jgi.p|Nanoce1779_2|632801, mRNA_8398 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632801
Unique Name	mRNA_8398
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1320
Alignment location	scaffold_24:172033..174062 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632887
Track	FilteredModels2
ProteinId	632801

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:172033..174062 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632801	gene_8398	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632801	mRNA_8398-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8398	CDS_8398	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:172033..174062+
coding sequence from alignment at scaffold_24:172033..174062+

mRNA sequence

>mRNA_8398 ID=mRNA_8398|Name=jgi.p|Nanoce1779_2|632801|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ATGGAGTTATCAATGCATGTGCGTGAGGGAGGGAGGGAGGGCGGGAGGGA
GGACGGGGCTGAAGCCTTGGAGCTCCTCTCCTTGCTTTTGACACGGCACA
AATGCACGCTTCCTGAGGGTGGGAAGGATGGCGGGGGGGAAGGAGGGGGA
GGGGGGACAGAACAATTGTTGCTGTTGCTGCTGCCGGAGGAGGAAGTGCA
ATTGCGGTTCATCCAGTGGCTGCAGCAGTCGGCGAGCGAGGAGGATCTGA
GAGAGAGAATAGAGCGACAGAGGGCGAGGAGGGAGGGAGGGAGGGAGGGC
GGGCTGGAGGGAGGGAAGGAGGAAGGAGGCGTTCTGGATCCGTTGGGGTT
GAATAAAATCAATGTTAATTTTGAGTGGCAAGGGTCTTCGGAGCAACAGC
AGGCAAGACCTGAGGGAGGGAGGGAGGGAGGGAGGGCCGGGATGGTGGGG
ACGAAGGAACAGATATTTTTGTTGCAGAAATTGCAGCTGGCTACCGTGGG
AGGGGAAGGGGGGGAGGGAGGAAGGGAAGGAGGGAGGAAGCAGGGGGGCC
GTGGCGGGGGGAAGTACACGAGGAACCGGAGTCGGGCTTTGAAGGCGACG
AAAGCAGGAGGGAGGGATGGAGGGAGGGAGGGAGGAGGAGGGGCTTCATC
GATCGTGCCGCAGGACGAGGGTTTCGACCCCCTTTTGTTCCTGTCGGTCG
TCCACGGAGGGAGCAGCTGGGAGGAGGTGGTGAAGGGTCAGGGGTATCTA
GAGAGGTCCCTGGGCACACAGGCCTCGGCGCTGCAGCAGCTAGTGAGGGA
TCACTACGAAGCTTTCGTCCGGTGCGCCGACGGCATCCACTGGCTCAAGG
ACATGGTGGCCTCGCAGCAGTTTCTCAGCCTTGCATGCACCCATGGGCGA
GGGCGGGAGGGAGGGCGAGAAGGAGGCAGCGGTACTACTGACCCTGCCCC
CCACCCCTCCTCCTCCTCCTCAAACGGCAACAGCAGCAGCAGCAGCACAC
TAGATCCCATGTTGAAGATGACGCATGCCACGAGGGAAGAAGCCACACGC
CTCTTCCTCCCCCTCCTCCTCGCCTTAGAGCGACAGAAACGGACGAGGGC
CCGCAGAGTCCTCCTTCAGAGGCTCGCCAAAGTCCTCGACGTCCCTGCAC
GTATGAAGCTAAACGAGCAACGAGGGAACTACCAGGAGGTCGTCCGGGAG
TACCAAAGGGTGCGTGCCCTCCCTCCCTCCCGCCCTCGCCCTCGTCCTCG
TTCCCCGTCCTCCTCCCCGTCCTCCTCCCCGTCCTCCTCCCCCTCCTCGG
GCGGCAACAGGAGCAGGGAG

