jgi.p|Nanoce1779_2|623957, mRNA_8399 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|623957
Unique Name	mRNA_8399
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	960
Alignment location	scaffold_24:180513..182133 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	624043
Track	FilteredModels2
ProteinId	623957

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:180513..182133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623957	gene_8399	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|623957	mRNA_8399-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8399	CDS_8399	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:180513..182133+
coding sequence from alignment at scaffold_24:180513..182133+

mRNA sequence

>mRNA_8399 ID=mRNA_8399|Name=jgi.p|Nanoce1779_2|623957|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ATGGATCTCAGCATTGGCGGTGTCCCTCAAGGCCGACTCGTCTTTCTCCT
CTACAATTTTGTCACGCCCAAGACGTGTGCCAATTTTCAAGCTCTCTGCA
CAGGAGAAAAAGGACTCTCTCCACTCTCAGGCAAGAAGCTGCATTACAAA
GGCTCCATCTTCCATCGCGTCATCCCCGGCTTCATGGCTCAAGGCGGCGA
CTTCACCAACGCCGACGGCACGGGCGGAGAGAGCATCTACGGCCCTACCT
TCCCGGACGAAAACTTCCGCATTCCTCACAACAAGCCGGGCCTCCTCTCC
ATGGCCAACGCCGGGCCTCACACCAACGGCAGCCAGTTCTTCCTCACGTT
CAAGCCCACCCCGCACCTCAACGGCGTACATGTCGTCTTTGGCGGCAGCT
CACAGGAGAGATACAATAAAGGGGGCCAGGGCGGGAAGAGTGTGGATGTT
ATAAAGAGACTCGGGGCCGTGGAGACGAATGGCACGGACAGCCCTTTATT
TACTCACAAGGTGGTGGTGACAGATTGCGGGGCTTGGGAGGAGAGAGGGA
GGGAAGGAGGAAGGGACAAGAATAAGAAGAAGAAGGAGAAGAATAGGAAG
AAGATGAAAAAGAAGAGGAAAAGGGAGGAGAGTGATAGTGAGGAGAGTAG
TAGCAGCAGTGGTAGCAGCAGCAGCAGCAGCAGCAGCTCGTCAGAGGACG
AGGAAGAGGGGGAGAGGAGGAGCAAGAAAAGGAAGGCGGAGAAGAAGAGG
GAGGAGAAGGAGAAGAAGAGGGAAAAAAAGGAGAAGAAGAGGAGGGAGAA
AAAGGAGAATAAGAAGAGGGAGAAAAAGGAGAATGAGAAGAGGGAGAAAA
AGGAGAATGAGAAGAGAGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAG
GAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAGCAGCAGCGCAT
GGGGGAATAG

protein sequence of jgi.p|Nanoce1779_2|623957

>mRNA_8399-protein ID=mRNA_8399-protein|Name=jgi.p|Nanoce1779_2|623957|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MDLSIGGVPQGRLVFLLYNFVTPKTCANFQALCTGEKGLSPLSGKKLHYK
GSIFHRVIPGFMAQGGDFTNADGTGGESIYGPTFPDENFRIPHNKPGLLS
MANAGPHTNGSQFFLTFKPTPHLNGVHVVFGGSSQERYNKGGQGGKSVDV
IKRLGAVETNGTDSPLFTHKVVVTDCGAWEERGREGGRDKNKKKKEKNRK
KMKKKRKREESDSEESSSSSGSSSSSSSSSSEDEEEGERRSKKRKAEKKR
EEKEKKREKKEKKRREKKENKKREKKENEKREKKENEKREKKENEKREKK
EKKENEKREKKEKQQRMGE*

