jgi.p|Nanoce1779_2|194065, mRNA_8384 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|194065
Unique Name	mRNA_8384
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2313
Alignment location	scaffold_24:137020..139511 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	194151
Track	FilteredModels2
ProteinId	194065

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:137020..139511 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|194065	gene_8384	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|194065	mRNA_8384-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8384	CDS_8384	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:137020..139511+
coding sequence from alignment at scaffold_24:137020..139511+

mRNA sequence

>mRNA_8384 ID=mRNA_8384|Name=jgi.p|Nanoce1779_2|194065|organism=Nannochloropsis oceanica|type=mRNA|length=2313bp
AGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGG
AGGAGGAGATGCAAGAGCAACGTGTTCAACGAGACGCCAGCGTCGAATAC
AGCCTTTTCTCCTCCTCTTTCCTCGACCCTTTGTCATCCTCCCTTCTTCC
CAGCCTCCCTCCCTCTCCCCGTCAGATAGCCGCGGAGACGTACCCGCTTG
ATCGGAAACGGAAGGACGGGAGTGCGTATTTAAAACTGCTAATCGCCACT
CAGTTGGGGCCTCACTATGTGTTATTGTCCTCAGTGCGACGCCTGCAGAT
GAGGCTTAGGGTGTACATTCGACGGGAGTTTCTACAGGAGGAGGAGGAGG
AGGTGGTGGAGGAGAAGGAGGAGGGCGAGGGTGGGAGGGAGGAAGGAGGG
AGGAAGGGAGGGAAAAAGATATGGAAGCCGTTGAAGAAATGGAAGAAGAA
GAAGGGAAGAAGAAAAGGGAGGAGAAGGAGGGGGGAGAGGAGGAGGACGA
GAGGAGGGCAGAGGCGCTCGGTTCCAGGTACACGCAAACAGAGGAGGAGA
GAGGGAAGAAGAAGGGAAGGATGGAGAGAGGGAGCGGTTGGTGCGTGACG
TGCGCTTCGCGGGGGAGAACACGGGAGTGATGCACGTGTTTGGAAATAAG
GGGGGCTTGGCCGTGAGCGTGCGAATAGGGGCCACCACTCTTGTCTTTGT
GTCGTGTCATCTCGCGGCCCATGAGGGGAGGAGGTTCGAGCGCCATGGGC
AAGTGAAGGAGATCGTGAGAGGGGCAAGGAGCGTGGGGCCGGAGGGAGGG
CCGGAAGGAGGGAGGGTGGACTTGACGGAGGGCGGAGGGCATGTGTTTTG
GTTTGGCGATCTAAATTACCGTCTGGATCCCTCCCTCTCCCCCTCCCTCG
CCTCCCTCCCTTGGGAAGAGCAGCGGGCGGAGATCCTCTCCCTGATTGCT
GCGGGGGATTTCGCCTCCCTCCTTGCCCTCGACGAGCTGCGCCACTCCTT
AGCCTCAGAGCAGGTGCTGGTTGGGTTCCAGGACGCCCTCCCTCCCGCCT
TCCCTCCCTCCTTCAAGTTTCTGAGGGGATCGGAGGGCGGGAGGGAGGAC
GGGAAGGAGGGAGGGGAGCAGGAACGTGAGCGGCGTCCCTCGCTCACCGA
CTGGTTGTTGATGCGGCCTGCGTCAGGAGTGAAGGAGGGAGCGAGGGAGG
GAAGAAAGGAGGGAGGGAAGGAGGGCGGAGCATACCACCCTGCGCGACTT
CCGTCTTACACAGACCGCATCCTGACGCGGTCATTGCCGGGGCTCAAGGA
GGACCTGACGTGTGTCTTGTATGAGAGCTGCCCGCTGTTTATGAGCAGTG
ATCACAAACCGGTGCGGGCGTGTTTTGAAATAACGCCGACGGTAGACCCC
TCCCTCCCTTCCTCCCTCGTGGGGAGTCTCCGTTCTGTGGGGCTTGAAAA
GGGAGGCAGTGGGAAAGGCAGTTGCCACACCTCTCCCTCCCTCCCTCCCT
CGCGCCCGTCCTCTCGCAATGGCCTGCTTCCTCCGACCCCCTCCCTCTTT
CCCTCCCTCCACCTCTCTCCCTTCTCGCCTTCCCCCTCCTCCCTTCACTT
CCTCCCCCACTGCTTCCCTCGGCTCCTCTTCTTCGATCTTCGTGGAATCG
ATCTGCCCGTCATGGACGTAGAGGGAGCGGGGGGCTCTACGGATGCCTAC
CTCGTTTTCACGCCCCTCCCTCCCTCCCTCCCTCTCCTCAACAAACACTC
TGTCCGAACCAAGGTCGTGCCCAAGAGCCTTAATCCCGTGTGGATCGTGA
AGGAAGGCGGGAAGGAGGGAGGGGGGGGAAAGGGAGAGAAAAAGTGGAGG
ACACGACGGAGGAAGAGCGAAGAGGTCTCCCTACTGCTGAACATGCCGTT
GGGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGACGAGGGGGAGGAAGAGC
GCTGGAAGGCTGTGCATATTTGCATCACTGCCATGGATAGGGATCTAACC
AGCTCTGACGATCTCATTGGATTCGCCGTCCTCCCCATCATTGACGTCTA
CCGCCTCACGGTCTCCTCCTCCTCCTCCTCTCCCTCCCGCCCTCCCTCCT
ACTCATTTAACCTCCCATTGATGAAAAACGGCACGGGAGGTCGCGGTCGA
ATCCAGGGACGGGTCCGACTGGCGTGGCCCGAGAGGGGCAGAAGCTTTCC
TGACACGAGCAGGAGGGCGGGATTGAAAGGGTGCAGCGTAATGTAAAATG
TAGAAGTGAGCTGCATATCACACGAAGTAATAAATTCCAACAAAAAATAA
GGAAAAAAAAGGA

