jgi.p|Nanoce1779_2|195140, mRNA_8401 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|195140
Unique NamemRNA_8401
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length867
Alignment locationscaffold_24:182916..184482 -

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Properties
Property NameValue
TranscriptId195226
TrackFilteredModels2
ProteinId195140
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:182916..184482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195140gene_8401Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195140mRNA_8401-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8401CDS_8401Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8401 ID=mRNA_8401|Name=jgi.p|Nanoce1779_2|195140|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
TTCCCTCAGGTATTTTCAAGGCGACCCTGGATTCGGGCAAGCTGGCCGAG
GACTTGAAGACGAGCACGGGGGACAAGTGGGACATCGCCAAGATCTACCC
CCTCGACGCCACTTTCGACACCCCCGATGATGTGCCTGAGGCCGTCAAGA
CCAACAAGCGCTACGCTGGCCTGGGCGGGTACACCATCTCTGAGGTGGCC
AAGGAAGTCGAGAAGGACTTCGGGCTACCTGACTGCCTCCTCGGCCTCGG
CCTACTCTATGGTGTCTCTCGTACAGCACTTCGCGCCCATCATGAACGAG
GGCGGGTCGGTCCTCTCCCTCACCTACATCGCCTCGGAGAAGGTCATCCC
GGGCTACGGCGGCGGCATGAGCAGCGCCAAGGCCCAGCTGGAGTCGGACA
CGCGAGTGCTGGCCTTTGAGGCGGGAAGGAAGTACAAGATCCGCGTCAAC
ACCATCTCGGCGGGGCCCTTGAAGAGCCGGGCGGCCAGCGCCATCGGGGG
AGGGGAGAAGGGGAAGAAGACCTTCATCGAGTACGCAATCGACTACAGCC
GGGCCAACGCTCCCCTGGCACAAGACCTGTACGCCGATGATGTAGGCGCC
ACGGGGCTCTTCCTCTCCTCGCCTATGGCCCGTTGTGTGACGGGCGTGAC
CATGTACGTTGACAACGGCCTGCACGCCATGGGGATGGCGCTTGACTCGG
TGGCGATGCAGCAGGAGTAAGGTCCTTCCCTCCTTCCGTCCCTCCTTCTT
TCCTTCCTCCCTTCCTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCTGTTC
CTCATGATGTTTGTGTCGGGTGTGCATGAGGGGTGTGGAGGCTCTTGACC
TGTGAAAGATGAATGCT
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protein sequence of jgi.p|Nanoce1779_2|195140

>mRNA_8401-protein ID=mRNA_8401-protein|Name=jgi.p|Nanoce1779_2|195140|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MMCLRPSRPTSATLAWAGTPSLRWPRKSRRTSGYLTASSASAYSMVSLVQ
HFAPIMNEGGSVLSLTYIASEKVIPGYGGGMSSAKAQLESDTRVLAFEAG
RKYKIRVNTISAGPLKSRAASAIGGGEKGKKTFIEYAIDYSRANAPLAQD
LYADDVGATGLFLSSPMARCVTGVTMYVDNGLHAMGMALDSVAMQQE*
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mRNA from alignment at scaffold_24:182916..184482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8401 ID=mRNA_8401|Name=jgi.p|Nanoce1779_2|195140|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp|location=Sequence derived from alignment at scaffold_24:182916..184482- (Nannochloropsis oceanica)
