jgi.p|Nanoce1779_2|601865, mRNA_8390 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601865
Unique NamemRNA_8390
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length448
Alignment locationscaffold_24:153391..154608 +

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Properties
Property NameValue
TranscriptId601951
TrackFilteredModels2
ProteinId601865
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:153391..154608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601865gene_8390Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601865mRNA_8390-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8390CDS_8390Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8390 ID=mRNA_8390|Name=jgi.p|Nanoce1779_2|601865|organism=Nannochloropsis oceanica|type=mRNA|length=448bp
AGGAGGACTCCAAGGGCGAGATTTCGACAACTGGGCCGGGCACGCGCTAC
CTTCGATATATCTAGACCAAAAATGGCAACCAAGAAAGACACTGTCCTCG
ACTTGAATAAGTACTTGGACAAAGCCGTGCGTGTGCGATTCCAGGGCGGG
CGGGAAGTGAGCGGCATTCTGAAGGGCTTCGACCAACTCATCAACCTGGT
GCTAGATGAGAGCAAGGAGACCCTCAGAGACCCCGCAGATCCCTACCGAC
TCACGGAGGATACGCGGGACTTGGGCTTGCTCGTCTGTCGAGGGACGCAA
GTGTCCCTCATAAGTCCGGTGGAGGGCACAGAGGAGATAGCCAATCCTTT
CGTTCAAGCAGAGGATGAGGCATGAGGCCGCGGCATGGGGGAGGGAGGAA
GGATGATGTAAGCAAGCTAACAAAAGAAAAAGATTGGAGAAACAAAAT
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protein sequence of jgi.p|Nanoce1779_2|601865

>mRNA_8390-protein ID=mRNA_8390-protein|Name=jgi.p|Nanoce1779_2|601865|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MATKKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKET
LRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAEDEA
*
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mRNA from alignment at scaffold_24:153391..154608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8390 ID=mRNA_8390|Name=jgi.p|Nanoce1779_2|601865|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at scaffold_24:153391..154608+ (Nannochloropsis oceanica)
AGGAGGACTCCAAGGGCGAGATTTCGACAACTGGGCCGGGCACGCGCTAC
CTTCGATATATCTAGACCAAAAATGGTAGGTGAAGATACCTCGGTGCGGT
GAGGATGTTGCAACATGACAAGGCGTAGAGGGTAAAGCCACCCCAGTTTC
TGGGCAAGGGTTCCGGGAGCAAGGATGTATACAGCGCCTCTTCCATTCCC
TCGATGTCAGGCTGGCAAGGGTGTCCAACCGTTTTTTCTTTTAGCACTTG
CAGACCCGCTCTCTTCTCTCTTGAAGACCCCCCCATTCCCTCCTTCTCCC
CTCCCTCCCTCCAACTCACCCACCCTTTAAAAGGCAACCAAGAAAGACAC
TGTCCTCGACTTGAATAAGTACTTGGACAAAGCCGTGCGTGTGCGATTCC
AGGGCGGGCGGGAAGGTGCGTATGTCTACTTGGCGTGGCGGCGGTGTGTG
TAACGTAGGTGTGTAGGACCGAGAGGGCAAGGAAAGGATTGAGGAGAGTG
CTGCGTGGGTGTATGACGGTAGTGCCAGTGGCATATGTATGTGCAAAGGT
GTGTGCTGCCAAGACTAGCGGAATAGCGTGCCGTGCGGGGGTGAGTGTAA
TGGGACCGCTAGAGAAGGAGGGTCATCTTGTGTAGGTATGTCTATGTAGG
GGTAAACGCAGAAAGCTGAACCCGTTTCTAAGATCCTATCCTCTTTTTTC
ACGCGCCCAAATCGTCTCCCTCGGCATCGACCCTCTTCTCCCCCAATACC
ATCCCTTACATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCC
TCCCTCCCTCCGTCTCTTCCTCCCAGTGAGCGGCATTCTGAAGGGCTTCG
ACCAACTCATCAACCTGGTGCTAGATGAGAGCAAGGAGACCCTCAGAGGT
ACACCACACCACTTATTCCCCTTTCTCAGTCTACCCCCTCGTCACCCTCA
ATGGCCATTCTCTCACTCTTTCTCCCCGTTCTTCTTTCCCCCCTTTTAGA
CCCCGCAGATCCCTACCGACTCACGGAGGATACGCGGGACTTGGGCTTGC
TCGTCTGTCGAGGGACGCAAGTGTCCCTCATAAGTCCGGTGGAGGGCACA
GAGGAGATAGCCAATCCTTTCGTTCAAGCAGAGGATGAGGCATGAGGCCG
CGGCATGGGGGAGGGAGGAAGGATGATGTAAGCAAGCTAACAAAAGAAAA
AGATTGGAGAAACAAAAT
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Coding sequence (CDS) from alignment at scaffold_24:153391..154608+