protein sequence of jgi.p|Nanoce1779_2|194065

>mRNA_8384-protein ID=mRNA_8384-protein|Name=jgi.p|Nanoce1779_2|194065|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MHVFGNKGGLAVSVRIGATTLVFVSCHLAAHEGRRFERHGQVKEIVRGAR
SVGPEGGPEGGRVDLTEGGGHVFWFGDLNYRLDPSLSPSLASLPWEEQRA
EILSLIAAGDFASLLALDELRHSLASEQVLVGFQDALPPAFPPSFKFLRG
SEGGREDGKEGGEQERERRPSLTDWLLMRPASGVKEGAREGRKEGGKEGG
AYHPARLPSYTDRILTRSLPGLKEDLTCVLYESCPLFMSSDHKPVRACFE
ITPTVDPSLPSSLVGSLRSVGLEKGGSGKGSCHTSPSLPPSRPSSRNGLL
PPTPSLFPSLHLSPFSPSPSSLHFLPHCFPRLLFFDLRGIDLPVMDVEGA
GGSTDAYLVFTPLPPSLPLLNKHSVRTKVVPKSLNPVWIVKEGGKEGGGG
KGEKKWRTRRRKSEEVSLLLNMPLGEGGREGGKEDEGEEERWKAVHICIT
AMDRDLTSSDDLIGFAVLPIIDVYRLTVSSSSSSPSRPPSYSFNLPLMKN
GTGGRGRIQGRVRLAWPERGRSFPDTSRRAGLKGCSVM*