TTCCCTCAGGTATTTTCAAGGCGACCCTGGATTCGGGCAAGCTGGCCGAG
GACTTGAAGACGAGCACGGGGGACAAGTGGGACATCGCCAAGATCTACCC
CCTCGACGCCACTTTCGACACCCCCGATGATGTGCCTGAGGCCGTCAAGA
CCAACAAGCGCTACGCTGGCCTGGGCGGGTACACCATCTCTGAGGTACGC
CCTCGCTCCCTCTTTCTCTCTTTCCCTCCCTTCCTGTCCATTCACTAGGA
TCATGGTGCCCATCAGGTCGTCTTTCCTATGTCCGGCCCCCATCTACAAA
TGTCAAGGTTTCCTTCACACTCACCTCTCCCTCCCTTCCACCCTCCCTCC
CTCCCTCCCTCCCCTCCTCCCTTCCACCCATCCTCAGGTGGCCAAGGAAG
TCGAGAAGGACTTCGGTAAGATTGACATTCTCATCCACTCCCTCGCTAAC
GGGCCTGAAGTCACCAAGCCCCTTTTGGAGACCACCCGCAATGTGAGCCA
GCCCTCCCTCCGTCCCTTCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTC
CCTTTTTTCCTCCTTCTTCACATCTTTTCCGCTCCATGACCCCCTCTCTC
CTCTGACCTCCTCTTCCTGAATCGTTGTGGACCAAGGCGGTTCCGTCCCT
CTCTCTCCCCTACGTCTGAAATCCAGGGAACGAACAAAAGGAATCTTTAG
AAGATACCATATCTTTTTGAAAAAAAGAAAAATCTCACCCCCAACAAACC
ACACCCACGCAAACAGGGCTACCTGACTGCCTCCTCGGCCTCGGCCTACT
CTATGGTGTCTCTCGTACAGCACTTCGCGCCCATCATGAACGAGGGCGGG
TCGGTCCTCTCCCTCACCTACATCGCCTCGGAGAAGGTCATCCCGGGCTA
CGGCGGCGGCATGAGCAGCGCCAAGGCCCAGCTGGAGTCGGACACGCGAG
TGCTGGCCTTTGAGGCGGGAAGGAAGTACAAGATCCGCGTCAACACCATC
TCGGCGGGGCCCTTGAAGAGCCGGGCGGCCAGCGCCATCGGGGGAGGGGA
GAAGGGGAAGAAGGTAAGGAAGGAGGGTGGGAGCGAAGGAGGAAGCGGAG
GAGGGTAGGTTGTTTGACGACCCTCTTTTGTAACAATGCAGGTCCTTGGC
AGAGCTGAGGAGTGTTTGGCATCCACTCATCATTCCTATCTTCCCTCCCT
CCCCCCCCCCCCCCCCCAGACCTTCATCGAGTACGCAATCGACTACAGCC
GGGCCAACGCTCCCCTGGCACAAGACCTGTACGCCGATGATGTAGGCGCC
ACGGGGCTCTTCCTCTCCTCGCCTATGGCCCGTTGTGTGACGGGCGTGAC
CATGTACGTTGACAACGGCCTGCACGCCATGGGGATGGCGCTTGACTCGG
TGGCGATGCAGCAGGAGTAAGGTCCTTCCCTCCTTCCGTCCCTCCTTCTT
TCCTTCCTCCCTTCCTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCTGTTC
CTCATGATGTTTGTGTCGGGTGTGCATGAGGGGTGTGGAGGCTCTTGACC
TGTGAAAGATGAATGCT
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Coding sequence (CDS) from alignment at scaffold_24:182916..184482-

>mRNA_8401 ID=mRNA_8401|Name=jgi.p|Nanoce1779_2|195140|organism=Nannochloropsis oceanica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_24:182916..184482- (Nannochloropsis oceanica)
ACCTTCATCGAGTACGCAATCGACTACAGCCGGGCCAACGCTCCCCTGGC
ACAAGACCTGTACGCCGATGATGTAGGCGCCACGGGGCTCTTCCTCTCCT
CGCCTATGGCCCGTTGTGTGACGGGCGTGACCATGTACGTTGACAACGGC
CTGCACGCCATGGGGATGGCGCTTGACTCGGTGGCGATGCAGCAGGAGTA
