jgi.p|Nanoce1779_2|601916, mRNA_8406 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601916
Unique NamemRNA_8406
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length422
Alignment locationscaffold_24:194010..194431 -

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Properties
Property NameValue
TranscriptId602002
TrackFilteredModels2
ProteinId601916
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:194010..194431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601916gene_8406Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601916mRNA_8406-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8406CDS_8406Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8406 ID=mRNA_8406|Name=jgi.p|Nanoce1779_2|601916|organism=Nannochloropsis oceanica|type=mRNA|length=422bp
GTTCGCATACCAAAGCGCAAGAAGAGAAACAAACAATAAGGACAAGTAAA
TGTACTTCTGATGGTCTTTATGGCTTATTTGTACCGTCATCTGCTCTCAT
TCCCCCTCTTCGTCCTGTCCCTCTGTATTGCTTACATCGCCACATACACG
CACACACATATATACTCACGTCCACACCTCCATAAGAGAAAACATGCAAA
AGGTGCCCATCTACACTCACTTACTGACTCTTTTTCAACCTCTCTTCCCT
ATCCATGTTTTCACTCATTCAAGGAACGGAAACGAAATACATAGACCACA
CCACAGCACAACTACAAACACGTAAAGCTAGCCCTAATCACGTCAGGTTG
CATGCGATAGTTCTATAGGAGTGTAGGAACAGCAGAAAAAAAGAACTAAT
CTATGTACACTTTCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|601916

>mRNA_8406-protein ID=mRNA_8406-protein|Name=jgi.p|Nanoce1779_2|601916|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MVFMAYLYRHLLSFPLFVLSLCIAYIATYTHTHIYSRPHLHKRKHAKGAH
LHSLTDSFSTSLPYPCFHSFKERKRNT*
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mRNA from alignment at scaffold_24:194010..194431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8406 ID=mRNA_8406|Name=jgi.p|Nanoce1779_2|601916|organism=Nannochloropsis oceanica|type=mRNA|length=422bp|location=Sequence derived from alignment at scaffold_24:194010..194431- (Nannochloropsis oceanica)
GTTCGCATACCAAAGCGCAAGAAGAGAAACAAACAATAAGGACAAGTAAA
TGTACTTCTGATGGTCTTTATGGCTTATTTGTACCGTCATCTGCTCTCAT
TCCCCCTCTTCGTCCTGTCCCTCTGTATTGCTTACATCGCCACATACACG
CACACACATATATACTCACGTCCACACCTCCATAAGAGAAAACATGCAAA
AGGTGCCCATCTACACTCACTTACTGACTCTTTTTCAACCTCTCTTCCCT
ATCCATGTTTTCACTCATTCAAGGAACGGAAACGAAATACATAGACCACA
CCACAGCACAACTACAAACACGTAAAGCTAGCCCTAATCACGTCAGGTTG
CATGCGATAGTTCTATAGGAGTGTAGGAACAGCAGAAAAAAAGAACTAAT
CTATGTACACTTTCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_24:194010..194431-

>mRNA_8406 ID=mRNA_8406|Name=jgi.p|Nanoce1779_2|601916|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_24:194010..194431- (Nannochloropsis oceanica)
ATGGTCTTTATGGCTTATTTGTACCGTCATCTGCTCTCATTCCCCCTCTT
CGTCCTGTCCCTCTGTATTGCTTACATCGCCACATACACGCACACACATA
TATACTCACGTCCACACCTCCATAAGAGAAAACATGCAAAAGGTGCCCAT
CTACACTCACTTACTGACTCTTTTTCAACCTCTCTTCCCTATCCATGTTT
TCACTCATTCAAGGAACGGAAACGAAATACATAG
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Synonyms
Publications