jgi.p|Nanoce1779_2|194237, mRNA_8383 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|194237
Unique NamemRNA_8383
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1633
Alignment locationscaffold_24:136200..137832 +

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Properties
Property NameValue
TranscriptId194323
TrackFilteredModels2
ProteinId194237
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:136200..137832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|194237gene_8383Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|194237mRNA_8383-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8383CDS_8383Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8383 ID=mRNA_8383|Name=jgi.p|Nanoce1779_2|194237|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp
ATTCACACAGACGACCACACAGGGCTGGCCAGGCCTGTAGCGCGAGAAAA
AGGGACAGGGAGGGAAGGGAGCCAGAGCAAGAATCAATCGCACCTGTACC
TGTGATAAGGCCCCCACAGGACATGCCCACCCTACTCCCACAAGATGGGC
CAGGGCTCGCCCCTATGCCAACAGCACTCGAAGAGCAACAGGTGCAGGCG
TATCCCCGTCGTCAATGTCGGTCGCGGCGGTCGTCAGGAAGCAATACGCC
TGGCCCACGGCCATTACACCAACCGGAACTAACGATGCCTGCGGCTTTCT
TAACGGAAGGATTTTACAGTACTCTCAGTCGAGCAGCAGCAAGAACGACA
ACAATGACGAAGAAAGCAGAGGTAGAAGAAGAAGGAAAGCAGAATGAGGG
AGGCAGGGAGGACGAACCAGCAGGAGGAGAAGGCGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGTGGAGGAGGCACAGTGCATGCCAGAGGAGTAGGAGAAAGTGG
AGGGAAAGGAGGTAACGGGGTTGAAGCAGCACAAGCAGAAACACCAACGT
CAGCATCAGGTACCAGGACACCCAAATTCAAGGTCTTGGTGTGCACGCTA
AATGTCGGGAACAAAATGCCGATGGACCTGACTCCCTTGATTCCTCGAGG
GGGAGGGAAAAATGACGTGATCGCGGTAGGCATGCAAGAAAGCTGGTTTA
GCATGAAGAAAGAGAAGTGGTGGAGGAAGGAGGGCGAGCAGGAGGGTGCG
GAGGAGGAGGTGGAGGAAAGAGGTGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGTGGAGGAGGAGATGCAAGAGCAACGTGTTCAAC
GAGACGCCAGCGTCGAATACAGCCTTTTCTCCTCCTCTTTCCTCGACCCT
TTGTCATCCTCCCTTCTTCCCAGCCTCCCTCCCTCTCCCCGTCAGATAGC
CGCGGAGACGTACCCGCTTGATCGGAAACGGAAGGACGGGAGTGCGTATT
TAAAACTGCTAATCGCCACTCAGTTGGGGCCTCACTATGTGTTATTGTCC
TCAGTGCGACGCCTGCAGATGAGGCTTAGGGTGTACATTCGACGGGAGTT
TCTACAGGAGGAGGAGGAGGAGGTGGTGGAGGAGAAGGAGGAGGGCGAGG
GTGGGAGGGAGGAAGGAGGGAGGAAGGGAGGGAAAAAGATATGGAAGCCG
TTGAAGAAATGGAAGAAGAAGAAGGGAAGAAGAAAAGGGAGGAGAAGGAG
GGGGGAGAGGAGGAGGACGAGAGGAGGGCAGAGGCGCTCGGTTCCAGGTA
CACGCAAACAGAGGAGGAGAGAGGGAAGAAGAAGGGAAGGATGGAGAGAG