AGGCTACCTGACTGCCTCCTCGGCCTCGGCCTACTCTATGGTGTCTCTCG
TACAGCACTTCGCGCCCATCATGAACGAGGGCGGGTCGGTCCTCTCCCTC
ACCTACATCGCCTCGGAGAAGGTCATCCCGGGCTACGGCGGCGGCATGAG
CAGCGCCAAGGCCCAGCTGGAGTCGGACACGCGAGTGCTGGCCTTTGAGG
CGGGAAGGAAGTACAAGATCCGCGTCAACACCATCTCGGCGGGGCCCTTG
AAGAGCCGGGCGGCCAGCGCCATCGGGGGAGGGGAGAAGGGGAAGAAGGT
GGCCAAGGAAGTCGAGAAGGACTTCGATGATGTGCCTGAGGCCGTCAAGA
CCAACAAGCGCTACGCTGGCCTGGGCGGGTACACCATCTCTGAGACCTTC
ATCGAGTACGCAATCGACTACAGCCGGGCCAACGCTCCCCTGGCACAAGA
CCTGTACGCCGATGATGTAGGCGCCACGGGGCTCTTCCTCTCCTCGCCTA
TGGCCCGTTGTGTGACGGGCGTGACCATGTACGTTGACAACGGCCTGCAC
GCCATGGGGATGGCGCTTGACTCGGTGGCGATGCAGCAGGAGTAAGGCTA
CCTGACTGCCTCCTCGGCCTCGGCCTACTCTATGGTGTCTCTCGTACAGC
ACTTCGCGCCCATCATGAACGAGGGCGGGTCGGTCCTCTCCCTCACCTAC
ATCGCCTCGGAGAAGGTCATCCCGGGCTACGGCGGCGGCATGAGCAGCGC
CAAGGCCCAGCTGGAGTCGGACACGCGAGTGCTGGCCTTTGAGGCGGGAA
GGAAGTACAAGATCCGCGTCAACACCATCTCGGCGGGGCCCTTGAAGAGC
CGGGCGGCCAGCGCCATCGGGGGAGGGGAGAAGGGGAAGAAGGTGGCCAA
GGAAGTCGAGAAGGACTTCGATGATGTGCCTGAGGCCGTCAAGACCAACA
AGCGCTACGCTGGCCTGGGCGGGTACACCATCTCTGAGACCTTCATCGAG
TACGCAATCGACTACAGCCGGGCCAACGCTCCCCTGGCACAAGACCTGTA
CGCCGATGATGTAGGCGCCACGGGGCTCTTCCTCTCCTCGCCTATGGCCC
GTTGTGTGACGGGCGTGACCATGTACGTTGACAACGGCCTGCACGCCATG
GGGATGGCGCTTGACTCGGTGGCGATGCAGCAGGAGTAAGGCTACCTGAC
TGCCTCCTCGGCCTCGGCCTACTCTATGGTGTCTCTCGTACAGCACTTCG
CGCCCATCATGAACGAGGGCGGGTCGGTCCTCTCCCTCACCTACATCGCC
TCGGAGAAGGTCATCCCGGGCTACGGCGGCGGCATGAGCAGCGCCAAGGC
CCAGCTGGAGTCGGACACGCGAGTGCTGGCCTTTGAGGCGGGAAGGAAGT
ACAAGATCCGCGTCAACACCATCTCGGCGGGGCCCTTGAAGAGCCGGGCG
GCCAGCGCCATCGGGGGAGGGGAGAAGGGGAAGAAGGTGGCCAAGGAAGT
CGAGAAGGACTTCGATGATGTGCCTGAGGCCGTCAAGACCAACAAGCGCT
ACGCTGGCCTGGGCGGGTACACCATCTCTGAGACCTTCATCGAGTACGCA
ATCGACTACAGCCGGGCCAACGCTCCCCTGGCACAAGACCTGTACGCCGA
TGATGTAGGCGCCACGGGGCTCTTCCTCTCCTCGCCTATGGCCCGTTGTG
TGACGGGCGTGACCATGTACGTTGACAACGGCCTGCACGCCATGGGGATG
GCGCTTGACTCGGTGGCGATGCAGCAGGAGTAAGGCTACCTGACTGCCTC
CTCGGCCTCGGCCTACTCTATGGTGTCTCTCGTACAGCACTTCGCGCCCA
TCATGAACGAGGGCGGGTCGGTCCTCTCCCTCACCTACATCGCCTCGGAG
AAGGTCATCCCGGGCTACGGCGGCGGCATGAGCAGCGCCAAGGCCCAGCT
GGAGTCGGACACGCGAGTGCTGGCCTTTGAGGCGGGAAGGAAGTACAAGA
TCCGCGTCAACACCATCTCGGCGGGGCCCTTGAAGAGCCGGGCGGCCAGC
GCCATCGGGGGAGGGGAGAAGGGGAAGAAGGTGGCCAAGGAAGTCGAGAA
GGACTTCGATGATGTGCCTGAGGCCGTCAAGACCAACAAGCGCTACGCTG
GCCTGGGCGGGTACACCATCTCTGAG
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Synonyms
Publications