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Properties
| Property Name | Value |
|---|
| TranscriptId | 601897 |
| Track | FilteredModels2 |
| ProteinId | 601811 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:110593..112912 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8375 ID=mRNA_8375|Name=jgi.p|Nanoce1779_2|601811|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp
GATATGACAGCCGTCTCGATCCTTTCCATCTAGCCATCACCCTGACTTTC
TGATGGATTTTCTTTTCCGCTTAAATGCTTTTGAGTCCAGGCCATTGAGT
CCAGGGGGGCGTTTGAAGTGAGTCGGTAAGTCGATTTGGTTCTTTTCCTC
AAGAGAGTGTACTTTTGTATTTTCTGTGAGATCGAATCAATCATGTCCTC
CCCCTACTCCCCTTACACGGCGCAAGGATATGTTTCACCATTGCCAATGC
CCATGCCTACTTTATCACAAATATTCGTCAGCAAGTAACCTTGACTTGAT
GTGTTCTAAATTATAATCGTCGTCGTGCGTTGCCCCCAGAGGTATCAAGT
AAGTGCCAATGGGCCAACGGCTGTGCTACGAGCCTCGACGTTGAGGTCCA
GAGCGCGTCACAAACCTACAGCCTCTATTTATCTCGTGACACCTCCGTTA
ATTGCAATAGATGGCAATATTCCTAGTCACCATAATTTCCGCGATTTTGG
CTCGATTTTGATTTCATCTTGACCCCTTTTTTAATTCCACCATCCTACCC
ACCGACCAAGACGTCACAAAACCCCCGCCAGCCGCCCCACACAAACGAGG
CTTCTCCAGCTTGTCCCGAGGGAATGACGACAACTCGTAGGCTTGTCTGT
ACTGTAATCCGTGGAGGTCTCGCCATGCTGCTCAGTAGCACTTGCCGCTC
CTCCACCACTCCCACCCCCCTCGCCGCTGCGTTCCTTCATCGCCACTACC
AAACGACAGCTTCCACTTGCAGCAGCAGGAGCAGCAGCGGGAGCAGCAGC
AGCAGCAGGAGCAGCAGTACACGGACCACCAGCCCTTCCGCGCCACCAAA
GTCCTTGTCTTCAACATCTGTCACCCCTTTTTTCGCTGGTTCGTCTACCT
CCACTTCTTCCTCCTGGTCCCCTCCCATTTTCATACCGGACGCCCAAACC
CTCTACCCGCTCTCCGCCTTTGCCCTTCCTCAATACCTCCTTGATTCTGG
AGAACTCGAAGGTGTTTTGTTGCCCGCTGGGATGATCCAAGATCGGATCG
ATAAAATTGCAGAAGACTTGCTTCTGAACTTGAAAATGAGCCACAGCAGC
AGGAGTAGTGATCTATACGAAGTCCACCTCCTCTGTGTTTTAAAGGGCGC
GGGTCGGTTCTATCACTTCTTATTCGATTCTCTCCGTCGTCAGGCCCAGG
CGTCGCGGACGCCCTTACTGATCAAGATGGAGTACATCAAGGTCAGGAGC
TATTCAGGCATGCAAAGTACCGGTATGGTGGATGTGAGTGGCTGTAAGCT
CGACGAGCTGAAAGACAAAAATGTCGTGATTGTGGAGGATATTATAGATA
CGGGCAACACTCTTCGGAAACTTGTCCCTCTTCTTCTCTCCCACCATCTC
GCCTCGCTTCGCGTCCTTGCCCTTTTTCAAAAGCGGGTCTTGTCCTCTCA
AGGACTCAGTAAGGCAGGGAAGGAGGGCGAGGCAATCCCCAATTTGGGCG
GGGTAGGCTTCTCGCTGCCCGATAAGTTTGCGGTAGGCTACGGCATGGAC
TTGGAGGAGCACTACCGAGACGTGGAGCATCTATGCCTGCTCAGTCAGAA
GGGAATTGAGAAACACCTGGGAAAGAAAGAATGAAGGTGGCGTTGACTTC
CTTCCTCCCTCCCTACCTCCCTCCCTATCTACCTACCTACCTTCTTCCCT
ACCTCCCTTCCCCCATCGCTCTCTCCCTCGAACTTACGAGAATAATTTCA
AGATCTGGCGTAGTGTGTGATTGACAGGAATGCTCGTTTCCTGTGGAGGG
ATTCAGGCATGGCCCCCTCCCCTCCCAGGCATCCCTTCTTGTCCCTCTAC
GTTCACTGGTGTCGAGGACATGCACACACATTCATGAAGTGGACAAAAAC
AAGAGCAAGATGAAACATTAATTGCCCGTTTGCGCGGCGGAGAAACATCA
AAAGAAGGAAGGAGAACAACAATAAGAAGAACAAGAAGAACAAGAAG back to topprotein sequence of jgi.p|Nanoce1779_2|601811 >mRNA_8375-protein ID=mRNA_8375-protein|Name=jgi.p|Nanoce1779_2|601811|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MTTTRRLVCTVIRGGLAMLLSSTCRSSTTPTPLAAAFLHRHYQTTASTCS
SRSSSGSSSSSRSSSTRTTSPSAPPKSLSSTSVTPFFAGSSTSTSSSWSP
PIFIPDAQTLYPLSAFALPQYLLDSGELEGVLLPAGMIQDRIDKIAEDLL
LNLKMSHSSRSSDLYEVHLLCVLKGAGRFYHFLFDSLRRQAQASRTPLLI
