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Properties
| Property Name | Value |
|---|
| TranscriptId | 574397 |
| Track | FilteredModels2 |
| ProteinId | 574311 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:548159..549243 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_839 ID=mRNA_839|Name=jgi.p|Nanoce1779_2|574311|organism=Nannochloropsis oceanica|type=mRNA|length=902bp
ACAACAGCAGGACCCCTCCATCGCACCACTCTCAGCGTTTTCGTATGACT
ACCACCACACCATCACTACAAGACAAAAACATCAGTCCTGGATCTCTCCG
CCTGTTGGCCCGAGAAGGGAAATTCACATGCAACACTTCTGGATGCTGCC
CCGGCTACGTGCAGGCTAACCTTGTTATTTTGCCGCGCGAGCACGCCTTC
GACTTCATGACCTTTTGCGTGCGCAACTTTAAAGCCTGTCCCCTCCTAGA
TGTTACGGATCCAGGTAATCCCCACCCGCCCGCATGGCTCGTCAAGGGTG
GTGCCGATTTGCGGACAGACTTGCCAAATTATCGAGTGTGGCAAGACGGC
ACACTCCTCCATGAGGTCGATGACATTCGAGCCTTTTGGCGACAGGACTC
TGTAGCCTTCCTTCTTGGTTGCTCATTTTCCTTTGATGAAGCCCTCCTGC
AAGCCGGCCTGCCAGTACGCCACATCCAAGAAGGCAAAAATGTTTCCATG
TACAAAACTACCATCCCGTGCCGTCCCGCAGGGCGCTTCAAAGGGAATAT
GGTCGTGTCCATGCGTCCGTTTCATCCCCAGCAAGTCAGCCACGTTATCC
AAGTCACTTCCCGATTCAAGGCCGTCCATGGTGCACCAGTTCACGTGGGT
GATCCTGCCGCTATCGGCATCGCTGACTTAAGCAGACCAGATTATGGAGA
GGCTGTCTTGGTAGCCAAGGGGGAGGTGCCTGTGTTTTTTGCATGTGGTG
TCACCCCACAAAATGCCGTATTGACAAGTAAACCGAGAGGGATTGTGATT
ACACATGCCCCAGGTGCCATGTTCGTGACAGATGTGTTGAATGAGGCCTT
GACGTTGAGTTAAGCTGGACTGCAAAAGAAAGAAGAAAACGAAAAGCACG
GT back to topprotein sequence of jgi.p|Nanoce1779_2|574311 >mRNA_839-protein ID=mRNA_839-protein|Name=jgi.p|Nanoce1779_2|574311|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MTTTTPSLQDKNISPGSLRLLAREGKFTCNTSGCCPGYVQANLVILPREH
AFDFMTFCVRNFKACPLLDVTDPGNPHPPAWLVKGGADLRTDLPNYRVWQ
DGTLLHEVDDIRAFWRQDSVAFLLGCSFSFDEALLQAGLPVRHIQEGKNV
SMYKTTIPCRPAGRFKGNMVVSMRPFHPQQVSHVIQVTSRFKAVHGAPVH
VGDPAAIGIADLSRPDYGEAVLVAKGEVPVFFACGVTPQNAVLTSKPRGI
VITHAPGAMFVTDVLNEALTLS* back to topmRNA from alignment at scaffold_2:548159..549243+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_839 ID=mRNA_839|Name=jgi.p|Nanoce1779_2|574311|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp|location=Sequence derived from alignment at scaffold_2:548159..549243+ (Nannochloropsis oceanica)
ACAACAGCAGGACCCCTCCATCGCACCACTCTCAGCGTTTTCGTATGACT
ACCACCACACCATCACTACAAGACAAAAACATCAGTCCTGGATCTCTCCG
CCTGTTGGCCCGAGAAGGGAAATTCACATGCAACACTTCTGGATGCTGCC
CCGGCTACGTGCAGGCTAACCTTGTTATTTTGCCGCGCGAGCACGCCTTC
GACTTCATGACCTTTTGCGTGCGCAACTTTAAAGCCTGTCCCCTCCTAGA
TGTTACGGATCCAGGTAATCCCCACCCGCCCGCATGGCTCGTCAAGGGTG
GTGCCGATTTGCGGACAGACTTGCCAAATTATCGAGGTACGTGTAAGGTT
TAAAGCTTCAGTGGGAGTGAAGAAATTTAAGAAAGAGAATTCGACCCATT
TTATCGAGGTGCACTCTCAAATTCCTCGGCGATACAGCCACGAAACATGA
ATTGAAGGAGTAAGAGCGTCATTCATAACTCAGCCATATATCGATCATTT