protein sequence of jgi.p|Nanoce1779_2|632801

>mRNA_8398-protein ID=mRNA_8398-protein|Name=jgi.p|Nanoce1779_2|632801|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MELSMHVREGGREGGREDGAEALELLSLLLTRHKCTLPEGGKDGGGEGGG
GGTEQLLLLLLPEEEVQLRFIQWLQQSASEEDLRERIERQRARREGGREG
GLEGGKEEGGVLDPLGLNKINVNFEWQGSSEQQQARPEGGREGGRAGMVG
TKEQIFLLQKLQLATVGGEGGEGGREGGRKQGGRGGGKYTRNRSRALKAT
KAGGRDGGREGGGGASSIVPQDEGFDPLLFLSVVHGGSSWEEVVKGQGYL
ERSLGTQASALQQLVRDHYEAFVRCADGIHWLKDMVASQQFLSLACTHGR
GREGGREGGSGTTDPAPHPSSSSSNGNSSSSSTLDPMLKMTHATREEATR
LFLPLLLALERQKRTRARRVLLQRLAKVLDVPARMKLNEQRGNYQEVVRE
YQRVRALPPSRPRPRPRSPSSSPSSSPSSSPSSGGNRSRE

mRNA from alignment at scaffold_24:172033..174062+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8398 ID=mRNA_8398|Name=jgi.p|Nanoce1779_2|632801|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_24:172033..174062+ (Nannochloropsis oceanica)
ATGGAGTTATCAATGCATGTGCGTGAGGGAGGGAGGGAGGGCGGGAGGGA
GGACGGGGCTGAAGCCTTGGAGCTCCTCTCCTTGCTTTTGACACGGCACA
AATGCACGCTTCCTGAGGGTGGGAAGGATGGCGGGGGGGAAGGAGGGGGA
GGGGGGACAGAACAATTGTTGCTGTTGCTGCTGCCGGAGGAGGAAGTGCA
ATTGCGGTTCATCCAGTGGCTGCAGCAGTCGGCGAGCGAGGAGGATCTGA
GAGAGAGAATAGAGCGACAGAGGGCGAGGAGGGAGGGAGGGAGGGAGGGC
GGGCTGGAGGGAGGGAAGGAGGAAGGAGGCGTTCTGGATCCGTTGGGGTT
GAATAAAATCAATGTTAATTTTGAGTGGCAAGGGTCTTCGGAGCAACAGC
AGGCAAGACCTGAGGGAGGGAGGGAGGGAGGGAGGGCCGGGATGGTGGGG
ACGAAGGAACAGATATTTTTGTTGCAGAAATTGCAGCTGGCTACCGTGGG
AGGGGAAGGGGGGGAGGGAGGAAGGGAAGGAGGGAGGAAGCAGGGGGGCC
GTGGCGGGGGGAAGTACACGAGGAACCGGAGTCGGGCTTTGAAGGCGACG
AAAGCAGGAGGGAGGGATGGAGGGAGGGAGGGAGGAGGAGGGGCTTCATC
GATCGTGCCGCAGGACGAGGGTTTCGACCCCCTTTTGTTCCTGTCGGTCG
TCCACGGAGGGAGCAGCTGGGAGGAGGTGGTGAAGGGTCAGGGGTATCTA
GGTGAGTCTCATTTCCCTTGATCTGTTTATGTACATATTTATAATTGTGA
TTGGTTATATTTATGTATATATTTGTTCATTCGTTTGTTGATCACTTGAT
TAACCGTTGATTGAGTAAATTGAGCAATTGTATGTACATATCTATATATC
TATATCTATATATCTATATATCTATATCTATATATCTATATATCTACATC
TATATCTATATATTTATATCTATATCTATATCTATCTATATGTGTGTAAA
CCTAAGCCAATGGATCCGGTCGCTCGTCCATTCATTGCTTTCCATTCATT
GCCTTCCCCCACCCCACAGAGAGGTCCCTGGGCACACAGGCCTCGGCGCT
GCAGCAGCTAGTGAGGGATCACTACGAAGCTTTCGTCCGGTGCGCCGACG
GCATCCACTGGCTCAAGGACATGGTGGCCTCGCAGCAGTTTCTCAGCCTT
GCATGCACCCATGGGCGAGGGCGGGAGGGAGGGCGAGAAGGAGGCAGCGG
TACTACTGACCCTGCCCCCCACCCCTCCTCCTCCTCCTCAAACGGCAACA
GCAGCAGCAGCAGCACACTAGATCCCATGTTGAAGATGACGCATGCCACG
AGGGAAGAAGCCACACGCCTCTTCCTCCCCCTCCTCCTCGCCTTAGAGCG
ACAGAAACGGACGAGGGCCCGCAGAGTCCTCCTTCAGAGGCTCGCCAAAG
GTGAAGAAGGGGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGA
GGGAGGGTGGGGGGCAAGCATATGTGATGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAAAAACC
TGCACACAAAACCCTCGCCCACTCCTCCCCACCTTCCCTCCCTCTCTCTC
CTCCCTCTCCTCCTCCTCCCTCCCTAGCCTTGGGCGAAAGAGAAAACCAC
TGAGACACCATCCCACCTTTCCCTTCCTTCCTCCCTTCCTCCCTCCGTCT
ATCTCCCCCACTTCCAACCCCCCTCCCTCCCTCCCCCCTTAGTCCTCGAC
GTCCCTGCACGTATGAAGCTAAACGAGCAACGAGGGAACTACCAGGAGGT
CGTCCGGGAGTACCAAAGGGTGCGTGCCCTCCCTCCCTCCCGCCCTCGCC
CTCGTCCTCGTTCCCCGTCCTCCTCCCCGTCCTCCTCCCCGTCCTCCTCC
CCCTCCTCGGGCGGCAACAGGAGCAGGGAG

