jgi.p|Nanoce1779_2|601847, mRNA_8386 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601847
Unique NamemRNA_8386
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1148
Alignment locationscaffold_24:144747..146077 -

Link to JBrowse

Properties
Property NameValue
TranscriptId601933
TrackFilteredModels2
ProteinId601847
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:144747..146077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601847gene_8386Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601847mRNA_8386-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8386CDS_8386Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8386 ID=mRNA_8386|Name=jgi.p|Nanoce1779_2|601847|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
ACAGCTGCCTAGCCCACCCGTCCGAAGATCATGGCTGTGTCATCCTGGTC
GTCCTCGATAACCTCCTCCCTTGCCTCCTTTCTTCCTTCTTCGGCCACCG
ATGCGGCAACTGCCACGCTGGCCTGGTTCACGGGCACACACCCTACACCT
CCACCACCACCTATAGATACAAGTGCGAGGGTCGAGCTGGTCATGAGTTT
GATTCTCCTGGCGCAATTGGCCCTTTTGCTATTGATCTTTCAATTTTTGA
CGCCGGTCAAGGGAGGCGTCGGGCGGTGGCTGCCTCCACCTGAGACGGAC
AAAGGCGCTTACGAACGCTTTGTCTTGACCTACACCCCCGTATGGATTGG
TGTCTTTGCTGTCATTATCGCTGGACAACTCTACGAGTCTTTCACCGCTA
ACACTTATATGCTTGTTTGTGCCGGATTATGCGTCCCCCTTTTTCTCTAT
GCTGTCCTCGCCCCCTCCCTGCCTCCTCATGTCCCTCCAAGTGATGCACT
AGCCGGATCATCCTCCTTCTTCGAGCGGTACCCATTCAAGGCGTCGGTTT
GGTTAGCGATTTACTCGCATATCGGCAATTATTGGTACACACATTACTTT
TACGCGGTCCTTAAAGCCTCCTACAGCATGCCGTCCTTCCGCCTGAACGA
TGTGCCCTTGCCTCTATACTTCGCGACGTTTTTCTACTTCTCGACCTACC
ACATCCTGTCGAATGTATTGCTACGACGAGTGTGTACTGGGTATGCACCT
AACATTTTCCGCTCCATCTTTCTGGTGTGCTTGGTGGTGGTTTTGAGCTA
CTTCACTGCGTTCACTGAGACATTAACAATCAGCTCGTTCCCCTACTATT
CGTTTGAAAATCCGTTCATGGCCATGACCGTGGGAAGTGCATTTTATGGA
ATTTATTTTCTGGTAAGCTTTCCGGCGTTCTTCCGACTGGATGAGTGGGA
GGGGGCGAGGTTGAGTCTGTATCAGACAGGAATGGATTCTCTGGGTGCAG
GGATGTTGATTCTCATATTGTTGGATGCCGTCAGGCTGTGCTTGGCGATT
CCTCTGACGATCAAAGGGTAGGGGTATCACTGTTGTTCACGATAATACGA
GGATGTTTACATGCATGTAAAAGGAATTAAAAATACTCTATTCTTTCC
back to top

protein sequence of jgi.p|Nanoce1779_2|601847

>mRNA_8386-protein ID=mRNA_8386-protein|Name=jgi.p|Nanoce1779_2|601847|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MAVSSWSSSITSSLASFLPSSATDAATATLAWFTGTHPTPPPPPIDTSAR
VELVMSLILLAQLALLLLIFQFLTPVKGGVGRWLPPPETDKGAYERFVLT
YTPVWIGVFAVIIAGQLYESFTANTYMLVCAGLCVPLFLYAVLAPSLPPH
VPPSDALAGSSSFFERYPFKASVWLAIYSHIGNYWYTHYFYAVLKASYSM
PSFRLNDVPLPLYFATFFYFSTYHILSNVLLRRVCTGYAPNIFRSIFLVC
LVVVLSYFTAFTETLTISSFPYYSFENPFMAMTVGSAFYGIYFLVSFPAF
FRLDEWEGARLSLYQTGMDSLGAGMLILILLDAVRLCLAIPLTIKG*
back to top

