jgi.p|Nanoce1779_2|601899, mRNA_8402 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601899
Unique Name	mRNA_8402
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	836
Alignment location	scaffold_24:186532..187367 +

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Properties


Property Name	Value
TranscriptId	601985
Track	FilteredModels2
ProteinId	601899

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:186532..187367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601899	gene_8402	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601899	mRNA_8402-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8402	CDS_8402	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:186532..187367+
coding sequence from alignment at scaffold_24:186532..187367+

mRNA sequence

>mRNA_8402 ID=mRNA_8402|Name=jgi.p|Nanoce1779_2|601899|organism=Nannochloropsis oceanica|type=mRNA|length=836bp
TGGGGGGATGGGGGGAGGGATGGATGATGAGGCGACGAGGCAGAAGGTTT
TGCATGCTGAGAGGATGCGGATTGCCATGGCCAACATGAGCGAGGGACAA
AAGGAGAGATTTGAGTTTTTCCGTCGTTCGCATTTTCACAGGGACACGAT
CAAGAAGATCATGCTCGAGAGCTTCAGTCGAATCCGCGAAGGGTCTACCT
ACCCTCGTTCCGCCGCTGTTGCTAGTGCTGCTGCCCCAGGAAGAGGAGGG
GATGAGGGGGGCGAGGGACTGGGTGTTGACATGAATGAGCAGATGGTGAT
CGTGATGAGTGCACTTTGCAAGCTGTTTGTGGGTGACTTGGTGCACGGCG
CCCGGCAGGTGATGGAGGAGAGGGGGGAGGACGGGGCAATAGCACCCGCG
AGGCTGCGGGAAGCCTTGAGACGGGCAGTGAGGGAGAAGAGGCTGCCGGT
GATGCGAGGAGCGCTACGACCCCCTCTTCCTCCCTTCCCTTGAGGAAATT
GAAACAATCAAATAATCAAATTGAGGAGCTAGTCTGATGGGAGTCAAACA
GGGAGGAGGAATCGACTGTTGAAGGCGAGGAAGGAACCACTTTTCATTAC
TACTGCGAGCAGATAGATCAAAAGGCGACGGAAAGCATAAATTAACAAAT
AATTCCGCTCTTTATCTGCCTCTCTCTCTACCTCCTTACCTCTTCATCGA
GCCCTTCCCTCCCCCTGTCCTGCGTCTCCCCGGGGCCACTGCGGCCGCCC
GACGACCACGATGTCCCTCCCTAACCGATGCACATGCCAGCCCCCTCCTT
TCCTCCCTCCCTCCCCCAGCCGTACCAGCCAGGGAC

protein sequence of jgi.p|Nanoce1779_2|601899

>mRNA_8402-protein ID=mRNA_8402-protein|Name=jgi.p|Nanoce1779_2|601899|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MGGGMDDEATRQKVLHAERMRIAMANMSEGQKERFEFFRRSHFHRDTIKK
IMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVM
SALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMR
GALRPPLPPFP*

mRNA from alignment at scaffold_24:186532..187367+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8402 ID=mRNA_8402|Name=jgi.p|Nanoce1779_2|601899|organism=Nannochloropsis oceanica|type=mRNA|length=836bp|location=Sequence derived from alignment at scaffold_24:186532..187367+ (Nannochloropsis oceanica)
TGGGGGGATGGGGGGAGGGATGGATGATGAGGCGACGAGGCAGAAGGTTT
TGCATGCTGAGAGGATGCGGATTGCCATGGCCAACATGAGCGAGGGACAA
AAGGAGAGATTTGAGTTTTTCCGTCGTTCGCATTTTCACAGGGACACGAT
CAAGAAGATCATGCTCGAGAGCTTCAGTCGAATCCGCGAAGGGTCTACCT
ACCCTCGTTCCGCCGCTGTTGCTAGTGCTGCTGCCCCAGGAAGAGGAGGG
GATGAGGGGGGCGAGGGACTGGGTGTTGACATGAATGAGCAGATGGTGAT
CGTGATGAGTGCACTTTGCAAGCTGTTTGTGGGTGACTTGGTGCACGGCG
CCCGGCAGGTGATGGAGGAGAGGGGGGAGGACGGGGCAATAGCACCCGCG
AGGCTGCGGGAAGCCTTGAGACGGGCAGTGAGGGAGAAGAGGCTGCCGGT
GATGCGAGGAGCGCTACGACCCCCTCTTCCTCCCTTCCCTTGAGGAAATT
GAAACAATCAAATAATCAAATTGAGGAGCTAGTCTGATGGGAGTCAAACA
GGGAGGAGGAATCGACTGTTGAAGGCGAGGAAGGAACCACTTTTCATTAC
TACTGCGAGCAGATAGATCAAAAGGCGACGGAAAGCATAAATTAACAAAT
AATTCCGCTCTTTATCTGCCTCTCTCTCTACCTCCTTACCTCTTCATCGA
GCCCTTCCCTCCCCCTGTCCTGCGTCTCCCCGGGGCCACTGCGGCCGCCC
GACGACCACGATGTCCCTCCCTAACCGATGCACATGCCAGCCCCCTCCTT
TCCTCCCTCCCTCCCCCAGCCGTACCAGCCAGGGAC

Coding sequence (CDS) from alignment at scaffold_24:186532..187367+

>mRNA_8402 ID=mRNA_8402|Name=jgi.p|Nanoce1779_2|601899|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_24:186532..187367+ (Nannochloropsis oceanica)
ATGGGGGGAGGGATGGATGATGAGGCGACGAGGCAGAAGGTTTTGCATGC
TGAGAGGATGCGGATTGCCATGGCCAACATGAGCGAGGGACAAAAGGAGA
GATTTGAGTTTTTCCGTCGTTCGCATTTTCACAGGGACACGATCAAGAAG
ATCATGCTCGAGAGCTTCAGTCGAATCCGCGAAGGGTCTACCTACCCTCG
TTCCGCCGCTGTTGCTAGTGCTGCTGCCCCAGGAAGAGGAGGGGATGAGG
GGGGCGAGGGACTGGGTGTTGACATGAATGAGCAGATGGTGATCGTGATG
AGTGCACTTTGCAAGCTGTTTGTGGGTGACTTGGTGCACGGCGCCCGGCA
GGTGATGGAGGAGAGGGGGGAGGACGGGGCAATAGCACCCGCGAGGCTGC
GGGAAGCCTTGAGACGGGCAGTGAGGGAGAAGAGGCTGCCGGTGATGCGA
GGAGCGCTACGACCCCCTCTTCCTCCCTTCCCTTGA

Synonyms

Publications