jgi.p|Nanoce1779_2|601895, mRNA_8400 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601895
Unique NamemRNA_8400
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length811
Alignment locationscaffold_24:182273..183083 -

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Properties
Property NameValue
TranscriptId601981
TrackFilteredModels2
ProteinId601895
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:182273..183083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601895gene_8400Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601895mRNA_8400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8400CDS_8400Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8400 ID=mRNA_8400|Name=jgi.p|Nanoce1779_2|601895|organism=Nannochloropsis oceanica|type=mRNA|length=811bp
GTGGCGATGCAGCAGGAGTAAGGTCCTTCCCTCCTTCCGTCCCTCCTTCT
TTCCTTCCTCCCTTCCTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCTGTT
CCTCATGATGTTTGTGTCGGGTGTGCATGAGGGGTGTGGAGGCTCTTGAC
CTGTGAAAGATGAATGCTGCAGCAGTATGGCTTGATCTCCCTAGGTCCCT
CCCTCCCTCCCCTTCTTCCTCTTTTTCCTCTTCGCTTCTTCTCCGACCGC
GATTTGGAGGGAGGACGAAGGGAAGAGGTGGAATTTATGGGGTTGACGTG
CGCTGTTATTCTCTATGTGCTATTTGTTGGGCTGTGTTCCTCTGGGCGTG
CCTGTCCCGGGGGAGACCGGAGGGGAAAAGGATGGGAGAGGGGGGGCGTA
TTGTATGGATGGAGCGTATTATATGTATGCACATACATACACATATATAT
GTGTGTGTGTGTGTGTCTCTCTGTCTTTGTGTGTGTAGTGATGTGTGGGT
GAGGGAAAGATATATATGGGGTCTAGTGCGTGTTAGTGTGTAAGTGTTGG
CGTTGGCGTGGATACATGGAGTGCGGGGCCTGAGTCCAGCCGAGACAGGA
GGCTTGGTGGAAGCTTTTGTATTGCGATTGGAAGGGGGAGTGAAGGAGGA
GGAAGAGAAGGGGAAGAGGTAGAAGGTGAGGATAGGAGACGAAGGAGGCG
AAGGAGGAGAAGATTAGAAGAAAAGAAGAGGAAGAAGAGAAGTTACCTCG
ATCTCGACGTTAGACTTATGTGAGTGAATCCCTCCATCGCCTTCTTTGAC
AGAGATGGCTC
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protein sequence of jgi.p|Nanoce1779_2|601895

>mRNA_8400-protein ID=mRNA_8400-protein|Name=jgi.p|Nanoce1779_2|601895|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MNAAAVWLDLPRSLPPSPSSSFSSSLLLRPRFGGRTKGRGGIYGVDVRCY
SLCAICWAVFLWACLSRGRPEGKRMGEGGRIVWMERIICMHIHTHIYVCV
CVSLCLCVCSDVWVRERYIWGLVRVSV*
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mRNA from alignment at scaffold_24:182273..183083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8400 ID=mRNA_8400|Name=jgi.p|Nanoce1779_2|601895|organism=Nannochloropsis oceanica|type=mRNA|length=811bp|location=Sequence derived from alignment at scaffold_24:182273..183083- (Nannochloropsis oceanica)
GTGGCGATGCAGCAGGAGTAAGGTCCTTCCCTCCTTCCGTCCCTCCTTCT
TTCCTTCCTCCCTTCCTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCTGTT
CCTCATGATGTTTGTGTCGGGTGTGCATGAGGGGTGTGGAGGCTCTTGAC
CTGTGAAAGATGAATGCTGCAGCAGTATGGCTTGATCTCCCTAGGTCCCT
CCCTCCCTCCCCTTCTTCCTCTTTTTCCTCTTCGCTTCTTCTCCGACCGC
GATTTGGAGGGAGGACGAAGGGAAGAGGTGGAATTTATGGGGTTGACGTG
CGCTGTTATTCTCTATGTGCTATTTGTTGGGCTGTGTTCCTCTGGGCGTG
CCTGTCCCGGGGGAGACCGGAGGGGAAAAGGATGGGAGAGGGGGGGCGTA
TTGTATGGATGGAGCGTATTATATGTATGCACATACATACACATATATAT
GTGTGTGTGTGTGTGTCTCTCTGTCTTTGTGTGTGTAGTGATGTGTGGGT
GAGGGAAAGATATATATGGGGTCTAGTGCGTGTTAGTGTGTAAGTGTTGG
CGTTGGCGTGGATACATGGAGTGCGGGGCCTGAGTCCAGCCGAGACAGGA
GGCTTGGTGGAAGCTTTTGTATTGCGATTGGAAGGGGGAGTGAAGGAGGA
GGAAGAGAAGGGGAAGAGGTAGAAGGTGAGGATAGGAGACGAAGGAGGCG
AAGGAGGAGAAGATTAGAAGAAAAGAAGAGGAAGAAGAGAAGTTACCTCG
ATCTCGACGTTAGACTTATGTGAGTGAATCCCTCCATCGCCTTCTTTGAC
AGAGATGGCTC
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Coding sequence (CDS) from alignment at scaffold_24:182273..183083-

>mRNA_8400 ID=mRNA_8400|Name=jgi.p|Nanoce1779_2|601895|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_24:182273..183083- (Nannochloropsis oceanica)
ATGAATGCTGCAGCAGTATGGCTTGATCTCCCTAGGTCCCTCCCTCCCTC
CCCTTCTTCCTCTTTTTCCTCTTCGCTTCTTCTCCGACCGCGATTTGGAG
GGAGGACGAAGGGAAGAGGTGGAATTTATGGGGTTGACGTGCGCTGTTAT
TCTCTATGTGCTATTTGTTGGGCTGTGTTCCTCTGGGCGTGCCTGTCCCG
GGGGAGACCGGAGGGGAAAAGGATGGGAGAGGGGGGGCGTATTGTATGGA
TGGAGCGTATTATATGTATGCACATACATACACATATATATGTGTGTGTG
TGTGTGTCTCTCTGTCTTTGTGTGTGTAGTGATGTGTGGGTGAGGGAAAG
ATATATATGGGGTCTAGTGCGTGTTAGTGTGTAA
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Synonyms
Publications