GGAGCGGTTGGTGCGTGACGTGCGCTTCGCGGGGGAGAACACGGGAGTGA
TGCACGTGTTTGGAAATAAGGGGGGCTTGGCCGTGAGCGTGCGAATAGGG
GCCACCACTCTTGTCTTTGTGTCGTGTCATCTCGCGGCCCATGAGGGGAG
GAGGTTCGAGCGCCATGGGCAAGTGAAGGAGATCGTGAGAGGGGCAAGGA
GCGTGGGGCCGGAGGGAGGGCCGGAAGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|194237

>mRNA_8383-protein ID=mRNA_8383-protein|Name=jgi.p|Nanoce1779_2|194237|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MPTLLPQDGPGLAPMPTALEEQQVQAYPRRQCRSRRSSGSNTPGPRPLHQ
PELTMPAAFLTEGFYSTLSRAAARTTTMTKKAEVEEEGKQNEGGREDEPA
GGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTVHARGVGESGGKGGNGV
EAAQAETPTSASGTRTPKFKVLVCTLNVGNKMPMDLTPLIPRGGGKNDVI
AVGMQESWFSMKKEKWWRKEGEQEGAEEEVEERGEEEEEEEEEEEEEEVE
EEMQEQRVQRDASVEYSLFSSSFLDPLSSSLLPSLPPSPRQIAAETYPLD
RKRKDGSAYLKLLIATQLGPHYVLLSSVRRLQMRLRVYIRREFLQEEEEE
VVEEKEEGEGGREEGGRKGGKKIWKPLKKWKKKKGRRKGRRRRGERRRTR
GGQRRSVPGTRKQRRREGRRREGWREGAVGA*
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mRNA from alignment at scaffold_24:136200..137832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8383 ID=mRNA_8383|Name=jgi.p|Nanoce1779_2|194237|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp|location=Sequence derived from alignment at scaffold_24:136200..137832+ (Nannochloropsis oceanica)
ATTCACACAGACGACCACACAGGGCTGGCCAGGCCTGTAGCGCGAGAAAA
AGGGACAGGGAGGGAAGGGAGCCAGAGCAAGAATCAATCGCACCTGTACC
TGTGATAAGGCCCCCACAGGACATGCCCACCCTACTCCCACAAGATGGGC
CAGGGCTCGCCCCTATGCCAACAGCACTCGAAGAGCAACAGGTGCAGGCG
TATCCCCGTCGTCAATGTCGGTCGCGGCGGTCGTCAGGAAGCAATACGCC
TGGCCCACGGCCATTACACCAACCGGAACTAACGATGCCTGCGGCTTTCT
TAACGGAAGGATTTTACAGTACTCTCAGTCGAGCAGCAGCAAGAACGACA
ACAATGACGAAGAAAGCAGAGGTAGAAGAAGAAGGAAAGCAGAATGAGGG
AGGCAGGGAGGACGAACCAGCAGGAGGAGAAGGCGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGTGGAGGAGGCACAGTGCATGCCAGAGGAGTAGGAGAAAGTGG
AGGGAAAGGAGGTAACGGGGTTGAAGCAGCACAAGCAGAAACACCAACGT
CAGCATCAGGTACCAGGACACCCAAATTCAAGGTCTTGGTGTGCACGCTA
AATGTCGGGAACAAAATGCCGATGGACCTGACTCCCTTGATTCCTCGAGG
GGGAGGGAAAAATGACGTGATCGCGGTAGGCATGCAAGAAAGCTGGTTTA
GCATGAAGAAAGAGAAGTGGTGGAGGAAGGAGGGCGAGCAGGAGGGTGCG
GAGGAGGAGGTGGAGGAAAGAGGTGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGTGGAGGAGGAGATGCAAGAGCAACGTGTTCAAC
GAGACGCCAGCGTCGAATACAGCCTTTTCTCCTCCTCTTTCCTCGACCCT
TTGTCATCCTCCCTTCTTCCCAGCCTCCCTCCCTCTCCCCGTCAGATAGC