mRNA from alignment at scaffold_24:137020..139511+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8384 ID=mRNA_8384|Name=jgi.p|Nanoce1779_2|194065|organism=Nannochloropsis oceanica|type=mRNA|length=2492bp|location=Sequence derived from alignment at scaffold_24:137020..139511+ (Nannochloropsis oceanica)
AGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGG
AGGAGGAGATGCAAGAGCAACGTGTTCAACGAGACGCCAGCGTCGAATAC
AGCCTTTTCTCCTCCTCTTTCCTCGACCCTTTGTCATCCTCCCTTCTTCC
CAGCCTCCCTCCCTCTCCCCGTCAGATAGCCGCGGAGACGTACCCGCTTG
ATCGGAAACGGAAGGACGGGAGTGCGTATTTAAAACTGCTAATCGCCACT
CAGTTGGGGCCTCACTATGTGTTATTGTCCTCAGTGCGACGCCTGCAGAT
GAGGCTTAGGGTGTACATTCGACGGGAGTTTCTACAGGAGGAGGAGGAGG
AGGTGGTGGAGGAGAAGGAGGAGGGCGAGGGTGGGAGGGAGGAAGGAGGG
AGGAAGGGAGGGAAAAAGATATGGAAGCCGTTGAAGAAATGGAAGAAGAA
GAAGGGAAGAAGAAAAGGGAGGAGAAGGAGGGGGGAGAGGAGGAGGACGA
GAGGAGGGCAGAGGCGCTCGGTTCCAGGTACACGCAAACAGAGGAGGAGA
GAGGGAAGAAGAAGGGAAGGATGGAGAGAGGGAGCGGTTGGTGCGTGACG
TGCGCTTCGCGGGGGAGAACACGGGAGTGATGCACGTGTTTGGAAATAAG
GGGGGCTTGGCCGTGAGCGTGCGAATAGGGGCCACCACTCTTGTCTTTGT
GTCGTGTCATCTCGCGGCCCATGAGGGGAGGAGGTTCGAGCGCCATGGGC
AAGTGAAGGAGATCGTGAGAGGGGCAAGGAGCGTGGGGCCGGAGGGAGGG
CCGGAAGGAGGGAGGGTGGACTTGACGGAGGGCGGAGGGCATGTGTTTTG
GTTTGGCGGTATGTGGCACGGGAGGGAGGGAAGGAGGAAGGGAGGGAAGG
AGGGAGGCCGATATTCGAAGTTGAACGAATGGCAACATGGCCGCCCTGAC
CATTCATCCCTCCCTCCCTCCCGCCCTCCCTCCCTTCCTCCATCCCTCCC
TCGTTCCCTCCCTCCTTTCCTCCCTCCTTCCCCCTAGATCTAAATTACCG
TCTGGATCCCTCCCTCTCCCCCTCCCTCGCCTCCCTCCCTTGGGAAGAGC
AGCGGGCGGAGATCCTCTCCCTGATTGCTGCGGGGGATTTCGCCTCCCTC
CTTGCCCTCGACGAGCTGCGCCACTCCTTAGCCTCAGAGCAGGTGCTGGT
TGGGTTCCAGGACGCCCTCCCTCCCGCCTTCCCTCCCTCCTTCAAGTTTC
TGAGGGGATCGGAGGGCGGGAGGGAGGACGGGAAGGAGGGAGGGGAGCAG
GAACGTGAGCGGCGTCCCTCGCTCACCGACTGGTTGTTGATGCGGCCTGC
GTCAGGAGTGAAGGAGGGAGCGAGGGAGGGAAGAAAGGAGGGAGGGAAGG
AGGGCGGAGCATACCACCCTGCGCGACTTCCGTCTTACACAGACCGCATC
CTGACGCGGTCATTGCCGGGGCTCAAGGAGGACCTGACGTGTGTCTTGTA
TGAGAGCTGCCCGCTGTTTATGAGCAGTGATCACAAACCGGTGCGGGCGT
GTTTTGAAATAACGCCGACGGTAGACCCCTCCCTCCCTTCCTCCCTCGTG
GGGAGTCTCCGTTCTGTGGGGCTTGAAAAGGGAGGCAGTGGGAAAGGCAG
TTGCCACACCTCTCCCTCCCTCCCTCCCTCGCGCCCGTCCTCTCGCAATG
GCCTGCTTCCTCCGACCCCCTCCCTCTTTCCCTCCCTCCACCTCTCTCCC
TTCTCGCCTTCCCCCTCCTCCCTTCACTTCCTCCCCCACTGCTTCCCTCG
GCTCCTCTTCTTCGATCTTCGTGGAATCGATCTGCCCGTCATGGACGTAG
AGGGAGCGGGGGGCTCTACGGATGCCTACCTCGTTTTCACGCCCCTCCCT
CCCTCCCTCCCTCTCCTCAACAAACACTCTGTCCGAACCAAGGTCGTGCC
CAAGAGCCTTAATCCCGTGTGGATCGTGAAGGAAGGCGGGAAGGAGGGAG
GGGGGGGAAAGGGAGAGAAAAAGTGGAGGACACGACGGAGGAAGAGCGAA
GAGGTCTCCCTACTGCTGAACATGCCGTTGGGGGAGGGAGGGAGGGAGGG
AGGGAAGGAAGACGAGGGGGAGGAAGAGCGCTGGAAGGCTGTGCATATTT
GCATCACTGCCATGGATAGGGATCTAACCAGCTCTGACGATCTCATTGGA
TTCGCCGTCCTCCCCATCATTGACGTCTACCGCCTCACGGTCTCCTCCTC
CTCCTCCTCTCCCTCCCGCCCTCCCTCCTACTCATTTAACCTCCCATTGA
TGAAAAACGGCACGGGAGGTCGCGGTCGAATCCAGGGACGGGTCCGACTG
GCGTGGCCCGAGAGGGGCAGAAGCTTTCCTGACACGAGCAGGAGGGCGGG
ATTGAAAGGGTGCAGCGTAATGTAAAATGTAGAAGTGAGCTGCATATCAC
ACGAAGTAATAAATTCCAACAAAAAATAAGGAAAAAAAAGGA

