTGTGGG
CATGCGCGTTGATGTACTCGACGTACCTCTACTTGTTTTGTGAGTTTGCT
GTCCGCAGGTACATCCTGGGCAGGGGCAACCGGGCAGTGGCGGCGGGGAA
GGGCAAGAAGAAGACCAAGTAGAGGCGAAGAAGAGTAGCTGCAGCAGCAA
ACAACTATAGGCGAACAACACAAGAGCAGCAGCTGTAGCAAGAAAAAAGG
CAGAAAGGAAGGGAGGGAGGGAAGGTGTTGAGGAGGAGGAGACAGGAAAG
GGGCAGGGGCTTGTGGAGGAGGGAGGGAGGGAGGGAGGGAAAGAGGGA
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Coding sequence (CDS) from alignment at scaffold_24:198479..200476-

>mRNA_8410 ID=mRNA_8410|Name=jgi.p|Nanoce1779_2|601925|organism=Nannochloropsis oceanica|type=CDS|length=2601bp|location=Sequence derived from alignment at scaffold_24:198479..200476- (Nannochloropsis oceanica)
GTACCACCATGTGACCGTGCTGCTCTTCACCTGGTTCACGTACTCGAACG
AGAACCCGGGGATCATCTTCATCGCCATGAACTACTCGGTGCACGCCGTC
ATGTACACCTACTACTGGCTCGCCATCGTCAAGCGCGTCCCCGACTGGTT
CCCCACATGGCTCATCACTCTCGCGCAGATCGCACAGATGGTACGTCCCC
CGCTCCCTCTCTGCTTCTCTCCCTCCCTTTCCTGCTCCCCCACACCTTAT
TTGCTCAATCGAAGCGCCCTCCTCAGGCGGTGCCGTGCCACGGCAATGTC
GAGGACGGTGTCAGTGGGGCGGTGTTAGGTGTTGTGCGGGGCACCGGAGC
CGCTGTATGGCGACGGTGCTGTCGGATTCTGGATCCAGGCGTTTGTCTTG
AGCAAGGTGGCCGAGCTGCTGGATACGGTCTTTGTGGTATTGCGGCAAAA
AGACCCGATCTTCTTGCATTGATGACAACGGCCTTCTTCGAGGTGCTGGG
CATGTACGTGCCTTCCGAGAACTACACGGAGCGTTTTTACACGGTGCGCG
GGAATGAGTTCCACCAAGTCTTCCAAGGCTTCCCAGCCCTTGCCCCTTTA
TACATGGACTGGGAGAAGAATTACAATGCGGAGAAGGTCTTTTGGTTCAT
TATCGACAACTCGTGGATTCCCTGGTTCTCGCTCTGCGTGTATTTGCTCT
TCATCTTCGGCTACCCCGCCCTGGCCAAACGCTACAATATCGGCTACATC
TCCGCTCGGACACAGATGGCCTGCTGGAATTTCTTGCTTGCTTCATTTAG
TTGGATTGGAGCGATGCGGGTGGTACCTCACTTTTTTTTCCTGCTCAAGG
ACGTGGGCTTTGAAGAGGTACCACCATGTGACCGTGCTGCTCTTCACCTG
GTTCACGTACTCGAACGAGAACCCGGGGATCATCTTCATCGCCATGAACT
ACTCGGTGCACGCCGTCATGTACACCTACTACTGGCTCGCCATCGTCAAG
CGCGTCCCCGACTGGTTCCCCACATGGCTCATCACTCTCGCGCAGATCGC
ACAGATGGTACGTCCCCCGCTCCCTCTCTGCTTCTCTCCCTCCCTTTCCT
GCTCCCCCACACCTTATTTGCTCAATCGAAGCGCCCTCCTCAGGCGGTGC
CGTGCCACGGCAATGTCGAGGACGGTGTCAGTGGGGCGGTGTTAGGTGTT
GTGCGGGGCACCGGAGCCGCTGTATGGCGACGGTGCTGTCGGATTCTGGA
TCCAGGCGTTTGTCTTGAGCAAGGTGGCCGAGCTGCTGGATACGGTCTTT
GTGGTATTGCGGCAAAAAGACCCGATCTTCTTGCATTGATGACAACGGCC
TTCTTCGAGGTGCTGGGCATGTACGTGCCTTCCGAGAACTACACGGAGCG
TTTTTACACGGTGCGCGGGAATGAGTTCCACCAAGTCTTCCAAGGCTTCC
CAGCCCTTGCCCCTTTATACATGGACTGGGAGAAGAATTACAATGCGGAG
AAGGTCTTTTGGTTCATTATCGACAACTCGTGGATTCCCTGGTTCTCGCT
CTGCGTGTATTTGCTCTTCATCTTCGGCTACCCCGCCCTGGCCAAACGCT
ACAATATCGGCTACATCTCCGCTCGGACACAGATGGCCTGCTGGAATTTC
TTGCTTGCTTCATTTAGTTGGATTGGAGCGATGCGGGTGGTACCTCACTT
TTTTTTCCTGCTCAAGGACGTGGGCTTTGAAGAGGTACCACCATGTGACC
GTGCTGCTCTTCACCTGGTTCACGTACTCGAACGAGAACCCGGGGATCAT
CTTCATCGCCATGAACTACTCGGTGCACGCCGTCATGTACACCTACTACT
GGCTCGCCATCGTCAAGCGCGTCCCCGACTGGTTCCCCACATGGCTCATC
ACTCTCGCGCAGATCGCACAGATGGTACGTCCCCCGCTCCCTCTCTGCTT
CTCTCCCTCCCTTTCCTGCTCCCCCACACCTTATTTGCTCAATCGAAGCG
CCCTCCTCAGGCGGTGCCGTGCCACGGCAATGTCGAGGACGGTGTCAGTG
GGGCGGTGTTAGGTGTTGTGCGGGGCACCGGAGCCGCTGTATGGCGACGG
TGCTGTCGGATTCTGGATCCAGGCGTTTGTCTTGAGCAAGGTGGCCGAGC
TGCTGGATACGGTCTTTGTGGTATTGCGGCAAAAAGACCCGATCTTCTTG
CATTGATGACAACGGCCTTCTTCGAGGTGCTGGGCATGTACGTGCCTTCC
GAGAACTACACGGAGCGTTTTTACACGGTGCGCGGGAATGAGTTCCACCA
AGTCTTCCAAGGCTTCCCAGCCCTTGCCCCTTTATACATGGACTGGGAGA
AGAATTACAATGCGGAGAAGGTCTTTTGGTTCATTATCGACAACTCGTGG
ATTCCCTGGTTCTCGCTCTGCGTGTATTTGCTCTTCATCTTCGGCTACCC
CGCCCTGGCCAAACGCTACAATATCGGCTACATCTCCGCTCGGACACAGA
TGGCCTGCTGGAATTTCTTGCTTGCTTCATTTAGTTGGATTGGAGCGATG
CGGGTGGTACCTCACTTTTTTTTCCTGCTCAAGGACGTGGGCTTTGAAGA
G
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Synonyms
Publications