Coding sequence (CDS) from alignment at scaffold_24:172033..174062+

>mRNA_8398 ID=mRNA_8398|Name=jgi.p|Nanoce1779_2|632801|organism=Nannochloropsis oceanica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_24:172033..174062+ (Nannochloropsis oceanica)
ATGGAGTTATCAATGCATGTGCGTGAGGGAGGGAGGGAGGGCGGGAGGGA
GGACGGGGCTGAAGCCTTGGAGCTCCTCTCCTTGCTTTTGACACGGCACA
AATGCACGCTTCCTGAGGGTGGGAAGGATGGCGGGGGGGAAGGAGGGGGA
GGGGGGACAGAACAATTGTTGCTGTTGCTGCTGCCGGAGGAGGAAGTGCA
ATTGCGGTTCATCCAGTGGCTGCAGCAGTCGGCGAGCGAGGAGGATCTGA
GAGAGAGAATAGAGCGACAGAGGGCGAGGAGGGAGGGAGGGAGGGAGGGC
GGGCTGGAGGGAGGGAAGGAGGAAGGAGGCGTTCTGGATCCGTTGGGGTT
GAATAAAATCAATGTTAATTTTGAGTGGCAAGGGTCTTCGGAGCAACAGC
AGGCAAGACCTGAGGGAGGGAGGGAGGGAGGGAGGGCCGGGATGGTGGGG
ACGAAGGAACAGATATTTTTGTTGCAGAAATTGCAGCTGGCTACCGTGGG
AGGGGAAGGGGGGGAGGGAGGAAGGGAAGGAGGGAGGAAGCAGGGGGGCC
GTGGCGGGGGGAAGTACACGAGGAACCGGAGTCGGGCTTTGAAGGCGACG
AAAGCAGGAGGGAGGGATGGAGGGAGGGAGGGAGGAGGAGGGGCTTCATC
GATCGTGCCGCAGGACGAGGGTTTCGACCCCCTTTTGTTCCTGTCGGTCG
TCCACGGAGGGAGCAGCTGGGAGGAGGTGGTGAAGGGTCAGGGGTATCTA
GAGAGGTCCCTGGGCACACAGGCCTCGGCGCTGCAGCAGCTAGTGAGGGA
TCACTACGAAGCTTTCGTCCGGTGCGCCGACGGCATCCACTGGCTCAAGG
ACATGGTGGCCTCGCAGCAGTTTCTCAGCCTTGCATGCACCCATGGGCGA
GGGCGGGAGGGAGGGCGAGAAGGAGGCAGCGGTACTACTGACCCTGCCCC
CCACCCCTCCTCCTCCTCCTCAAACGGCAACAGCAGCAGCAGCAGCACAC
TAGATCCCATGTTGAAGATGACGCATGCCACGAGGGAAGAAGCCACACGC
CTCTTCCTCCCCCTCCTCCTCGCCTTAGAGCGACAGAAACGGACGAGGGC
CCGCAGAGTCCTCCTTCAGAGGCTCGCCAAAGTCCTCGACGTCCCTGCAC
