jgi.p|Nanoce1779_2|601912, mRNA_8404 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601912
Unique NamemRNA_8404
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length898
Alignment locationscaffold_24:189142..190330 +

Link to JBrowse

Properties
Property NameValue
TranscriptId601998
TrackFilteredModels2
ProteinId601912
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:189142..190330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601912gene_8404Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601912mRNA_8404-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8404CDS_8404Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8404 ID=mRNA_8404|Name=jgi.p|Nanoce1779_2|601912|organism=Nannochloropsis oceanica|type=mRNA|length=898bp
ACAGGCAAGAACCAATGGCACCAGCTAAGAAGACCGCGACAGCCGCGCAG
GGCGAAATCGACGATGAGCAGCGTTTGCAATCCTTGTACTACCGTGCAGT
CTTCAAGAAGCGAAAGGTAACCCTCTTCACCCGCACTCATTACAAGATTC
TCCAAGCCCTCTACTCTTCCTCGTCATCCTTTTCCTCCCTTCCTCCCCGC
TCCTCGTCCATAACGACAATATGGCCTCTGATCGAGTCCTTTTTGAAGGA
TCAACGTGAATTGATGTCACAACAAGCATATCTTGATCGAGTCTACGCTG
CGGCGCCTTGGCTCGTCCCATCTCCTGCTGCTACTATAGCGAATGCACCC
TCCTCCTCCAGCTCCTCTTCTCTGGGCTGGCGTGTGACTCGCCGCCTCCT
CCACGAGCAGCTAATACACGAAGAAGACAGATATAATCAACAATGCCGTC
GTCATCATCCTTTACTCATGGCCATCGGCAACGAAATTCGTCGGCTATCT
CCTTCCCCTGCTAGTGGCGATGCTGCTGCCGGTGCTGGTGCTTGTGCTGC
TGCTGCCGCTCTTGCAAGGGCGGTTCATCCTCCCTTATCCTTCATATCTT
CCTCTTCGTCTTCTCCTCCCCCTTCTCCACTTAACGAGCACCACCAGTAT
TCCCCCTCGTCTCCGGCTTCTGCTGCTGCTCCTCCAGGCCCTCCCTCCAT
TCCTCCCTCTCTCCTGCACCACCCCAAAGAAGACCCTCTTGAAATCGAAT
TGAGGCATCTGGATTCCGCAGCCAGCATGGAAAATAAACTCCATTTGTGG
GCACGATTACACACTGTCGTGTACCGAACAATTACTTTGGAAGGAGGAGG
AGGAGGAGGAGAAGGATGGGGGGGAGGAAGAGGAGTAGGAGGAAGAAG
back to top

protein sequence of jgi.p|Nanoce1779_2|601912

>mRNA_8404-protein ID=mRNA_8404-protein|Name=jgi.p|Nanoce1779_2|601912|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MLLPVLVLVLLLPLLQGRFILPYPSYLPLRLLLPLLHLTSTTSIPPRLRL
LLLLLQALPPFLPLSCTTPKKTLLKSN*
back to top

mRNA from alignment at scaffold_24:189142..190330+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8404 ID=mRNA_8404|Name=jgi.p|Nanoce1779_2|601912|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at scaffold_24:189142..190330+ (Nannochloropsis oceanica)
ACAGGCAAGAACCAATGGCACCAGCTAAGAAGACCGCGACAGCCGCGCAG
GGCGAAATCGACGATGAGCAGCGTTTGCAATCCTTGTACTACCGTGCAGT
CTTCAAGAAGCGAAAGGTACATGGGAATTGTGCAAGTAGGAGTGCAAAGC
ATTCCCTCTTCCCCTCCTTCCTATCTTCCTCACTCTAACTCCCTCCAACT
TTTGCATTTTTCTTCCCTCCCTCCTTCTCTCTCTGCCTTCTTTCCCTGAA
GGTAACCCTCTTCACCCGCACTCATTACAAGATTCTCCAAGCCCTCTACT
CTTCCTCGTCATCCTTTTCCTCCCTTCCTCCCCGCTCCTCGTCCATAACG
ACAATATGGCCTCTGATCGAGTCCTTTTTGAAGGATCAACGTGAATTGAT
GTCACAACAAGCATATCTTGATCGAGTCTACGCTGCGGCGCCTTGGCTCG
TCCCATCTCCTGCTGCTACTATAGCGGTAAGGAGGGAAAGACATGTGGGA
AATAGACAGGGACTGGACGTGACTGATTTTCAAGAGGAAGAGTGAAGTGG
ACTTAATCCGATTAGATGAAGGACTCTTACTAACAGCTCAATTCAATTTC
TCTCTTCTCTTCCCCATGCTATAATATCACAGAATGCACCCTCCTCCTCC
AGCTCCTCTTCTCTGGGCTGGCGTGTGACTCGCCGCCTCCTCCACGAGCA
GCTAATACACGAAGAAGACAGATATAATCAACAATGCCGTCGTCATCATC
CTTTACTCATGGCCATCGGCAACGAAATTCGTCGGCTATCTCCTTCCCCT
GCTAGTGGCGATGCTGCTGCCGGTGCTGGTGCTTGTGCTGCTGCTGCCGC
TCTTGCAAGGGCGGTTCATCCTCCCTTATCCTTCATATCTTCCTCTTCGT
CTTCTCCTCCCCCTTCTCCACTTAACGAGCACCACCAGTATTCCCCCTCG
TCTCCGGCTTCTGCTGCTGCTCCTCCAGGCCCTCCCTCCATTCCTCCCTC
TCTCCTGCACCACCCCAAAGAAGACCCTCTTGAAATCGAATTGAGGCATC
TGGATTCCGCAGCCAGCATGGAAAATAAACTCCATTTGTGGGCACGATTA
CACACTGTCGTGTACCGAACAATTACTTTGGAAGGAGGAGGAGGAGGAGG
AGAAGGATGGGGGGGAGGAAGAGGAGTAGGAGGAAGAAG
back to top

Coding sequence (CDS) from alignment at scaffold_24:189142..190330+

>mRNA_8404 ID=mRNA_8404|Name=jgi.p|Nanoce1779_2|601912|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_24:189142..190330+ (Nannochloropsis oceanica)
ATGCTGCTGCCGGTGCTGGTGCTTGTGCTGCTGCTGCCGCTCTTGCAAGG
GCGGTTCATCCTCCCTTATCCTTCATATCTTCCTCTTCGTCTTCTCCTCC
CCCTTCTCCACTTAACGAGCACCACCAGTATTCCCCCTCGTCTCCGGCTT
CTGCTGCTGCTCCTCCAGGCCCTCCCTCCATTCCTCCCTCTCTCCTGCAC
CACCCCAAAGAAGACCCTCTTGAAATCGAATTGA
back to top
Synonyms
Publications