Coding sequence (CDS) from alignment at scaffold_24:137020..139511+

>mRNA_8384 ID=mRNA_8384|Name=jgi.p|Nanoce1779_2|194065|organism=Nannochloropsis oceanica|type=CDS|length=3234bp|location=Sequence derived from alignment at scaffold_24:137020..139511+ (Nannochloropsis oceanica)
ATGCACGTGTTTGGAAATAAGGGGGGCTTGGCCGTGAGCGTGCGAATAGG
GGCCACCACTCTTGTCTTTGTGTCGTGTCATCTCGCGGCCCATGAGGGGA
GGAGGTTCGAGCGCCATGGGCAAGTGAAGGAGATCGTGAGAGGGGCAAGG
AGCGTGGGGCCGGAGGGAGGGCCGGAAGGAGGGAGGGTGGACTTGACGGA
GGGCGGAGGGCATGTGTTTTGGTTTGGCGATCTAAATTACCGTCTGGATC
CCTCCCTCTCCCCCTCCCTCGCCTCCCTCCCTTGGGAAGAGCAGCGGGCG
GAGATCCTCTCCCTGATTGCTGCGGGGGATTTCGCCTCCCTCCTTGCCCT
CGACGAGCTGCGCCACTCCTTAGCCTCAGAGCAGGTGCTGGTTGGGTTCC
AGGACGCCCTCCCTCCCGCCTTCCCTCCCTCCTTCAAGTTTCTGAGGGGA
TCGGAGGGCGGGAGGGAGGACGGGAAGGAGGGAGGGGAGCAGGAACGTGA
GCGGCGTCCCTCGCTCACCGACTGGTTGTTGATGCGGCCTGCGTCAGGAG
TGAAGGAGGGAGCGAGGGAGGGAAGAAAGGAGGGAGGGAAGGAGGGCGGA
GCATACCACCCTGCGCGACTTCCGTCTTACACAGACCGCATCCTGACGCG
GTCATTGCCGGGGCTCAAGGAGGACCTGACGTGTGTCTTGTATGAGAGCT
GCCCGCTGTTTATGAGCAGTGATCACAAACCGGTGCGGGCGTGTTTTGAA
ATAACGCCGACGGTAGACCCCTCCCTCCCTTCCTCCCTCGTGGGGAGTCT
CCGTTCTGTGGGGCTTGAAAAGGGAGGCAGTGGGAAAGGCAGTTGCCACA
CCTCTCCCTCCCTCCCTCCCTCGCGCCCGTCCTCTCGCAATGGCCTGCTT
CCTCCGACCCCCTCCCTCTTTCCCTCCCTCCACCTCTCTCCCTTCTCGCC
TTCCCCCTCCTCCCTTCACTTCCTCCCCCACTGCTTCCCTCGGCTCCTCT
TCTTCGATCTTCGTGGAATCGATCTGCCCGTCATGGACGTAGAGGGAGCG
GGGGGCTCTACGGATGCCTACCTCGTTTTCACGCCCCTCCCTCCCTCCCT
CCCTCTCCTCAACAAACACTCTGTCCGAACCAAGGTCGTGCCCAAGAGCC
TTAATCCCGTGTGGATCGTGAAGGAAGGCGGGAAGGAGGGAGGGGGGGGA
AAGGGAGAGAAAAAGTGGAGGACACGACGGAGGAAGAGCGAAGAGGTCTC
CCTACTGCTGAACATGCCGTTGGGGGAGGGAGGGAGGGAGGGAGGGAAGG
AAGACGAGGGGGAGGAAGAGCGCTGGAAGGCTGTGCATATTTGCATCACT
GCCATGGATAGGGATCTAACCAGCTCTGACGATCTCATTGGATTCGCCGT
CCTCCCCATCATTGACGTCTACCGCCTCACGGTCTCCTCCTCCTCCTCCT
CTCCCTCCCGCCCTCCCTCCTACTCATTTAACCTCCCATTGATGAAAAAC
