jgi.p|Nanoce1779_2|194049, mRNA_8377 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|194049
Unique NamemRNA_8377
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1278
Alignment locationscaffold_24:116287..117564 -

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Properties
Property NameValue
TranscriptId194135
TrackFilteredModels2
ProteinId194049
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:116287..117564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|194049gene_8377Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|194049mRNA_8377-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8377CDS_8377Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8377 ID=mRNA_8377|Name=jgi.p|Nanoce1779_2|194049|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
TTTCAACCCCGACGAGATGAGTTAGAATCCGGAAGTCCTCAAGATCCTAC
CTCGTGCGCCCAAGTACGCGAAGTGTCTGAGCATGGACTCTGACGCTGAG
AGGGGCACAGATGAGGCAGGGGCGCCCTCGTACTCGTCATCAAATGGGCC
GTCCTTGCCCTTGCATGTGCTCTCCCCCGCACTCTTAGACCATGTCGGGC
CTCCGAGCCGACACTGCAGCCAATGGAAATCCTCAGAGATGACGCGTCAG
GATGGGCAGTCGGATACTGGTAATTATTATCGGCGCCGCTCCACCTCGGC
CTCAAACGACACCTCCACCCATAACACTTCACGCTTCCGTCGAAGCAGCT
GCGCCTCCACAGCGGGCGGCAGTGATGCAGACGATGACGATGAAAACTGG
AGCAATATCTACGTCGACGACGACTCTGATGACTCGGACTGTGACTCAAT
AGGAAACCCCTGTATGTCCCGGCGCTTTTCGGCGGTCATGCCGCATCGCG
TCTGGGCCTCTCCTCTCAAAACTTCCACGGCAGGCCGTACTAGTAACACC
AATGCAGGCAACTTCATCCATGGCGATGCACCTTTCTCCCAGATGACACT
GGCAGCCTTGATTGAAACGCAAGCGGAAGGCGAACAAGGCAGCATGCAAT
ACAAGCCAAGTGGCTTTCGCTCCCATAGTGAGTCTCACCAGCACAACAAC
CAAGCAAGTTTCTCCACAGCATCCACGCCTTGGCGGCAGCGTGAATCATC
GCTGGAAGACCCCAGCGGCAGTGTCAGCACTGCAAGCAGAGACACTCACT
CCCAGAAACCGACGCGGCCCCCTAGAAAGCATGGCTGCAAGAGGGGTCCG
GCCCTACTTACATTTTCGGTCAAAGATTGAGATGGCTATTCGCACAGCCT
CGGCAGCAGGATTTTCCACAGGCATCATGTTATTTGTGTGGAGCTGGGCA
CACTCTTTATCCTGGTTTGGAGTCACGCTTGCCATCTCAGGAACGCGAAA
GAGCTTGGGAGAAACATTTATGGCAGCATTTGATTTTTGGAAAGGCGGTT
TGCTGGTCTTGCCATGGATCTACGCCCTGAATGTGGTGCGCTCCCACGCT
ATCCTGACTTTGTTGGGGCTTTTCGTGTCTCTGATATTTATAATTTGGTT
CCCGGGTGTCTCGGATTCGGGTAAGAGCATGGCGACCATTTTCCTAACAG
TGGTCGTCTTGACAGGTGACAAAGACCCGGTAGTGCATTACAACAGTCTT
GTACGCGACCTGTACATGACAATGATCA
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protein sequence of jgi.p|Nanoce1779_2|194049