CGCGGAGACGTACCCGCTTGATCGGAAACGGAAGGACGGGAGTGCGTATT
TAAAACTGCTAATCGCCACTCAGTTGGGGCCTCACTATGTGTTATTGTCC
TCAGTGCGACGCCTGCAGATGAGGCTTAGGGTGTACATTCGACGGGAGTT
TCTACAGGAGGAGGAGGAGGAGGTGGTGGAGGAGAAGGAGGAGGGCGAGG
GTGGGAGGGAGGAAGGAGGGAGGAAGGGAGGGAAAAAGATATGGAAGCCG
TTGAAGAAATGGAAGAAGAAGAAGGGAAGAAGAAAAGGGAGGAGAAGGAG
GGGGGAGAGGAGGAGGACGAGAGGAGGGCAGAGGCGCTCGGTTCCAGGTA
CACGCAAACAGAGGAGGAGAGAGGGAAGAAGAAGGGAAGGATGGAGAGAG
GGAGCGGTTGGTGCGTGACGTGCGCTTCGCGGGGGAGAACACGGGAGTGA
TGCACGTGTTTGGAAATAAGGGGGGCTTGGCCGTGAGCGTGCGAATAGGG
GCCACCACTCTTGTCTTTGTGTCGTGTCATCTCGCGGCCCATGAGGGGAG
GAGGTTCGAGCGCCATGGGCAAGTGAAGGAGATCGTGAGAGGGGCAAGGA
GCGTGGGGCCGGAGGGAGGGCCGGAAGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_24:136200..137832+

>mRNA_8383 ID=mRNA_8383|Name=jgi.p|Nanoce1779_2|194237|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_24:136200..137832+ (Nannochloropsis oceanica)
ATGCCCACCCTACTCCCACAAGATGGGCCAGGGCTCGCCCCTATGCCAAC
AGCACTCGAAGAGCAACAGGTGCAGGCGTATCCCCGTCGTCAATGTCGGT
CGCGGCGGTCGTCAGGAAGCAATACGCCTGGCCCACGGCCATTACACCAA
CCGGAACTAACGATGCCTGCGGCTTTCTTAACGGAAGGATTTTACAGTAC
TCTCAGTCGAGCAGCAGCAAGAACGACAACAATGACGAAGAAAGCAGAGG
TAGAAGAAGAAGGAAAGCAGAATGAGGGAGGCAGGGAGGACGAACCAGCA
GGAGGAGAAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGCACAG
TGCATGCCAGAGGAGTAGGAGAAAGTGGAGGGAAAGGAGGTAACGGGGTT
GAAGCAGCACAAGCAGAAACACCAACGTCAGCATCAGGTACCAGGACACC
CAAATTCAAGGTCTTGGTGTGCACGCTAAATGTCGGGAACAAAATGCCGA
TGGACCTGACTCCCTTGATTCCTCGAGGGGGAGGGAAAAATGACGTGATC
GCGGTAGGCATGCAAGAAAGCTGGTTTAGCATGAAGAAAGAGAAGTGGTG
GAGGAAGGAGGGCGAGCAGGAGGGTGCGGAGGAGGAGGTGGAGGAAAGAG
GTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAG
GAGGAGATGCAAGAGCAACGTGTTCAACGAGACGCCAGCGTCGAATACAG
CCTTTTCTCCTCCTCTTTCCTCGACCCTTTGTCATCCTCCCTTCTTCCCA
GCCTCCCTCCCTCTCCCCGTCAGATAGCCGCGGAGACGTACCCGCTTGAT
CGGAAACGGAAGGACGGGAGTGCGTATTTAAAACTGCTAATCGCCACTCA
GTTGGGGCCTCACTATGTGTTATTGTCCTCAGTGCGACGCCTGCAGATGA
GGCTTAGGGTGTACATTCGACGGGAGTTTCTACAGGAGGAGGAGGAGGAG
GTGGTGGAGGAGAAGGAGGAGGGCGAGGGTGGGAGGGAGGAAGGAGGGAG
GAAGGGAGGGAAAAAGATATGGAAGCCGTTGAAGAAATGGAAGAAGAAGA
AGGGAAGAAGAAAAGGGAGGAGAAGGAGGGGGGAGAGGAGGAGGACGAGA
GGAGGGCAGAGGCGCTCGGTTCCAGGTACACGCAAACAGAGGAGGAGAGA
GGGAAGAAGAAGGGAAGGATGGAGAGAGGGAGCGGTTGGTGCGTGA
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Synonyms
Publications