GTATGAAGCTAAACGAGCAACGAGGGAACTACCAGGAGGTCGTCCGGGAG
TACCAAAGGGTGCGTGCCCTCCCTCCCTCCCGCCCTCGCCCTCGTCCTCG
TTCCCCGTCCTCCTCCCCGTCCTCCTCCCCGTCCTCCTCCCCCTCCTCGG
GCGGCAACAGGAGCAGGGAGATGGAGTTATCAATGCATGTGCGTGAGGGA
GGGAGGGAGGGCGGGAGGGAGGACGGGGCTGAAGCCTTGGAGCTCCTCTC
CTTGCTTTTGACACGGCACAAATGCACGCTTCCTGAGGGTGGGAAGGATG
GCGGGGGGGAAGGAGGGGGAGGGGGGACAGAACAATTGTTGCTGTTGCTG
CTGCCGGAGGAGGAAGTGCAATTGCGGTTCATCCAGTGGCTGCAGCAGTC
GGCGAGCGAGGAGGATCTGAGAGAGAGAATAGAGCGACAGAGGGCGAGGA
GGGAGGGAGGGAGGGAGGGCGGGCTGGAGGGAGGGAAGGAGGAAGGAGGC
GTTCTGGATCCGTTGGGGTTGAATAAAATCAATGTTAATTTTGAGTGGCA
AGGGTCTTCGGAGCAACAGCAGGCAAGACCTGAGGGAGGGAGGGAGGGAG
GGAGGGCCGGGATGGTGGGGACGAAGGAACAGATATTTTTGTTGCAGAAA
TTGCAGCTGGCTACCGTGGGAGGGGAAGGGGGGGAGGGAGGAAGGGAAGG
AGGGAGGAAGCAGGGGGGCCGTGGCGGGGGGAAGTACACGAGGAACCGGA
GTCGGGCTTTGAAGGCGACGAAAGCAGGAGGGAGGGATGGAGGGAGGGAG
GGAGGAGGAGGGGCTTCATCGATCGTGCCGCAGGACGAGGGTTTCGACCC
CCTTTTGTTCCTGTCGGTCGTCCACGGAGGGAGCAGCTGGGAGGAGGTGG
TGAAGGGTCAGGGGTATCTAGAGAGGTCCCTGGGCACACAGGCCTCGGCG
CTGCAGCAGCTAGTGAGGGATCACTACGAAGCTTTCGTCCGGTGCGCCGA
CGGCATCCACTGGCTCAAGGACATGGTGGCCTCGCAGCAGTTTCTCAGCC
TTGCATGCACCCATGGGCGAGGGCGGGAGGGAGGGCGAGAAGGAGGCAGC
GGTACTACTGACCCTGCCCCCCACCCCTCCTCCTCCTCCTCAAACGGCAA
CAGCAGCAGCAGCAGCACACTAGATCCCATGTTGAAGATGACGCATGCCA
CGAGGGAAGAAGCCACACGCCTCTTCCTCCCCCTCCTCCTCGCCTTAGAG
CGACAGAAACGGACGAGGGCCCGCAGAGTCCTCCTTCAGAGGCTCGCCAA
AGTCCTCGACGTCCCTGCACGTATGAAGCTAAACGAGCAACGAGGGAACT
ACCAGGAGGTCGTCCGGGAGTACCAAAGGGTGCGTGCCCTCCCTCCCTCC