mRNA from alignment at scaffold_24:144747..146077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8386 ID=mRNA_8386|Name=jgi.p|Nanoce1779_2|601847|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp|location=Sequence derived from alignment at scaffold_24:144747..146077- (Nannochloropsis oceanica)
ACAGCTGCCTAGCCCACCCGTCCGAAGATCATGGCTGTGTCATCCTGGTC GTCCTCGATAACCTCCTCCCTTGCCTCCTTTCTTCCTTCTTCGGCCACCG ATGCGGCAACTGCCACGCTGGCCTGGTTCACGGGCACACACCCTACACCT CCACCACCACCTATAGATACAAGTGCGAGGGTCGAGCTGGTCATGAGTTT GATTCTCCTGGCGCAATTGGCCCTTTTGCTATTGATCTTTCAATTTTTGA CGCCGGTCAAGGGAGGCGTCGGGCGGTGGCTGCCTCCACCTGAGACGGAC AAAGGTACATGTATATTTGTGCGTGCTTGAAGCAGGAAAAAAAGGAAGAG CGAGACAAGCTTCTCGTAATGAAAGTAGAGCTTTGATGCACGCATTCTGC GAATCCCACCTACCCAGCTCCCTTATCCTCCCTTCCCTCCCTTCCCTCCC TCATCCCCCCTCATCCCTCTCCTTTCGCTCATAACAGGCGCTTACGAACG CTTTGTCTTGACCTACACCCCCGTATGGATTGGTGTCTTTGCTGTCATTA TCGCTGGACAACTCTACGAGTCTTTCACCGCTAACACTTATATGCTTGTT TGTGCCGGATTATGCGTCCCCCTTTTTCTCTATGCTGTCCTCGCCCCCTC CCTGCCTCCTCATGTCCCTCCAAGTGATGCACTAGCCGGATCATCCTCCT TCTTCGAGCGGTACCCATTCAAGGCGTCGGTTTGGTTAGCGATTTACTCG CATATCGGCAATTATTGGTACACACATTACTTTTACGCGGTCCTTAAAGC CTCCTACAGCATGCCGTCCTTCCGCCTGAACGATGTGCCCTTGCCTCTAT ACTTCGCGACGTTTTTCTACTTCTCGACCTACCACATCCTGTCGAATGTA TTGCTACGACGAGTGTGTACTGGGTATGCACCTAACATTTTCCGCTCCAT CTTTCTGGTGTGCTTGGTGGTGGTTTTGAGCTACTTCACTGCGTTCACTG AGACATTAACAATCAGCTCGTTCCCCTACTATTCGTTTGAAAATCCGTTC ATGGCCATGACCGTGGGAAGTGCATTTTATGGAATTTATTTTCTGGTAAG CTTTCCGGCGTTCTTCCGACTGGATGAGTGGGAGGGGGCGAGGTTGAGTC TGTATCAGACAGGAATGGATTCTCTGGGTGCAGGGATGTTGATTCTCATA TTGTTGGATGCCGTCAGGCTGTGCTTGGCGATTCCTCTGACGATCAAAGG GTAGGGGTATCACTGTTGTTCACGATAATACGAGGATGTTTACATGCATG TAAAAGGAATTAAAAATACTCTATTCTTTCC
back to top

