jgi.p|Nanoce1779_2|194063, mRNA_8382 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|194063
Unique NamemRNA_8382
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1556
Alignment locationscaffold_24:134643..136198 -

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Properties
Property NameValue
TranscriptId194149
TrackFilteredModels2
ProteinId194063
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:134643..136198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|194063gene_8382Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|194063mRNA_8382-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8382CDS_8382Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8382 ID=mRNA_8382|Name=jgi.p|Nanoce1779_2|194063|organism=Nannochloropsis oceanica|type=mRNA|length=1556bp
CGTGCCAAGTGTAAGTTGTACGGATCTGTCCTCTCAGTGGGTGATTGCTG
TTGTTGGAAAGGCAACGTACGAGACCCGGCTGATATGCGGGCTTGGGCTG
GGGCTGCTTTAGCATTGCGTGACGAACTCTCCCCATCCTCAGTTAGCCAA
GTAAAGCCCACACGCAGACACCCCTACATACACGCTTTCACACAAACATA
CAAAGAGTATTAACAGATGTGGGCGTCGGCCCTGCGGAGGTGTATGCGGG
TTTGGGTTGTGCCTCCATTAATAACACCAGCGCAAGCTGCGGAACAAATT
CGACCTCCTCCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGC
TGCTGGTGGTGGTCTCGCATCATCTATACCACAATCCCCCCGACCGTTTG
CGGCATCTCCAAAACCTTCTTCTGATAGAATAGAGCAAACTCATTCTCTA
ACCACAACCTCCCTTTCCGCCTGGCCTGTTCTACTATGGCACTTCGACGA
AGCCGTCCTCCCTCCCTCCTTCCCTCCTTCCAGCCCTCCCTTCCCAATTT
CTTCTTCCTCCCTTATAAGCAAGAAAAAAGAAAACCAACGGCTGCTTCGC
AATCTTTTTCACGTCCTGCCTGATGATGTGCTCACTAATTTGGGCCCGTC
ACTATACATGTACGTTGAGGTTACCTCCCTCCGTCGAGTACCTGGCACAG
AGAGCCCCCTTTCTCCTCTTTATTTTTCCCCCTCTCTCCCTCCCCCCCTC
CCTTCCTGTCTCTCTCCTTCCCTTCATATCTTCCTTATTCTATATCCTTC
AACAAATCATTCATCATCATCCTCCCACGTCCTCCTACCCTCCCTCCCTT
CCTCCCTCCTCTTCTGCAGGTCAGCCGTCCGTCAGAATCTCGTCTCTCCC
TGGGGCGGATGGAGAGAGGGGCTGGCAGGCGGGAGTAATAGAAGGGTATT
GTTGGTTGATTTACACGGACACAGCGTCCGGCTTGCCCTTTTTGGAGCCT
TGCCGTTTGTGTGGGAAAAAATAGACGGAAGGAAGGAGGGAGGGAGGGAG
GGAGGAGGGATCACGCATGTGGTGACGGGCCATGGTCGAGGGAGGGAAAG
GAGGGAGGGAGGGATAGGGTGGAAGAAAGAGGGGGAAAGAAGAAGGAAGA
GAGGAGGGGAGAAGGAAGCCATTTTTTCATGTCCTCTGGCTTCTCCTTCC
AGCTCCTCCTCCTTCCCGCCCTCCTCCTCCTCCTCCGTGCTCTACAGCGC
AGTCTTCAATTGGATTTCTGAAGCAGTAAAGAAGGACGAGGACGGAGGGA
GGGAGGGAGGAAGGGAGGGATCGGTTGTGTGGAAGGAAAGTAAAGGGTGC