CGCCCTCGCCCTCGTCCTCGTTCCCCGTCCTCCTCCCCGTCCTCCTCCCC
GTCCTCCTCCCCCTCCTCGGGCGGCAACAGGAGCAGGGAGATGGAGTTAT
CAATGCATGTGCGTGAGGGAGGGAGGGAGGGCGGGAGGGAGGACGGGGCT
GAAGCCTTGGAGCTCCTCTCCTTGCTTTTGACACGGCACAAATGCACGCT
TCCTGAGGGTGGGAAGGATGGCGGGGGGGAAGGAGGGGGAGGGGGGACAG
AACAATTGTTGCTGTTGCTGCTGCCGGAGGAGGAAGTGCAATTGCGGTTC
ATCCAGTGGCTGCAGCAGTCGGCGAGCGAGGAGGATCTGAGAGAGAGAAT
AGAGCGACAGAGGGCGAGGAGGGAGGGAGGGAGGGAGGGCGGGCTGGAGG
GAGGGAAGGAGGAAGGAGGCGTTCTGGATCCGTTGGGGTTGAATAAAATC
AATGTTAATTTTGAGTGGCAAGGGTCTTCGGAGCAACAGCAGGCAAGACC
TGAGGGAGGGAGGGAGGGAGGGAGGGCCGGGATGGTGGGGACGAAGGAAC
AGATATTTTTGTTGCAGAAATTGCAGCTGGCTACCGTGGGAGGGGAAGGG
GGGGAGGGAGGAAGGGAAGGAGGGAGGAAGCAGGGGGGCCGTGGCGGGGG
GAAGTACACGAGGAACCGGAGTCGGGCTTTGAAGGCGACGAAAGCAGGAG
GGAGGGATGGAGGGAGGGAGGGAGGAGGAGGGGCTTCATCGATCGTGCCG
CAGGACGAGGGTTTCGACCCCCTTTTGTTCCTGTCGGTCGTCCACGGAGG
GAGCAGCTGGGAGGAGGTGGTGAAGGGTCAGGGGTATCTAGAGAGGTCCC
TGGGCACACAGGCCTCGGCGCTGCAGCAGCTAGTGAGGGATCACTACGAA
GCTTTCGTCCGGTGCGCCGACGGCATCCACTGGCTCAAGGACATGGTGGC
CTCGCAGCAGTTTCTCAGCCTTGCATGCACCCATGGGCGAGGGCGGGAGG
GAGGGCGAGAAGGAGGCAGCGGTACTACTGACCCTGCCCCCCACCCCTCC
TCCTCCTCCTCAAACGGCAACAGCAGCAGCAGCAGCACACTAGATCCCAT
GTTGAAGATGACGCATGCCACGAGGGAAGAAGCCACACGCCTCTTCCTCC
CCCTCCTCCTCGCCTTAGAGCGACAGAAACGGACGAGGGCCCGCAGAGTC
CTCCTTCAGAGGCTCGCCAAAGTCCTCGACGTCCCTGCACGTATGAAGCT
AAACGAGCAACGAGGGAACTACCAGGAGGTCGTCCGGGAGTACCAAAGGG
TGCGTGCCCTCCCTCCCTCCCGCCCTCGCCCTCGTCCTCGTTCCCCGTCC
TCCTCCCCGTCCTCCTCCCCGTCCTCCTCCCCCTCCTCGGGCGGCAACAG
GAGCAGGGAG

Synonyms

Publications