jgi.p|Nanoce1779_2|601922, mRNA_8408 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601922
Unique Name	mRNA_8408
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1553
Alignment location	scaffold_24:197005..198557 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602008
Track	FilteredModels2
ProteinId	601922

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:197005..198557 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601922	gene_8408	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601922	mRNA_8408-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8408	CDS_8408	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:197005..198557-
coding sequence from alignment at scaffold_24:197005..198557-

mRNA sequence

>mRNA_8408 ID=mRNA_8408|Name=jgi.p|Nanoce1779_2|601922|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
GGAAGGTGTTGAGGAGGAGGAGACAGGAAAGGGGCAGGGGCTTGTGGAGG
AGGGAGGGAGGGAGGGAGGGAAAGAGGGAGGGCGACAGGGCGTGTGATTG
TACTTATGTAGGATGATGCCTGAAATGCGAATAGAATGTCCGCACCCACA
TGAGAGACGATAGGGAAGGAAGGGCGAAGGAGAGATGGAAGCGAGGAGTA
GAAGAAAGAAGAAGACGGAGAAGATGGAGAGGAAGAAGATATTGAAGCTG
CTGCACCGGTGGCAGCAGCAGCAGCAGGAGCTCAAGACGAAAGACAGACA
AAATTTACCATAAGCAGGCATCAGGAACACCAACAGGAGAAGTCAAGGAG
TGATAAGACAGAGTGAGAAGTCAAAGAGTAAGAGGGAGAAATAGCCGGGG
TGGGGTGGGGAAAGCAAAACCAGTAGTACCACCTACTCACACCTTCATTT
ACATCCTCATTGCTGTCGGTTTGCCTTTTCCCTGCTGGGCTGCTGTTTCA
GTCTTCCACTTTACTTATTTTTTCCCTTTTGACGAAGAGAGAGAGAGAGA
GAAGAAGAGCCCGGAACCAGTAAAGTACCGTGCCGTGACTACTCCTTCTG
CCACGCCAGGATTACCTCTAGTGCCATGCCATGATTACCACCACTACCGG
GCTATGATTACTTCTGGTATCATGCCGCCAGGTCATCATAATATCCTCGT
TTTCCAACCGTATGAGTGTTTATTTTGTTTTCCTTTTCTTGGTTTTCGCA
GTCCTCCGTATGCGCCAGCATTCTTCTCTGTTTTCGCCTTTCTACTGGAG
GAGTAGCCGGAGAGGGGGGGCACAGGAGGATAACGAAAGCCAAAGCCAGA
CCTAATGTCTGTTAGTTTGTCTGTTAGTTTGGTGTTTCTTGCTTCTTATT
TAGCTACTCTTTTCTTTCCCCCCGCTCGTATTGCTGTGACTGTCAGTCCT
CCATGGTCTGATTACATTCCGTTTCTTGGGTATCTTCATTTGATCTTCAT
TTCTTTCAGTACTAGTCTCCTCTCCCACCTCTTCTCCTCTCTACTTCCCT
CCCTCCCTCCCTCACCCTGACCCTGCATGGTCCAGCCAGCTACCTCCCCA
CCATGGATTTGTGTCCATCCATTCCTCCGAGTTTGTGCCGCTCATTCAGC
CCCTGACAGCCATACCACCCGTACCCATGCAGTTGACACCAAAAGCGCCG
CGTCACTCGGCCGCCTCAGTAAAGGGGGAGGAGGGTAGGGAGGGTTGGAG
GGAGCGGGGGAAGGTGGACAGGACTAACCCAACCGGTACTCCGGGCGCAC
GGAGTAGATTTTTCCCCCATCCACGGGGTCTATCTCGGTGGTGGAAATGC
GTGCCAGCACCCTCTTAACCAGGTCCACGTCGCTCGGCCGCTTCAACAAG
TCCTTCACCTCCCTGCTCAGGTCCTTCCCCGTCACCCGCCCTCCCAAGCC
CACCAACCGCTCCCTCACCGCGCTCTCCAGGCTACCCGGAGCAAAAGTCA
CCTTGGCCCTCTTTCCTCCTGCCCCTGCTCCTCCTCCTCTTCCTTCCCCT
CCT

protein sequence of jgi.p|Nanoce1779_2|601922

>mRNA_8408-protein ID=mRNA_8408-protein|Name=jgi.p|Nanoce1779_2|601922|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MSVSLSVSLVFLASYLATLFFPPARIAVTVSPPWSDYIPFLGYLHLIFIS
FSTSLLSHLFSSLLPSLPPSP*