>mRNA_8390 ID=mRNA_8390|Name=jgi.p|Nanoce1779_2|601865|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_24:153391..154608+ (Nannochloropsis oceanica)
ATGGCAACCAAGAAAGACACTGTCCTCGACTTGAATAAGTACTTGGACAA
AGCCGTGCGTGTGCGATTCCAGGGCGGGCGGGAAGTGAGCGGCATTCTGA
AGGGCTTCGACCAACTCATCAACCTGGTGCTAGATGAGAGCAAGGAGACC
CTCAGAGACCCCGCAGATCCCTACCGACTCACGGAGGATACGCGGGACTT
GGGCTTGCTCGTCTGTCGAGGGACGCAAGTGTCCCTCATAAGTCCGGTGG
AGGGCACAGAGGAGATAGCCAATCCTTTCGTTCAAGCAGAGGATGAGGCA
TGAATGGCAACCAAGAAAGACACTGTCCTCGACTTGAATAAGTACTTGGA
CAAAGCCGTGCGTGTGCGATTCCAGGGCGGGCGGGAAGTGAGCGGCATTC
TGAAGGGCTTCGACCAACTCATCAACCTGGTGCTAGATGAGAGCAAGGAG
ACCCTCAGAGACCCCGCAGATCCCTACCGACTCACGGAGGATACGCGGGA
CTTGGGCTTGCTCGTCTGTCGAGGGACGCAAGTGTCCCTCATAAGTCCGG
TGGAGGGCACAGAGGAGATAGCCAATCCTTTCGTTCAAGCAGAGGATGAG
GCATGAATGGCAACCAAGAAAGACACTGTCCTCGACTTGAATAAGTACTT
GGACAAAGCCGTGCGTGTGCGATTCCAGGGCGGGCGGGAAGTGAGCGGCA
TTCTGAAGGGCTTCGACCAACTCATCAACCTGGTGCTAGATGAGAGCAAG
GAGACCCTCAGAGACCCCGCAGATCCCTACCGACTCACGGAGGATACGCG
GGACTTGGGCTTGCTCGTCTGTCGAGGGACGCAAGTGTCCCTCATAAGTC
CGGTGGAGGGCACAGAGGAGATAGCCAATCCTTTCGTTCAAGCAGAGGAT
GAGGCATGAATGGCAACCAAGAAAGACACTGTCCTCGACTTGAATAAGTA
CTTGGACAAAGCCGTGCGTGTGCGATTCCAGGGCGGGCGGGAAGTGAGCG
GCATTCTGAAGGGCTTCGACCAACTCATCAACCTGGTGCTAGATGAGAGC
AAGGAGACCCTCAGAGACCCCGCAGATCCCTACCGACTCACGGAGGATAC
GCGGGACTTGGGCTTGCTCGTCTGTCGAGGGACGCAAGTGTCCCTCATAA
GTCCGGTGGAGGGCACAGAGGAGATAGCCAATCCTTTCGTTCAAGCAGAG
GATGAGGCATGA
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Synonyms
Publications