GTGGGCGTAAGGATGGGAGCAGTGCGAGACAGGAGGTAGATAGATTTGAT
ACGTTGTTTCAACATGGAAGATCACACTTGATTTGAATATTTTAATTCAA
AGAACGAATTGTTAATAAATTTTTGAAAAAGAATATCATGGTAAACATGA
GTAAAAAAAATAAATGGAAGAAATGAAAGAAAAAGAAAAAACATCCGCAC
TCAGAA
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protein sequence of jgi.p|Nanoce1779_2|194063

>mRNA_8382-protein ID=mRNA_8382-protein|Name=jgi.p|Nanoce1779_2|194063|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MWASALRRCMRVWVVPPLITPAQAAEQIRPPPAAAAAAAAAATAAAGGGL
ASSIPQSPRPFAASPKPSSDRIEQTHSLTTTSLSAWPVLLWHFDEAVLPP
SFPPSSPPFPISSSSLISKKKENQRLLRNLFHVLPDDVLTNLGPSLYMYV
EVTSLRRVPGTESPLSPLYFSPSLPPPLPSCLSPSLHIFLILYPSTNHSS
SSSHVLLPSLPSSLLFCRSAVRQNLVSPWGGWREGLAGGSNRRVLLVDLH
GHSVRLALFGALPFVWEKIDGRKEGGREGGGITHVVTGHGRGRERREGGI
GWKKEGERRRKRGGEKEAIFSCPLASPSSSSSFPPSSSSSVLYSAVFNWI
SEAVKKDEDGGREGGREGSVVWKESKGCVGVRMGAVRDRR*
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mRNA from alignment at scaffold_24:134643..136198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8382 ID=mRNA_8382|Name=jgi.p|Nanoce1779_2|194063|organism=Nannochloropsis oceanica|type=mRNA|length=1556bp|location=Sequence derived from alignment at scaffold_24:134643..136198- (Nannochloropsis oceanica)
CGTGCCAAGTGTAAGTTGTACGGATCTGTCCTCTCAGTGGGTGATTGCTG
TTGTTGGAAAGGCAACGTACGAGACCCGGCTGATATGCGGGCTTGGGCTG
GGGCTGCTTTAGCATTGCGTGACGAACTCTCCCCATCCTCAGTTAGCCAA
GTAAAGCCCACACGCAGACACCCCTACATACACGCTTTCACACAAACATA
CAAAGAGTATTAACAGATGTGGGCGTCGGCCCTGCGGAGGTGTATGCGGG
TTTGGGTTGTGCCTCCATTAATAACACCAGCGCAAGCTGCGGAACAAATT
CGACCTCCTCCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGC
TGCTGGTGGTGGTCTCGCATCATCTATACCACAATCCCCCCGACCGTTTG
CGGCATCTCCAAAACCTTCTTCTGATAGAATAGAGCAAACTCATTCTCTA
ACCACAACCTCCCTTTCCGCCTGGCCTGTTCTACTATGGCACTTCGACGA
AGCCGTCCTCCCTCCCTCCTTCCCTCCTTCCAGCCCTCCCTTCCCAATTT
CTTCTTCCTCCCTTATAAGCAAGAAAAAAGAAAACCAACGGCTGCTTCGC
AATCTTTTTCACGTCCTGCCTGATGATGTGCTCACTAATTTGGGCCCGTC
ACTATACATGTACGTTGAGGTTACCTCCCTCCGTCGAGTACCTGGCACAG
AGAGCCCCCTTTCTCCTCTTTATTTTTCCCCCTCTCTCCCTCCCCCCCTC
CCTTCCTGTCTCTCTCCTTCCCTTCATATCTTCCTTATTCTATATCCTTC
AACAAATCATTCATCATCATCCTCCCACGTCCTCCTACCCTCCCTCCCTT
CCTCCCTCCTCTTCTGCAGGTCAGCCGTCCGTCAGAATCTCGTCTCTCCC
TGGGGCGGATGGAGAGAGGGGCTGGCAGGCGGGAGTAATAGAAGGGTATT