mRNA from alignment at scaffold_24:180513..182133+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8399 ID=mRNA_8399|Name=jgi.p|Nanoce1779_2|623957|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp|location=Sequence derived from alignment at scaffold_24:180513..182133+ (Nannochloropsis oceanica)
ATGGATCTCAGCATTGGCGGTGTCCCTCAAGGCCGACTCGTCTTTCTCCT
CTACAATTTTGTCACGCCCAAGACGTGTGCCAATTTTCAAGCTCTCTGCA
CAGGAGAAAAAGGACTCTCTCCACTCTCAGGTAGGTACTCATTGACCAAT
TTATTTAAACTTTAGGTTGGGGTGGGGTGTACCAGCGTGTGTCACTAGCT
TTGACATCAGCTGTCGCCTTCGTCAGCTCAGTATGGGAGGGAGGGAGGGA
AGGAGGGAAGGAGAGGCGGAGTGCACGAGGTATTCCAGAGACTGACTCAA
ACCTAAAGCTTTAAGTGAATCGTCAAATAAGAACCTAAGTGCACTTCACA
GGCTCTGTTTTCCACAGGGCCGTTCCCGGAATTTGGGGCGCAGGAGTCTG
TTCATTAAACTTTTTCAAATTTACTTTATTCTCCATTATATACATTTTGG
ATTATTAATTTTATTCATTTATCCACCAACTTGAACCCATTACTTGGTTT
GCACAGGCAAGAAGCTGCATTACAAAGGCTCCATCTTCCATCGCGTCATC
CCCGGCTTCATGGCTCAAGGCGGCGACTTCACCAACGCCGACGGCACGGG
CGGAGAGAGCATCTACGGGTAAGCACAACCACACCCGTCCCTCCCTCCCT
CCCTCTCTCAATTCCTCCCTCACTCTAGGTTAACAAGAGCATTCGATACT
CCCACAGTAAAGCTTACCTCCTCCCAAAGGCCAACGCCGGCCTCTATCCC
CATGGCTTCCACTTCTTCCTCACATACCCTCCCCCCCTCCCCCCCTCCCT
CCCTCCCTCCCCCCCTCTCTCCCTCCTACCCGCCCTCCCTTCTTACAAGC
CCTACCTTCCCGGACGAAAACTTCCGCATTCCTCACAACAAGCCGGGCCT
CCTCTCCATGGCCAACGCCGGGCCTCACACCAACGGCAGCCAGTTCTTCC
TCACGTTCAAGCCCACCCCGCACCTCAACGGCGTACATGTCGTCTTTGGT
GAGCTCCTTCACACCCACCCACCCCTTGGACGGAAAGAGGGCTCCCAGAA
AGGCGGCAGCTCACAGGAGAGATACAATAAAGGGGGCCAGGGCGGGAAGA
GTGTGGATGTTATAAAGAGACTCGGGGCCGTGGAGACGAATGGCACGGAC
AGCCCTTTATTTACTCACAAGGTGGTGGTGACAGATTGCGGGGCTTGGGA
GGAGAGAGGGAGGGAAGGAGGAAGGGACAAGAATAAGAAGAAGAAGGAGA
AGAATAGGAAGAAGATGAAAAAGAAGAGGAAAAGGGAGGAGAGTGATAGT
GAGGAGAGTAGTAGCAGCAGTGGTAGCAGCAGCAGCAGCAGCAGCAGCTC
GTCAGAGGACGAGGAAGAGGGGGAGAGGAGGAGCAAGAAAAGGAAGGCGG
AGAAGAAGAGGGAGGAGAAGGAGAAGAAGAGGGAAAAAAAGGAGAAGAAG
AGGAGGGAGAAAAAGGAGAATAAGAAGAGGGAGAAAAAGGAGAATGAGAA
GAGGGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAATGAGAAGA
GAGAGAAAAAGGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAG
CAGCAGCGCATGGGGGAATAG