mRNA from alignment at scaffold_24:197005..198557-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8408 ID=mRNA_8408|Name=jgi.p|Nanoce1779_2|601922|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp|location=Sequence derived from alignment at scaffold_24:197005..198557- (Nannochloropsis oceanica)
GGAAGGTGTTGAGGAGGAGGAGACAGGAAAGGGGCAGGGGCTTGTGGAGG
AGGGAGGGAGGGAGGGAGGGAAAGAGGGAGGGCGACAGGGCGTGTGATTG
TACTTATGTAGGATGATGCCTGAAATGCGAATAGAATGTCCGCACCCACA
TGAGAGACGATAGGGAAGGAAGGGCGAAGGAGAGATGGAAGCGAGGAGTA
GAAGAAAGAAGAAGACGGAGAAGATGGAGAGGAAGAAGATATTGAAGCTG
CTGCACCGGTGGCAGCAGCAGCAGCAGGAGCTCAAGACGAAAGACAGACA
AAATTTACCATAAGCAGGCATCAGGAACACCAACAGGAGAAGTCAAGGAG
TGATAAGACAGAGTGAGAAGTCAAAGAGTAAGAGGGAGAAATAGCCGGGG
TGGGGTGGGGAAAGCAAAACCAGTAGTACCACCTACTCACACCTTCATTT
ACATCCTCATTGCTGTCGGTTTGCCTTTTCCCTGCTGGGCTGCTGTTTCA
GTCTTCCACTTTACTTATTTTTTCCCTTTTGACGAAGAGAGAGAGAGAGA
GAAGAAGAGCCCGGAACCAGTAAAGTACCGTGCCGTGACTACTCCTTCTG
CCACGCCAGGATTACCTCTAGTGCCATGCCATGATTACCACCACTACCGG
GCTATGATTACTTCTGGTATCATGCCGCCAGGTCATCATAATATCCTCGT
TTTCCAACCGTATGAGTGTTTATTTTGTTTTCCTTTTCTTGGTTTTCGCA
GTCCTCCGTATGCGCCAGCATTCTTCTCTGTTTTCGCCTTTCTACTGGAG
GAGTAGCCGGAGAGGGGGGGCACAGGAGGATAACGAAAGCCAAAGCCAGA
CCTAATGTCTGTTAGTTTGTCTGTTAGTTTGGTGTTTCTTGCTTCTTATT
TAGCTACTCTTTTCTTTCCCCCCGCTCGTATTGCTGTGACTGTCAGTCCT
CCATGGTCTGATTACATTCCGTTTCTTGGGTATCTTCATTTGATCTTCAT
TTCTTTCAGTACTAGTCTCCTCTCCCACCTCTTCTCCTCTCTACTTCCCT
CCCTCCCTCCCTCACCCTGACCCTGCATGGTCCAGCCAGCTACCTCCCCA
CCATGGATTTGTGTCCATCCATTCCTCCGAGTTTGTGCCGCTCATTCAGC
CCCTGACAGCCATACCACCCGTACCCATGCAGTTGACACCAAAAGCGCCG
CGTCACTCGGCCGCCTCAGTAAAGGGGGAGGAGGGTAGGGAGGGTTGGAG
GGAGCGGGGGAAGGTGGACAGGACTAACCCAACCGGTACTCCGGGCGCAC
GGAGTAGATTTTTCCCCCATCCACGGGGTCTATCTCGGTGGTGGAAATGC
GTGCCAGCACCCTCTTAACCAGGTCCACGTCGCTCGGCCGCTTCAACAAG
TCCTTCACCTCCCTGCTCAGGTCCTTCCCCGTCACCCGCCCTCCCAAGCC
CACCAACCGCTCCCTCACCGCGCTCTCCAGGCTACCCGGAGCAAAAGTCA
CCTTGGCCCTCTTTCCTCCTGCCCCTGCTCCTCCTCCTCTTCCTTCCCCT
CCT

Coding sequence (CDS) from alignment at scaffold_24:197005..198557-

>mRNA_8408 ID=mRNA_8408|Name=jgi.p|Nanoce1779_2|601922|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_24:197005..198557- (Nannochloropsis oceanica)
ATGTCTGTTAGTTTGTCTGTTAGTTTGGTGTTTCTTGCTTCTTATTTAGC
TACTCTTTTCTTTCCCCCCGCTCGTATTGCTGTGACTGTCAGTCCTCCAT
GGTCTGATTACATTCCGTTTCTTGGGTATCTTCATTTGATCTTCATTTCT
TTCAGTACTAGTCTCCTCTCCCACCTCTTCTCCTCTCTACTTCCCTCCCT
CCCTCCCTCACCCTGA

Synonyms

Publications