GTTGGTTGATTTACACGGACACAGCGTCCGGCTTGCCCTTTTTGGAGCCT
TGCCGTTTGTGTGGGAAAAAATAGACGGAAGGAAGGAGGGAGGGAGGGAG
GGAGGAGGGATCACGCATGTGGTGACGGGCCATGGTCGAGGGAGGGAAAG
GAGGGAGGGAGGGATAGGGTGGAAGAAAGAGGGGGAAAGAAGAAGGAAGA
GAGGAGGGGAGAAGGAAGCCATTTTTTCATGTCCTCTGGCTTCTCCTTCC
AGCTCCTCCTCCTTCCCGCCCTCCTCCTCCTCCTCCGTGCTCTACAGCGC
AGTCTTCAATTGGATTTCTGAAGCAGTAAAGAAGGACGAGGACGGAGGGA
GGGAGGGAGGAAGGGAGGGATCGGTTGTGTGGAAGGAAAGTAAAGGGTGC
GTGGGCGTAAGGATGGGAGCAGTGCGAGACAGGAGGTAGATAGATTTGAT
ACGTTGTTTCAACATGGAAGATCACACTTGATTTGAATATTTTAATTCAA
AGAACGAATTGTTAATAAATTTTTGAAAAAGAATATCATGGTAAACATGA
GTAAAAAAAATAAATGGAAGAAATGAAAGAAAAAGAAAAAACATCCGCAC
TCAGAA
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Coding sequence (CDS) from alignment at scaffold_24:134643..136198-

>mRNA_8382 ID=mRNA_8382|Name=jgi.p|Nanoce1779_2|194063|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_24:134643..136198- (Nannochloropsis oceanica)
ATGTGGGCGTCGGCCCTGCGGAGGTGTATGCGGGTTTGGGTTGTGCCTCC
ATTAATAACACCAGCGCAAGCTGCGGAACAAATTCGACCTCCTCCCGCCG
CTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGGTGGTGGTCTC
GCATCATCTATACCACAATCCCCCCGACCGTTTGCGGCATCTCCAAAACC
TTCTTCTGATAGAATAGAGCAAACTCATTCTCTAACCACAACCTCCCTTT
CCGCCTGGCCTGTTCTACTATGGCACTTCGACGAAGCCGTCCTCCCTCCC
TCCTTCCCTCCTTCCAGCCCTCCCTTCCCAATTTCTTCTTCCTCCCTTAT
AAGCAAGAAAAAAGAAAACCAACGGCTGCTTCGCAATCTTTTTCACGTCC
TGCCTGATGATGTGCTCACTAATTTGGGCCCGTCACTATACATGTACGTT
GAGGTTACCTCCCTCCGTCGAGTACCTGGCACAGAGAGCCCCCTTTCTCC
TCTTTATTTTTCCCCCTCTCTCCCTCCCCCCCTCCCTTCCTGTCTCTCTC
CTTCCCTTCATATCTTCCTTATTCTATATCCTTCAACAAATCATTCATCA
TCATCCTCCCACGTCCTCCTACCCTCCCTCCCTTCCTCCCTCCTCTTCTG
CAGGTCAGCCGTCCGTCAGAATCTCGTCTCTCCCTGGGGCGGATGGAGAG
AGGGGCTGGCAGGCGGGAGTAATAGAAGGGTATTGTTGGTTGATTTACAC
GGACACAGCGTCCGGCTTGCCCTTTTTGGAGCCTTGCCGTTTGTGTGGGA
AAAAATAGACGGAAGGAAGGAGGGAGGGAGGGAGGGAGGAGGGATCACGC
ATGTGGTGACGGGCCATGGTCGAGGGAGGGAAAGGAGGGAGGGAGGGATA
GGGTGGAAGAAAGAGGGGGAAAGAAGAAGGAAGAGAGGAGGGGAGAAGGA
AGCCATTTTTTCATGTCCTCTGGCTTCTCCTTCCAGCTCCTCCTCCTTCC
CGCCCTCCTCCTCCTCCTCCGTGCTCTACAGCGCAGTCTTCAATTGGATT
TCTGAAGCAGTAAAGAAGGACGAGGACGGAGGGAGGGAGGGAGGAAGGGA
GGGATCGGTTGTGTGGAAGGAAAGTAAAGGGTGCGTGGGCGTAAGGATGG
GAGCAGTGCGAGACAGGAGGTAG
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Synonyms
Publications