Coding sequence (CDS) from alignment at scaffold_24:180513..182133+

>mRNA_8399 ID=mRNA_8399|Name=jgi.p|Nanoce1779_2|623957|organism=Nannochloropsis oceanica|type=CDS|length=3840bp|location=Sequence derived from alignment at scaffold_24:180513..182133+ (Nannochloropsis oceanica)
ATGGATCTCAGCATTGGCGGTGTCCCTCAAGGCCGACTCGTCTTTCTCCT
CTACAATTTTGTCACGCCCAAGACGTGTGCCAATTTTCAAGCTCTCTGCA
CAGGAGAAAAAGGACTCTCTCCACTCTCAGGCAAGAAGCTGCATTACAAA
GGCTCCATCTTCCATCGCGTCATCCCCGGCTTCATGGCTCAAGGCGGCGA
CTTCACCAACGCCGACGGCACGGGCGGAGAGAGCATCTACGGCCCTACCT
TCCCGGACGAAAACTTCCGCATTCCTCACAACAAGCCGGGCCTCCTCTCC
ATGGCCAACGCCGGGCCTCACACCAACGGCAGCCAGTTCTTCCTCACGTT
CAAGCCCACCCCGCACCTCAACGGCGTACATGTCGTCTTTGGCGGCAGCT
CACAGGAGAGATACAATAAAGGGGGCCAGGGCGGGAAGAGTGTGGATGTT
ATAAAGAGACTCGGGGCCGTGGAGACGAATGGCACGGACAGCCCTTTATT
TACTCACAAGGTGGTGGTGACAGATTGCGGGGCTTGGGAGGAGAGAGGGA
GGGAAGGAGGAAGGGACAAGAATAAGAAGAAGAAGGAGAAGAATAGGAAG
AAGATGAAAAAGAAGAGGAAAAGGGAGGAGAGTGATAGTGAGGAGAGTAG
TAGCAGCAGTGGTAGCAGCAGCAGCAGCAGCAGCAGCTCGTCAGAGGACG
AGGAAGAGGGGGAGAGGAGGAGCAAGAAAAGGAAGGCGGAGAAGAAGAGG
GAGGAGAAGGAGAAGAAGAGGGAAAAAAAGGAGAAGAAGAGGAGGGAGAA
AAAGGAGAATAAGAAGAGGGAGAAAAAGGAGAATGAGAAGAGGGAGAAAA
AGGAGAATGAGAAGAGAGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAG
GAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAGCAGCAGCGCAT
GGGGGAATAGATGGATCTCAGCATTGGCGGTGTCCCTCAAGGCCGACTCG
TCTTTCTCCTCTACAATTTTGTCACGCCCAAGACGTGTGCCAATTTTCAA
GCTCTCTGCACAGGAGAAAAAGGACTCTCTCCACTCTCAGGCAAGAAGCT
GCATTACAAAGGCTCCATCTTCCATCGCGTCATCCCCGGCTTCATGGCTC
AAGGCGGCGACTTCACCAACGCCGACGGCACGGGCGGAGAGAGCATCTAC
GGCCCTACCTTCCCGGACGAAAACTTCCGCATTCCTCACAACAAGCCGGG
CCTCCTCTCCATGGCCAACGCCGGGCCTCACACCAACGGCAGCCAGTTCT
TCCTCACGTTCAAGCCCACCCCGCACCTCAACGGCGTACATGTCGTCTTT
GGCGGCAGCTCACAGGAGAGATACAATAAAGGGGGCCAGGGCGGGAAGAG
TGTGGATGTTATAAAGAGACTCGGGGCCGTGGAGACGAATGGCACGGACA
GCCCTTTATTTACTCACAAGGTGGTGGTGACAGATTGCGGGGCTTGGGAG
GAGAGAGGGAGGGAAGGAGGAAGGGACAAGAATAAGAAGAAGAAGGAGAA
GAATAGGAAGAAGATGAAAAAGAAGAGGAAAAGGGAGGAGAGTGATAGTG
AGGAGAGTAGTAGCAGCAGTGGTAGCAGCAGCAGCAGCAGCAGCAGCTCG
TCAGAGGACGAGGAAGAGGGGGAGAGGAGGAGCAAGAAAAGGAAGGCGGA
GAAGAAGAGGGAGGAGAAGGAGAAGAAGAGGGAAAAAAAGGAGAAGAAGA
GGAGGGAGAAAAAGGAGAATAAGAAGAGGGAGAAAAAGGAGAATGAGAAG
AGGGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAATGAGAAGAG
AGAGAAAAAGGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAGC
AGCAGCGCATGGGGGAATAGATGGATCTCAGCATTGGCGGTGTCCCTCAA
GGCCGACTCGTCTTTCTCCTCTACAATTTTGTCACGCCCAAGACGTGTGC
CAATTTTCAAGCTCTCTGCACAGGAGAAAAAGGACTCTCTCCACTCTCAG
GCAAGAAGCTGCATTACAAAGGCTCCATCTTCCATCGCGTCATCCCCGGC
TTCATGGCTCAAGGCGGCGACTTCACCAACGCCGACGGCACGGGCGGAGA
GAGCATCTACGGCCCTACCTTCCCGGACGAAAACTTCCGCATTCCTCACA
ACAAGCCGGGCCTCCTCTCCATGGCCAACGCCGGGCCTCACACCAACGGC
AGCCAGTTCTTCCTCACGTTCAAGCCCACCCCGCACCTCAACGGCGTACA
TGTCGTCTTTGGCGGCAGCTCACAGGAGAGATACAATAAAGGGGGCCAGG
GCGGGAAGAGTGTGGATGTTATAAAGAGACTCGGGGCCGTGGAGACGAAT
GGCACGGACAGCCCTTTATTTACTCACAAGGTGGTGGTGACAGATTGCGG
GGCTTGGGAGGAGAGAGGGAGGGAAGGAGGAAGGGACAAGAATAAGAAGA
AGAAGGAGAAGAATAGGAAGAAGATGAAAAAGAAGAGGAAAAGGGAGGAG
AGTGATAGTGAGGAGAGTAGTAGCAGCAGTGGTAGCAGCAGCAGCAGCAG
CAGCAGCTCGTCAGAGGACGAGGAAGAGGGGGAGAGGAGGAGCAAGAAAA
GGAAGGCGGAGAAGAAGAGGGAGGAGAAGGAGAAGAAGAGGGAAAAAAAG
GAGAAGAAGAGGAGGGAGAAAAAGGAGAATAAGAAGAGGGAGAAAAAGGA
GAATGAGAAGAGGGAGAAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGA
ATGAGAAGAGAGAGAAAAAGGAGAAAAAGGAGAATGAGAAGAGAGAGAAA
AAGGAGAAGCAGCAGCGCATGGGGGAATAGATGGATCTCAGCATTGGCGG
TGTCCCTCAAGGCCGACTCGTCTTTCTCCTCTACAATTTTGTCACGCCCA
AGACGTGTGCCAATTTTCAAGCTCTCTGCACAGGAGAAAAAGGACTCTCT
CCACTCTCAGGCAAGAAGCTGCATTACAAAGGCTCCATCTTCCATCGCGT
CATCCCCGGCTTCATGGCTCAAGGCGGCGACTTCACCAACGCCGACGGCA
CGGGCGGAGAGAGCATCTACGGCCCTACCTTCCCGGACGAAAACTTCCGC
ATTCCTCACAACAAGCCGGGCCTCCTCTCCATGGCCAACGCCGGGCCTCA
CACCAACGGCAGCCAGTTCTTCCTCACGTTCAAGCCCACCCCGCACCTCA
ACGGCGTACATGTCGTCTTTGGCGGCAGCTCACAGGAGAGATACAATAAA
GGGGGCCAGGGCGGGAAGAGTGTGGATGTTATAAAGAGACTCGGGGCCGT
GGAGACGAATGGCACGGACAGCCCTTTATTTACTCACAAGGTGGTGGTGA
CAGATTGCGGGGCTTGGGAGGAGAGAGGGAGGGAAGGAGGAAGGGACAAG
AATAAGAAGAAGAAGGAGAAGAATAGGAAGAAGATGAAAAAGAAGAGGAA
AAGGGAGGAGAGTGATAGTGAGGAGAGTAGTAGCAGCAGTGGTAGCAGCA
GCAGCAGCAGCAGCAGCTCGTCAGAGGACGAGGAAGAGGGGGAGAGGAGG
AGCAAGAAAAGGAAGGCGGAGAAGAAGAGGGAGGAGAAGGAGAAGAAGAG
GGAAAAAAAGGAGAAGAAGAGGAGGGAGAAAAAGGAGAATAAGAAGAGGG
AGAAAAAGGAGAATGAGAAGAGGGAGAAAAAGGAGAATGAGAAGAGAGAG
AAAAAGGAGAATGAGAAGAGAGAGAAAAAGGAGAAAAAGGAGAATGAGAA
GAGAGAGAAAAAGGAGAAGCAGCAGCGCATGGGGGAATAG

Synonyms

Publications