jgi.p|Nanoce1779_2|601821, mRNA_8379 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601821
Unique NamemRNA_8379
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length852
Alignment locationscaffold_24:125678..126529 +

Link to JBrowse

Properties
Property NameValue
TranscriptId601907
TrackFilteredModels2
ProteinId601821
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:125678..126529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601821gene_8379Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601821mRNA_8379-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8379CDS_8379Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8379 ID=mRNA_8379|Name=jgi.p|Nanoce1779_2|601821|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
GGTAGCTTTCCATGACGTGGCCAAGCAGGCCCTCCTTCACTTTTCCTCCT
CCTCCTCCGCCTCTTCCTCCTTTCTTCCCTCCCTCCTTCGCCTCGCCCTC
CGCCCTTCCCTCCCCCCCTCCATCGCTCATCCCCTCCTCTCCCTCCTTCG
TTCCCTCTCCCTCCTCCCCGCCGGACGCCACCACCTTTTCCTCCCTTCCT
CTTCCCCCCCGTCTTCCTCTTTCCTGGCCTCCTCCCTCCTCTCCCTCGTT
CCCTCCCTCCTCCTCACCCCTTCTCCGGCCCATCGTCGTCGCCGACCGGC
AGAGGTCGGGAAGGAGGGATGGGTGCGCCTACTGGGTCTCTTTAAACTGC
TCGTCAATCTCACCCTGGCCGCAGAAGGGCAACAGCTCCTCCACCGGCAC
CTTCCTCCCGCCCTCCTACCCTCCGTTCTGGAAGACGTCGTTTTATTCAT
CAAAGAAGGCGAGAAGGACAAAGGGAAGGAGGGAGGGTGGGACGATGGGA
AGGAAGAAGAGGTTGAAGAGCTCACGGCACAACTCTGCTACCTTCTGCGA
AACCTCTCCTTCTTACGAGGAGGGGGGGGCAAGGGGGGAGGAAAGGCTAG
CGTTTTGGCCTCTGGGACGTTGTTGAGATTTCTGGTGTGTGACGCGATGA
CGCATTCAAAAATTCAAATTCGCTTCCCGGCAACGGTCGCCCTGTGGTCT
CTGTTACACCATTCGGAGAAGTCGACCGCGTTGCTCTTGCGCGGGGATTT
TTTGGCTTCATCCACCTCTTCCTCCCTTTCTTCCTCGCCCTCGTCCTCGG
TGCCTTCTTGTGTGGGTGTATGGCAACAGATAGCACTTGCAAAGAAGCTG
GC
back to top

protein sequence of jgi.p|Nanoce1779_2|601821

>mRNA_8379-protein ID=mRNA_8379-protein|Name=jgi.p|Nanoce1779_2|601821|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MTWPSRPSFTFPPPPPPLPPFFPPSFASPSALPSPPPSLIPSSPSFVPSP
SSPPDATTFSSLPLPPRLPLSWPPPSSPSFPPSSSPLLRPIVVADRQRSG
RRDGCAYWVSLNCSSISPWPQKGNSSSTGTFLPPSYPPFWKTSFYSSKKA
RRTKGRREGGTMGRKKRLKSSRHNSATFCETSPSYEEGGARGEERLAFWP
LGRC*
back to top

mRNA from alignment at scaffold_24:125678..126529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8379 ID=mRNA_8379|Name=jgi.p|Nanoce1779_2|601821|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at scaffold_24:125678..126529+ (Nannochloropsis oceanica)
GGTAGCTTTCCATGACGTGGCCAAGCAGGCCCTCCTTCACTTTTCCTCCT
CCTCCTCCGCCTCTTCCTCCTTTCTTCCCTCCCTCCTTCGCCTCGCCCTC
CGCCCTTCCCTCCCCCCCTCCATCGCTCATCCCCTCCTCTCCCTCCTTCG
TTCCCTCTCCCTCCTCCCCGCCGGACGCCACCACCTTTTCCTCCCTTCCT
CTTCCCCCCCGTCTTCCTCTTTCCTGGCCTCCTCCCTCCTCTCCCTCGTT
CCCTCCCTCCTCCTCACCCCTTCTCCGGCCCATCGTCGTCGCCGACCGGC
AGAGGTCGGGAAGGAGGGATGGGTGCGCCTACTGGGTCTCTTTAAACTGC
TCGTCAATCTCACCCTGGCCGCAGAAGGGCAACAGCTCCTCCACCGGCAC
CTTCCTCCCGCCCTCCTACCCTCCGTTCTGGAAGACGTCGTTTTATTCAT
CAAAGAAGGCGAGAAGGACAAAGGGAAGGAGGGAGGGTGGGACGATGGGA
AGGAAGAAGAGGTTGAAGAGCTCACGGCACAACTCTGCTACCTTCTGCGA
AACCTCTCCTTCTTACGAGGAGGGGGGGGCAAGGGGGGAGGAAAGGCTAG
CGTTTTGGCCTCTGGGACGTTGTTGAGATTTCTGGTGTGTGACGCGATGA
CGCATTCAAAAATTCAAATTCGCTTCCCGGCAACGGTCGCCCTGTGGTCT
CTGTTACACCATTCGGAGAAGTCGACCGCGTTGCTCTTGCGCGGGGATTT
TTTGGCTTCATCCACCTCTTCCTCCCTTTCTTCCTCGCCCTCGTCCTCGG
TGCCTTCTTGTGTGGGTGTATGGCAACAGATAGCACTTGCAAAGAAGCTG
GC
back to top

Coding sequence (CDS) from alignment at scaffold_24:125678..126529+

>mRNA_8379 ID=mRNA_8379|Name=jgi.p|Nanoce1779_2|601821|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_24:125678..126529+ (Nannochloropsis oceanica)
ATGACGTGGCCAAGCAGGCCCTCCTTCACTTTTCCTCCTCCTCCTCCGCC
TCTTCCTCCTTTCTTCCCTCCCTCCTTCGCCTCGCCCTCCGCCCTTCCCT
CCCCCCCTCCATCGCTCATCCCCTCCTCTCCCTCCTTCGTTCCCTCTCCC
TCCTCCCCGCCGGACGCCACCACCTTTTCCTCCCTTCCTCTTCCCCCCCG
TCTTCCTCTTTCCTGGCCTCCTCCCTCCTCTCCCTCGTTCCCTCCCTCCT
CCTCACCCCTTCTCCGGCCCATCGTCGTCGCCGACCGGCAGAGGTCGGGA
AGGAGGGATGGGTGCGCCTACTGGGTCTCTTTAAACTGCTCGTCAATCTC
ACCCTGGCCGCAGAAGGGCAACAGCTCCTCCACCGGCACCTTCCTCCCGC
CCTCCTACCCTCCGTTCTGGAAGACGTCGTTTTATTCATCAAAGAAGGCG
AGAAGGACAAAGGGAAGGAGGGAGGGTGGGACGATGGGAAGGAAGAAGAG
GTTGAAGAGCTCACGGCACAACTCTGCTACCTTCTGCGAAACCTCTCCTT
CTTACGAGGAGGGGGGGGCAAGGGGGGAGGAAAGGCTAGCGTTTTGGCCT
CTGGGACGTTGTTGA
back to top
Synonyms
Publications