jgi.p|Nanoce1779_2|195416, mRNA_8409 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|195416
Unique NamemRNA_8409
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1209
Alignment locationscaffold_24:197971..199179 +

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Properties
Property NameValue
TranscriptId195502
TrackFilteredModels2
ProteinId195416
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:197971..199179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195416gene_8409Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195416mRNA_8409-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8409CDS_8409Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8409 ID=mRNA_8409|Name=jgi.p|Nanoce1779_2|195416|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
CACGGCACGGTACTTTACTGGTTCCGGGCTCTTCTTCTCTCTCTCTCTCT
CTTCGTCAAAAGGGAAAAAATAAGTAAAGTGGAAGACTGAAACAGCAGCC
CAGCAGGGAAAAGGCAAACCGACAGCAATGAGGATGTAAATGAAGGTGTG
AGTAGGTGGTACTACTGGTTTTGCTTTCCCCACCCCACCCCGGCTATTTC
TCCCTCTTACTCTTTGACTTCTCACTCTGTCTTATCACTCCTTGACTTCT
CCTGTTGGTGTTCCTGATGCCTGCTTATGGTAAATTTTGTCTGTCTTTCG
TCTTGAGCTCCTGCTGCTGCTGCTGCCACCGGTGCAGCAGCTTCAATATC
TTCTTCCTCTCCATCTTCTCCGTCTTCTTCTTTCTTCTACTCCTCGCTTC
CATCTCTCCTTCGCCCTTCCTTCCCTATCGTCTCTCATGTGGGTGCGGAC
ATTCTATTCGCATTTCAGGCATCATCCTACATAAGTACAATCACACGCCC
TGTCGCCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCTCCTCCACAAGCCC
CTGCCCCTTTCCTGTCTCCTCCTCCTCAACACCTTCCCTCCCTCCCTTCC
TTTCTGCCTTTTTTCTTGCTACAGCTGCTGCTCTTGTGTTGTTCGCCTAT
AGTTGTTTGCTGCTGCAGCTACTCTTCTTCGCCTCTACTTGGTCTTCTTC
TTGCCCTTCCCCGCCGCCACTGCCCGGTTGCCCCTGCCCAGGATGTACCT
GCGGACAGCAAACTCACAAAACAAGTAGAGGTACGTCGAGTACATCAACG
CGCATGCCCACAGCAGATCCGTCGAGACGGCGCAGGAGCCGCCCGAGGAC
AAGACGCGGTAGTAGTTGTAGGCGACAAACACTCCCACGATCTAGGCGGC
GACGGAGGGAAAGAGGGAGGAAGGGGGGGAGAGAGGGAAGGAGGGGTGAG
CACATGTCACTAGGCCAGAGCCCCTGTCGCGTCCAAGGCGACAAACAGAG
CCCTTGGGGTAGTCCTACCGAGCAAGGAAGCCATTAAGGTATTCCTACAG
CTCTATACATGACTAACACCGCCCCACTGACACCGTCCTCGACATTGCCG
TGGCACGGCACCGCCTGAGGAGGGCGCTTCGATTGAGCAAATAAGGTGTG
GGGGAGCAGGAAAGGGAGGGAGAGAAGCAGAGAGGGAGCGGGGGACGTAC
CATCTGTGC
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protein sequence of jgi.p|Nanoce1779_2|195416

