jgi.p|Nanoce1779_2|195044, mRNA_8395 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|195044
Unique NamemRNA_8395
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length812
Alignment locationscaffold_24:166005..166936 -

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Properties
Property NameValue
TranscriptId195130
TrackFilteredModels2
ProteinId195044
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:166005..166936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195044gene_8395Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|195044mRNA_8395-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8395CDS_8395Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8395 ID=mRNA_8395|Name=jgi.p|Nanoce1779_2|195044|organism=Nannochloropsis oceanica|type=mRNA|length=812bp
TAATAAAACATATCCCCTTCTTGAGAGACTCGCCATTATGATCGTAATAC
ACAAAGGGGGGGGCTCGGCTACTACTCTTAAACTGAATTTCGTGAATTTC
TTCCATGTTTCCCTTCCTCCCCTCCATGCACACACTCACCCTCTACCTCC
AATCGTCCTTTTCCATGCACCCCCAGGCGCGTCAATCGGCCATCACCAAC
GAGATTTGCGAGATCGTGGCCGGTGCCTCCAGCGTCGGGGGGGGAGACGG
AAATGCCAAGGACTTGTTGGCGTTTGAATACGAGAACGGGGATGAATTCG
AGGGGGAGCGCATCAGGGAGTTCGCGGACTGGTTCAAGGATTTGGACGAG
TACAAGGAGGGTTTGTTGGAGGACGCATTGTATGTGTGTGCGTGTGAATG
TACGTGTGTCGTATCTTTGCGATGGTTCGAAGGCACCAAATGGTTTTGTG
AGTGCCTCTCCTCTGGATGGGGAGGGGGCAGGAGGGAGGGAGGGAGGGAG
GGAGGGAATTTGAAGGATGGTCCATCAGTGCTTTCGTGTGTGTTGAGCCA
AGAACACACACACGTGGATGGACAGTCACGCCCTCACGCCCTCCCTCCCT
GCCTACCTGCCGGTCCTCGGGCAGCGCATTTCCCCCTAAGGTATCTAATA
CAGTACTAACTATTTTATTTCCCTCTTACCTTCGTCATTCCTGCGCAGTG
AGTCCTTAGTCAGAAAACAAGCACAGGATCAATCATATCTTTAAGAGGGA
GGGAGAGAGGGAAGAGGGTGGGATGGAGTAGAGGGTGCGAGGACCTTGCC
TTCTTATTTCTT
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protein sequence of jgi.p|Nanoce1779_2|195044

>mRNA_8395-protein ID=mRNA_8395-protein|Name=jgi.p|Nanoce1779_2|195044|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MFPFLPSMHTLTLYLQSSFSMHPQARQSAITNEICEIVAGASSVGGGDGN
AKDLLAFEYENGDEFEGERIREFADWFKDLDEYKEGLLEDALYVCACECT
CVVSLRWFEGTKWFCECLSSGWGGGRREGGREGGNLKDGPSVLSCVLSQE
HTHVDGQSRPHALPPCLPAGPRAAHFPLRYLIQY*
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mRNA from alignment at scaffold_24:166005..166936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8395 ID=mRNA_8395|Name=jgi.p|Nanoce1779_2|195044|organism=Nannochloropsis oceanica|type=mRNA|length=932bp|location=Sequence derived from alignment at scaffold_24:166005..166936- (Nannochloropsis oceanica)
TAATAAAACATATCCCCTTCTTGAGAGACTCGCCATTATGATCGTAATAC
ACAAAGGGGGGGGCTCGGCTACTACTCTTAAACTGAATTTCGTGAATTTC
TTCCATGTTTCCCTTCCTCCCCTCCATGCACACACTCACCCTCTACCTCC
AATCGTCCTTTTCCATGCACCCCCAGGCGCGTCAATCGGCCATCACCAAC
GAGATTTGCGAGATCGTGGCCGGTGCCTCCAGCGTCGGGGGGGGAGACGG
AAATGCCAAGGACTTGTTGGCGTTTGAATACGAGAACGGGGATGAATTCG
AGGGGGAGCGCATCAGGGAGTTCGCGGACTGGTTCAAGGATTTGGACGAG
TACAAGGAGGGTTTGTTGGAGGACGCGTAAAGACTCGAAAGCTGCGTGGA
GGAGAGGGGGAGGGGTGGAGGGAGGGAGGGGTTGGAGGGTAGGCTGTTGA
GGAGGCGGTGGGTGTGTCTGGGAGTGGCGGGAGGGAAAAGAGGAAGATTG
TATGTGTGTGCGTGTGAATGTACGTGTGTCGTATCTTTGCGATGGTTCGA
AGGCACCAAATGGTTTTGTGAGTGCCTCTCCTCTGGATGGGGAGGGGGCA
GGAGGGAGGGAGGGAGGGAGGGAGGGAATTTGAAGGATGGTCCATCAGTG
CTTTCGTGTGTGTTGAGCCAAGAACACACACACGTGGATGGACAGTCACG
CCCTCACGCCCTCCCTCCCTGCCTACCTGCCGGTCCTCGGGCAGCGCATT
TCCCCCTAAGGTATCTAATACAGTACTAACTATTTTATTTCCCTCTTACC
TTCGTCATTCCTGCGCAGTGAGTCCTTAGTCAGAAAACAAGCACAGGATC
AATCATATCTTTAAGAGGGAGGGAGAGAGGGAAGAGGGTGGGATGGAGTA
GAGGGTGCGAGGACCTTGCCTTCTTATTTCTT
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Coding sequence (CDS) from alignment at scaffold_24:166005..166936-