>mRNA_8377-protein ID=mRNA_8377-protein|Name=jgi.p|Nanoce1779_2|194049|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MDSDAERGTDEAGAPSYSSSNGPSLPLHVLSPALLDHVGPPSRHCSQWKS
SEMTRQDGQSDTGNYYRRRSTSASNDTSTHNTSRFRRSSCASTAGGSDAD
DDDENWSNIYVDDDSDDSDCDSIGNPCMSRRFSAVMPHRVWASPLKTSTA
GRTSNTNAGNFIHGDAPFSQMTLAALIETQAEGEQGSMQYKPSGFRSHSE
SHQHNNQASFSTASTPWRQRESSLEDPSGSVSTASRDTHSQKPTRPPRKH
GCKRGPALLTFSVKD*
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mRNA from alignment at scaffold_24:116287..117564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8377 ID=mRNA_8377|Name=jgi.p|Nanoce1779_2|194049|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_24:116287..117564- (Nannochloropsis oceanica)
TTTCAACCCCGACGAGATGAGTTAGAATCCGGAAGTCCTCAAGATCCTAC
CTCGTGCGCCCAAGTACGCGAAGTGTCTGAGCATGGACTCTGACGCTGAG
AGGGGCACAGATGAGGCAGGGGCGCCCTCGTACTCGTCATCAAATGGGCC
GTCCTTGCCCTTGCATGTGCTCTCCCCCGCACTCTTAGACCATGTCGGGC
CTCCGAGCCGACACTGCAGCCAATGGAAATCCTCAGAGATGACGCGTCAG
GATGGGCAGTCGGATACTGGTAATTATTATCGGCGCCGCTCCACCTCGGC
CTCAAACGACACCTCCACCCATAACACTTCACGCTTCCGTCGAAGCAGCT
GCGCCTCCACAGCGGGCGGCAGTGATGCAGACGATGACGATGAAAACTGG
AGCAATATCTACGTCGACGACGACTCTGATGACTCGGACTGTGACTCAAT
AGGAAACCCCTGTATGTCCCGGCGCTTTTCGGCGGTCATGCCGCATCGCG
TCTGGGCCTCTCCTCTCAAAACTTCCACGGCAGGCCGTACTAGTAACACC
AATGCAGGCAACTTCATCCATGGCGATGCACCTTTCTCCCAGATGACACT
GGCAGCCTTGATTGAAACGCAAGCGGAAGGCGAACAAGGCAGCATGCAAT
ACAAGCCAAGTGGCTTTCGCTCCCATAGTGAGTCTCACCAGCACAACAAC
CAAGCAAGTTTCTCCACAGCATCCACGCCTTGGCGGCAGCGTGAATCATC
GCTGGAAGACCCCAGCGGCAGTGTCAGCACTGCAAGCAGAGACACTCACT
CCCAGAAACCGACGCGGCCCCCTAGAAAGCATGGCTGCAAGAGGGGTCCG
GCCCTACTTACATTTTCGGTCAAAGATTGAGATGGCTATTCGCACAGCCT
CGGCAGCAGGATTTTCCACAGGCATCATGTTATTTGTGTGGAGCTGGGCA
CACTCTTTATCCTGGTTTGGAGTCACGCTTGCCATCTCAGGAACGCGAAA
GAGCTTGGGAGAAACATTTATGGCAGCATTTGATTTTTGGAAAGGCGGTT
TGCTGGTCTTGCCATGGATCTACGCCCTGAATGTGGTGCGCTCCCACGCT
ATCCTGACTTTGTTGGGGCTTTTCGTGTCTCTGATATTTATAATTTGGTT
CCCGGGTGTCTCGGATTCGGGTAAGAGCATGGCGACCATTTTCCTAACAG
TGGTCGTCTTGACAGGTGACAAAGACCCGGTAGTGCATTACAACAGTCTT
GTACGCGACCTGTACATGACAATGATCA
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Coding sequence (CDS) from alignment at scaffold_24:116287..117564-

>mRNA_8377 ID=mRNA_8377|Name=jgi.p|Nanoce1779_2|194049|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_24:116287..117564- (Nannochloropsis oceanica)
ATGGACTCTGACGCTGAGAGGGGCACAGATGAGGCAGGGGCGCCCTCGTA
CTCGTCATCAAATGGGCCGTCCTTGCCCTTGCATGTGCTCTCCCCCGCAC
TCTTAGACCATGTCGGGCCTCCGAGCCGACACTGCAGCCAATGGAAATCC
TCAGAGATGACGCGTCAGGATGGGCAGTCGGATACTGGTAATTATTATCG
GCGCCGCTCCACCTCGGCCTCAAACGACACCTCCACCCATAACACTTCAC
GCTTCCGTCGAAGCAGCTGCGCCTCCACAGCGGGCGGCAGTGATGCAGAC
GATGACGATGAAAACTGGAGCAATATCTACGTCGACGACGACTCTGATGA
CTCGGACTGTGACTCAATAGGAAACCCCTGTATGTCCCGGCGCTTTTCGG
CGGTCATGCCGCATCGCGTCTGGGCCTCTCCTCTCAAAACTTCCACGGCA
GGCCGTACTAGTAACACCAATGCAGGCAACTTCATCCATGGCGATGCACC
TTTCTCCCAGATGACACTGGCAGCCTTGATTGAAACGCAAGCGGAAGGCG
AACAAGGCAGCATGCAATACAAGCCAAGTGGCTTTCGCTCCCATAGTGAG
TCTCACCAGCACAACAACCAAGCAAGTTTCTCCACAGCATCCACGCCTTG
GCGGCAGCGTGAATCATCGCTGGAAGACCCCAGCGGCAGTGTCAGCACTG
CAAGCAGAGACACTCACTCCCAGAAACCGACGCGGCCCCCTAGAAAGCAT
GGCTGCAAGAGGGGTCCGGCCCTACTTACATTTTCGGTCAAAGATTGA
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Synonyms
Publications