>mRNA_8409-protein ID=mRNA_8409-protein|Name=jgi.p|Nanoce1779_2|195416|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MPAYGKFCLSFVLSSCCCCCHRCSSFNIFFLSIFSVFFFLLLLASISPSP
FLPYRLSCGCGHSIRISGIILHKYNHTPCRPPSFPPSLPPSSTSPCPFPV
SSSSTPSLPPFLSAFFLATAAALVLFAYSCLLLQLLFFASTWSSSCPSPP
PLPGCPCPGCTCGQQTHKTSRGTSSTSTRMPTADPSRRRRSRPRTRRGSS
CRRQTLPRSRRRRRERGRKGGREGRRGEHMSLGQSPCRVQGDKQSPWGSP
TEQGSH*
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mRNA from alignment at scaffold_24:197971..199179+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8409 ID=mRNA_8409|Name=jgi.p|Nanoce1779_2|195416|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at scaffold_24:197971..199179+ (Nannochloropsis oceanica)
CACGGCACGGTACTTTACTGGTTCCGGGCTCTTCTTCTCTCTCTCTCTCT
CTTCGTCAAAAGGGAAAAAATAAGTAAAGTGGAAGACTGAAACAGCAGCC
CAGCAGGGAAAAGGCAAACCGACAGCAATGAGGATGTAAATGAAGGTGTG
AGTAGGTGGTACTACTGGTTTTGCTTTCCCCACCCCACCCCGGCTATTTC
TCCCTCTTACTCTTTGACTTCTCACTCTGTCTTATCACTCCTTGACTTCT
CCTGTTGGTGTTCCTGATGCCTGCTTATGGTAAATTTTGTCTGTCTTTCG
TCTTGAGCTCCTGCTGCTGCTGCTGCCACCGGTGCAGCAGCTTCAATATC
TTCTTCCTCTCCATCTTCTCCGTCTTCTTCTTTCTTCTACTCCTCGCTTC
CATCTCTCCTTCGCCCTTCCTTCCCTATCGTCTCTCATGTGGGTGCGGAC
ATTCTATTCGCATTTCAGGCATCATCCTACATAAGTACAATCACACGCCC
TGTCGCCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCTCCTCCACAAGCCC
CTGCCCCTTTCCTGTCTCCTCCTCCTCAACACCTTCCCTCCCTCCCTTCC
TTTCTGCCTTTTTTCTTGCTACAGCTGCTGCTCTTGTGTTGTTCGCCTAT
AGTTGTTTGCTGCTGCAGCTACTCTTCTTCGCCTCTACTTGGTCTTCTTC
TTGCCCTTCCCCGCCGCCACTGCCCGGTTGCCCCTGCCCAGGATGTACCT
GCGGACAGCAAACTCACAAAACAAGTAGAGGTACGTCGAGTACATCAACG
CGCATGCCCACAGCAGATCCGTCGAGACGGCGCAGGAGCCGCCCGAGGAC
AAGACGCGGTAGTAGTTGTAGGCGACAAACACTCCCACGATCTAGGCGGC
GACGGAGGGAAAGAGGGAGGAAGGGGGGGAGAGAGGGAAGGAGGGGTGAG
CACATGTCACTAGGCCAGAGCCCCTGTCGCGTCCAAGGCGACAAACAGAG
CCCTTGGGGTAGTCCTACCGAGCAAGGAAGCCATTAAGGTATTCCTACAG
CTCTATACATGACTAACACCGCCCCACTGACACCGTCCTCGACATTGCCG
TGGCACGGCACCGCCTGAGGAGGGCGCTTCGATTGAGCAAATAAGGTGTG
GGGGAGCAGGAAAGGGAGGGAGAGAAGCAGAGAGGGAGCGGGGGACGTAC
CATCTGTGC
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Coding sequence (CDS) from alignment at scaffold_24:197971..199179+

>mRNA_8409 ID=mRNA_8409|Name=jgi.p|Nanoce1779_2|195416|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_24:197971..199179+ (Nannochloropsis oceanica)
ATGCCTGCTTATGGTAAATTTTGTCTGTCTTTCGTCTTGAGCTCCTGCTG
CTGCTGCTGCCACCGGTGCAGCAGCTTCAATATCTTCTTCCTCTCCATCT
TCTCCGTCTTCTTCTTTCTTCTACTCCTCGCTTCCATCTCTCCTTCGCCC
TTCCTTCCCTATCGTCTCTCATGTGGGTGCGGACATTCTATTCGCATTTC
AGGCATCATCCTACATAAGTACAATCACACGCCCTGTCGCCCTCCCTCTT
TCCCTCCCTCCCTCCCTCCCTCCTCCACAAGCCCCTGCCCCTTTCCTGTC
TCCTCCTCCTCAACACCTTCCCTCCCTCCCTTCCTTTCTGCCTTTTTTCT
TGCTACAGCTGCTGCTCTTGTGTTGTTCGCCTATAGTTGTTTGCTGCTGC
AGCTACTCTTCTTCGCCTCTACTTGGTCTTCTTCTTGCCCTTCCCCGCCG
CCACTGCCCGGTTGCCCCTGCCCAGGATGTACCTGCGGACAGCAAACTCA
CAAAACAAGTAGAGGTACGTCGAGTACATCAACGCGCATGCCCACAGCAG
ATCCGTCGAGACGGCGCAGGAGCCGCCCGAGGACAAGACGCGGTAGTAGT
TGTAGGCGACAAACACTCCCACGATCTAGGCGGCGACGGAGGGAAAGAGG
GAGGAAGGGGGGGAGAGAGGGAAGGAGGGGTGAGCACATGTCACTAGGCC
AGAGCCCCTGTCGCGTCCAAGGCGACAAACAGAGCCCTTGGGGTAGTCCT
ACCGAGCAAGGAAGCCATTAA
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Synonyms
Publications