>mRNA_8395 ID=mRNA_8395|Name=jgi.p|Nanoce1779_2|195044|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_24:166005..166936- (Nannochloropsis oceanica)
ATTGTATGTGTGTGCGTGTGAATGTACGTGTGTCGTATCTTTGCGATGGT
TCGAAGGCACCAAATGGTTTTGTGAGTGCCTCTCCTCTGGATGGGGAGGG
GGCAGGAGGGAGGGAGGGAGGGAGGGAGGGAATTTGAAGGATGGTCCATC
AGTGCTTTCGTGTGTGTTGAGCCAAGAACACACACACGTGGATGGACAGT
CACGCCCTCACGCCCTCCCTCCCTGCCTACCTGCCGGTCCTCGGGCAGCG
CATTTCCCCCTAAGGTATCTAATACAGTACTAAATGTTTCCCTTCCTCCC
CTCCATGCACACACTCACCCTCTACCTCCAATCGTCCTTTTCCATGCACC
CCCAGGCGCGTCAATCGGCCATCACCAACGAGATTTGCGAGATCGTGGCC
GGTGCCTCCAGCGTCGGGGGGGGAGACGGAAATGCCAAGGACTTGTTGGC
GTTTGAATACGAGAACGGGGATGAATTCGAGGGGGAGCGCATCAGGGAGT
TCGCGGACTGGTTCAAGGATTTGGACGAGTACAAGGAGGGTTTGTTGGAG
GACGCATTGTATGTGTGTGCGTGTGAATGTACGTGTGTCGTATCTTTGCG
ATGGTTCGAAGGCACCAAATGGTTTTGTGAGTGCCTCTCCTCTGGATGGG
GAGGGGGCAGGAGGGAGGGAGGGAGGGAGGGAGGGAATTTGAAGGATGGT
CCATCAGTGCTTTCGTGTGTGTTGAGCCAAGAACACACACACGTGGATGG
ACAGTCACGCCCTCACGCCCTCCCTCCCTGCCTACCTGCCGGTCCTCGGG
CAGCGCATTTCCCCCTAAGGTATCTAATACAGTACTAAATGTTTCCCTTC
CTCCCCTCCATGCACACACTCACCCTCTACCTCCAATCGTCCTTTTCCAT
GCACCCCCAGGCGCGTCAATCGGCCATCACCAACGAGATTTGCGAGATCG
TGGCCGGTGCCTCCAGCGTCGGGGGGGGAGACGGAAATGCCAAGGACTTG
TTGGCGTTTGAATACGAGAACGGGGATGAATTCGAGGGGGAGCGCATCAG
GGAGTTCGCGGACTGGTTCAAGGATTTGGACGAGTACAAGGAGGGTTTGT
TGGAGGACGC
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Synonyms
Publications