GGCACGGGAGGTCGCGGTCGAATCCAGGGACGGGTCCGACTGGCGTGGCC
CGAGAGGGGCAGAAGCTTTCCTGACACGAGCAGGAGGGCGGGATTGAAAG
GGTGCAGCGTAATGTAAATGCACGTGTTTGGAAATAAGGGGGGCTTGGCC
GTGAGCGTGCGAATAGGGGCCACCACTCTTGTCTTTGTGTCGTGTCATCT
CGCGGCCCATGAGGGGAGGAGGTTCGAGCGCCATGGGCAAGTGAAGGAGA
TCGTGAGAGGGGCAAGGAGCGTGGGGCCGGAGGGAGGGCCGGAAGGAGGG
AGGGTGGACTTGACGGAGGGCGGAGGGCATGTGTTTTGGTTTGGCGATCT
AAATTACCGTCTGGATCCCTCCCTCTCCCCCTCCCTCGCCTCCCTCCCTT
GGGAAGAGCAGCGGGCGGAGATCCTCTCCCTGATTGCTGCGGGGGATTTC
GCCTCCCTCCTTGCCCTCGACGAGCTGCGCCACTCCTTAGCCTCAGAGCA
GGTGCTGGTTGGGTTCCAGGACGCCCTCCCTCCCGCCTTCCCTCCCTCCT
TCAAGTTTCTGAGGGGATCGGAGGGCGGGAGGGAGGACGGGAAGGAGGGA
GGGGAGCAGGAACGTGAGCGGCGTCCCTCGCTCACCGACTGGTTGTTGAT
GCGGCCTGCGTCAGGAGTGAAGGAGGGAGCGAGGGAGGGAAGAAAGGAGG
GAGGGAAGGAGGGCGGAGCATACCACCCTGCGCGACTTCCGTCTTACACA
GACCGCATCCTGACGCGGTCATTGCCGGGGCTCAAGGAGGACCTGACGTG
TGTCTTGTATGAGAGCTGCCCGCTGTTTATGAGCAGTGATCACAAACCGG
TGCGGGCGTGTTTTGAAATAACGCCGACGGTAGACCCCTCCCTCCCTTCC
TCCCTCGTGGGGAGTCTCCGTTCTGTGGGGCTTGAAAAGGGAGGCAGTGG
GAAAGGCAGTTGCCACACCTCTCCCTCCCTCCCTCCCTCGCGCCCGTCCT
CTCGCAATGGCCTGCTTCCTCCGACCCCCTCCCTCTTTCCCTCCCTCCAC
CTCTCTCCCTTCTCGCCTTCCCCCTCCTCCCTTCACTTCCTCCCCCACTG
CTTCCCTCGGCTCCTCTTCTTCGATCTTCGTGGAATCGATCTGCCCGTCA
TGGACGTAGAGGGAGCGGGGGGCTCTACGGATGCCTACCTCGTTTTCACG
CCCCTCCCTCCCTCCCTCCCTCTCCTCAACAAACACTCTGTCCGAACCAA
GGTCGTGCCCAAGAGCCTTAATCCCGTGTGGATCGTGAAGGAAGGCGGGA
AGGAGGGAGGGGGGGGAAAGGGAGAGAAAAAGTGGAGGACACGACGGAGG
AAGAGCGAAGAGGTCTCCCTACTGCTGAACATGCCGTTGGGGGAGGGAGG
GAGGGAGGGAGGGAAGGAAGACGAGGGGGAGGAAGAGCGCTGGAAGGCTG
TGCATATTTGCATCACTGCCATGGATAGGGATCTAACCAGCTCTGACGAT
CTCATTGGATTCGCCGTCCTCCCCATCATTGACGTCTACCGCCTCACGGT
CTCCTCCTCCTCCTCCTCTCCCTCCCGCCCTCCCTCCTACTCATTTAACC
TCCCATTGATGAAAAACGGCACGGGAGGTCGCGGTCGAATCCAGGGACGG
GTCCGACTGGCGTGGCCCGAGAGGGGCAGAAGCTTTCCTGACACGAGCAG
GAGGGCGGGATTGAAAGGGTGCAGCGTAATGTAA

Synonyms

Publications