Coding sequence (CDS) from alignment at scaffold_24:144747..146077-

>mRNA_8386 ID=mRNA_8386|Name=jgi.p|Nanoce1779_2|601847|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at scaffold_24:144747..146077- (Nannochloropsis oceanica)
GCGCTTACGAACGCTTTGTCTTGACCTACACCCCCGTATGGATTGGTGTC
TTTGCTGTCATTATCGCTGGACAACTCTACGAGTCTTTCACCGCTAACAC
TTATATGCTTGTTTGTGCCGGATTATGCGTCCCCCTTTTTCTCTATGCTG
TCCTCGCCCCCTCCCTGCCTCCTCATGTCCCTCCAAGTGATGCACTAGCC
GGATCATCCTCCTTCTTCGAGCGGTACCCATTCAAGGCGTCGGTTTGGTT
AGCGATTTACTCGCATATCGGCAATTATTGGTACACACATTACTTTTACG
CGGTCCTTAAAGCCTCCTACAGCATGCCGTCCTTCCGCCTGAACGATGTG
CCCTTGCCTCTATACTTCGCGACGTTTTTCTACTTCTCGACCTACCACAT
CCTGTCGAATGTATTGCTACGACGAGTGTGTACTGGGTATGCACCTAACA
TTTTCCGCTCCATCTTTCTGGTGTGCTTGGTGGTGGTTTTGAGCTACTTC
ACTGCGTTCACTGAGACATTAACAATCAGCTCGTTCCCCTACTATTCGTT
TGAAAATCCGTTCATGGCCATGACCGTGGGAAGTGCATTTTATGGAATTT
ATTTTCTGGTAAGCTTTCCGGCGTTCTTCCGACTGGATGAGTGGGAGGGG
GCGAGGTTGAGTCTGTATCAGACAGGAATGGATTCTCTGGGTGCAGGGAT
GTTGATTCTCATATTGTTGGATGCCGTCAGGCTGTGCTTGGCGATTCCTC
TGACGATCAAAGGGTAGATGGCTGTGTCATCCTGGTCGTCCTCGATAACC
TCCTCCCTTGCCTCCTTTCTTCCTTCTTCGGCCACCGATGCGGCAACTGC
CACGCTGGCCTGGTTCACGGGCACACACCCTACACCTCCACCACCACCTA
TAGATACAAGTGCGAGGGTCGAGCTGGTCATGAGTTTGATTCTCCTGGCG
CAATTGGCCCTTTTGCTATTGATCTTTCAATTTTTGACGCCGGTCAAGGG
AGGCGTCGGGCGGTGGCTGCCTCCACCTGAGACGGACAAAGGCGCTTACG
AACGCTTTGTCTTGACCTACACCCCCGTATGGATTGGTGTCTTTGCTGTC
ATTATCGCTGGACAACTCTACGAGTCTTTCACCGCTAACACTTATATGCT
TGTTTGTGCCGGATTATGCGTCCCCCTTTTTCTCTATGCTGTCCTCGCCC
CCTCCCTGCCTCCTCATGTCCCTCCAAGTGATGCACTAGCCGGATCATCC
TCCTTCTTCGAGCGGTACCCATTCAAGGCGTCGGTTTGGTTAGCGATTTA
CTCGCATATCGGCAATTATTGGTACACACATTACTTTTACGCGGTCCTTA
AAGCCTCCTACAGCATGCCGTCCTTCCGCCTGAACGATGTGCCCTTGCCT
CTATACTTCGCGACGTTTTTCTACTTCTCGACCTACCACATCCTGTCGAA
TGTATTGCTACGACGAGTGTGTACTGGGTATGCACCTAACATTTTCCGCT
CCATCTTTCTGGTGTGCTTGGTGGTGGTTTTGAGCTACTTCACTGCGTTC
ACTGAGACATTAACAATCAGCTCGTTCCCCTACTATTCGTTTGAAAATCC
GTTCATGGCCATGACCGTGGGAAGTGCATTTTATGGAATTTATTTTCTGG
TAAGCTTTCCGGCGTTCTTCCGACTGGATGAGTGGGAGGGGGCGAGGTTG
AGTCTGTATCAGACAGGAATGGATTCTCTGGGTGCAGGGATGTTGATTCT
CATATTGTTGGATGCCGTCAGGCTGTGCTTGGCGATTCCTCTGACGATCA
AAGGGTAGATGGCTGTGTCATCCTGGTCGTCCTCGATAACCTCCTCCCTT
GCCTCCTTTCTTCCTTCTTCGGCCACCGATGCGGCAACTGCCACGCTGGC
CTGGTTCACGGGCACACACCCTACACCTCCACCACCACCTATAGATACAA
GTGCGAGGGTCGAGCTGGTCATGAGTTTGATTCTCCTGGCGCAATTGGCC
CTTTTGCTATTGATCTTTCAATTTTTGACGCCGGTCAAGGGAGGCGTCGG
GCGGTGGCTGCCTCCACCTGAGACGGACAAAG
back to top
Synonyms
Publications