CTACCCTTCGCAACCACAGTGTGGCAAGACGGCACACTCCTCCATGAGGT
CGATGACATTCGAGCCTTTTGGCGACAGGACTCTGTAGCCTTCCTTCTTG
GTTGCTCATTTTCCTTTGATGAAGCCCTCCTGCAAGCCGGCCTGCCAGTA
CGCCACATCCAAGAAGGCAAAAATGTTTCCATGTACAAAACTACCATCCC
GTGCCGTCCCGCAGGGCGCTTCAAAGGGAATATGGTCGTGTCCATGCGTC
CGTTTCATCCCCAGCAAGTCAGCCACGTTATCCAAGTCACTTCCCGATTC
AAGGCCGTCCATGGTGCACCAGTTCACGTGGGTGATCCTGCCGCTATCGG
CATCGCTGACTTAAGCAGACCAGATTATGGAGAGGCTGTCTTGGTAGCCA
AGGGGGAGGTGCCTGTGTTTTTTGCATGTGGTGTCACCCCACAAAATGCC
GTATTGACAAGTAAACCGAGAGGGATTGTGATTACACATGCCCCAGGTGC
CATGTTCGTGACAGATGTGTTGAATGAGGCCTTGACGTTGAGTTAAGCTG
GACTGCAAAAGAAAGAAGAAAACGAAAAGCACGGT back to topCoding sequence (CDS) from alignment at scaffold_2:548159..549243+ >mRNA_839 ID=mRNA_839|Name=jgi.p|Nanoce1779_2|574311|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_2:548159..549243+ (Nannochloropsis oceanica)
ATGACTACCACCACACCATCACTACAAGACAAAAACATCAGTCCTGGATC
TCTCCGCCTGTTGGCCCGAGAAGGGAAATTCACATGCAACACTTCTGGAT
GCTGCCCCGGCTACGTGCAGGCTAACCTTGTTATTTTGCCGCGCGAGCAC
GCCTTCGACTTCATGACCTTTTGCGTGCGCAACTTTAAAGCCTGTCCCCT
CCTAGATGTTACGGATCCAGGTAATCCCCACCCGCCCGCATGGCTCGTCA
AGGGTGGTGCCGATTTGCGGACAGACTTGCCAAATTATCGAGTGTGGCAA
GACGGCACACTCCTCCATGAGGTCGATGACATTCGAGCCTTTTGGCGACA
GGACTCTGTAGCCTTCCTTCTTGGTTGCTCATTTTCCTTTGATGAAGCCC
TCCTGCAAGCCGGCCTGCCAGTACGCCACATCCAAGAAGGCAAAAATGTT
TCCATGTACAAAACTACCATCCCGTGCCGTCCCGCAGGGCGCTTCAAAGG
GAATATGGTCGTGTCCATGCGTCCGTTTCATCCCCAGCAAGTCAGCCACG
TTATCCAAGTCACTTCCCGATTCAAGGCCGTCCATGGTGCACCAGTTCAC
GTGGGTGATCCTGCCGCTATCGGCATCGCTGACTTAAGCAGACCAGATTA
TGGAGAGGCTGTCTTGGTAGCCAAGGGGGAGGTGCCTGTGTTTTTTGCAT
GTGGTGTCACCCCACAAAATGCCGTATTGACAAGTAAACCGAGAGGGATT
GTGATTACACATGCCCCAGGTGCCATGTTCGTGACAGATGTGTTGAATGA
GGCCTTGACGTTGAGTTAAATGACTACCACCACACCATCACTACAAGACA
AAAACATCAGTCCTGGATCTCTCCGCCTGTTGGCCCGAGAAGGGAAATTC
ACATGCAACACTTCTGGATGCTGCCCCGGCTACGTGCAGGCTAACCTTGT
TATTTTGCCGCGCGAGCACGCCTTCGACTTCATGACCTTTTGCGTGCGCA
ACTTTAAAGCCTGTCCCCTCCTAGATGTTACGGATCCAGGTAATCCCCAC
CCGCCCGCATGGCTCGTCAAGGGTGGTGCCGATTTGCGGACAGACTTGCC
AAATTATCGAGTGTGGCAAGACGGCACACTCCTCCATGAGGTCGATGACA
TTCGAGCCTTTTGGCGACAGGACTCTGTAGCCTTCCTTCTTGGTTGCTCA
TTTTCCTTTGATGAAGCCCTCCTGCAAGCCGGCCTGCCAGTACGCCACAT
CCAAGAAGGCAAAAATGTTTCCATGTACAAAACTACCATCCCGTGCCGTC
CCGCAGGGCGCTTCAAAGGGAATATGGTCGTGTCCATGCGTCCGTTTCAT
CCCCAGCAAGTCAGCCACGTTATCCAAGTCACTTCCCGATTCAAGGCCGT
CCATGGTGCACCAGTTCACGTGGGTGATCCTGCCGCTATCGGCATCGCTG
ACTTAAGCAGACCAGATTATGGAGAGGCTGTCTTGGTAGCCAAGGGGGAG
GTGCCTGTGTTTTTTGCATGTGGTGTCACCCCACAAAATGCCGTATTGAC
AAGTAAACCGAGAGGGATTGTGATTACACATGCCCCAGGTGCCATGTTCG
TGACAGATGTGTTGAATGAGGCCTTGACGTTGAGTTAA back to top
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