KMEYIKVRSYSGMQSTGMVDVSGCKLDELKDKNVVIVEDIIDTGNTLRKL
VPLLLSHHLASLRVLALFQKRVLSSQGLSKAGKEGEAIPNLGGVGFSLPD
KFAVGYGMDLEEHYRDVEHLCLLSQKGIEKHLGKKE* back to topmRNA from alignment at scaffold_24:110593..112912- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8375 ID=mRNA_8375|Name=jgi.p|Nanoce1779_2|601811|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at scaffold_24:110593..112912- (Nannochloropsis oceanica)
GATATGACAGCCGTCTCGATCCTTTCCATCTAGCCATCACCCTGACTTTC
TGATGGATTTTCTTTTCCGCTTAAATGCTTTTGAGTCCAGGCCATTGAGT
CCAGGGGGGCGTTTGAAGTGAGTCGGTAAGTCGATTTGGTTCTTTTCCTC
AAGAGAGTGTACTTTTGTATTTTCTGTGAGATCGAATCAATCATGTCCTC
CCCCTACTCCCCTTACACGGCGCAAGGATATGTTTCACCATTGCCAATGC
CCATGCCTACTTTATCACAAATATTCGTCAGCAAGTAACCTTGACTTGAT
GTGTTCTAAATTATAATCGTCGTCGTGCGTTGCCCCCAGAGGTATCAAGT
AAGTGCCAATGGGCCAACGGCTGTGCTACGAGCCTCGACGTTGAGGTCCA
GAGCGCGTCACAAACCTACAGCCTCTATTTATCTCGTGACACCTCCGTTA
ATTGCAATAGATGGCAATATTCCTAGTCACCATAATTTCCGCGATTTTGG
CTCGATTTTGATTTCATCTTGACCCCTTTTTTAATTCCACCATCCTACCC
ACCGACCAAGACGTCACAAAACCCCCGCCAGCCGCCCCACACAAACGAGG
CTTCTCCAGCTTGTCCCGAGGGAATGACGACAACTCGTAGGCTTGTCTGT
ACTGTAATCCGTGGAGGTCTCGCCATGCTGCTCAGTAGCACTTGCCGCTC
CTCCACCACTCCCACCCCCCTCGCCGCTGCGTTCCTTCATCGCCACTACC
AAACGACAGCTTCCACTTGCAGCAGCAGGAGCAGCAGCGGGAGCAGCAGC
AGCAGCAGGAGCAGCAGTACACGGACCACCAGCCCTTCCGCGCCACCAAA
GTCCTTGTCTTCAACATCTGTCACCCCTTTTTTCGCTGGTTCGTCTACCT
CCACTTCTTCCTCCTGGTCCCCTCCCATTTTCATACCGGACGCCCAAACC
CTCTACCCGCTCTCCGCCTTTGCCCTTCCTCAATACCTCCTTGATTCTGG
AGAACTCGAAGGTGTTTTGTTGCCCGCTGGGATGATCCAAGATCGGATCG
ATAAAATTGCAGAAGACTTGCTTCTGAACTTGAAAATGAGCCACAGCAGC
AGGAGTAGTGATCTATACGAAGTCCACCTCCTCTGTGTTTTAAAGGGCGC
GGGTCGGTTCTATCACTTCTTATTCGATTCTCTCCGTCGTCAGGCCCAGG
CGTCGCGGACGCCCTTACTGATCAAGATGGAGTACATCAAGGTCAGGAGC
TATTCAGGCATGCAAAGTACCGGTATGGTGGATGTGAGTGGCTGTAAGCT
CGACGAGCTGAAAGACAAAAATGTCGTGATTGTGGAGGATATTATAGATA
CGGTACGCGCTTCTTGTCGCCTTTCCTCCTTCCCTCCCTCCCTGCGTGAT
TTTCATAGATTGCATACCACGAGCATCGAGTCTCACCCTCCCTGACTCCC
TCCCTCCCTCCCTCCCTCCCTCTATCCCTCCACCCCTTCTCTTCGCAGGG
CAACACTCTTCGGAAACTTGTCCCTCTTCTTCTCTCCCACCATCTCGCCT
CGCTTCGCGTCCTTGCCCTTTTTCAAAAGCGGGTCTTGTCCTCTCAAGGA
CTCAGTAAGGCAGGGAAGGAGGGCGAGGCAATCCCCAATTTGGGCGGGGT
AGGCTTCTCGCTGCCCGATAAGGTAACGAAGAAAGGAAGGTAGGAAGGAG
GGAGGGTAGATGCTGAGTATGATTGTGTGGGCTTGGTATCAACTCACTCA
CCTGTTCGCCCTTCCCTCCCTCCATCCCTCCATTCCTCCATCCCTCCATT
CCTTCCTCCCTTCCTCCCTCCCTTCCTCCTTTCCTCTCTCCATTCCAAGT
TTGCGGTAGGCTACGGCATGGACTTGGAGGAGCACTACCGAGACGTGGAG
CATCTATGCCTGCTCAGTCAGAAGGGAATTGAGAAACACCTGGGAAAGAA
AGAATGAAGGTGGCGTTGACTTCCTTCCTCCCTCCCTACCTCCCTCCCTA
TCTACCTACCTACCTTCTTCCCTACCTCCCTTCCCCCATCGCTCTCTCCC
TCGAACTTACGAGAATAATTTCAAGATCTGGCGTAGTGTGTGATTGACAG
GAATGCTCGTTTCCTGTGGAGGGATTCAGGCATGGCCCCCTCCCCTCCCA
GGCATCCCTTCTTGTCCCTCTACGTTCACTGGTGTCGAGGACATGCACAC
ACATTCATGAAGTGGACAAAAACAAGAGCAAGATGAAACATTAATTGCCC
GTTTGCGCGGCGGAGAAACATCAAAAGAAGGAAGGAGAACAACAATAAGA
AGAACAAGAAGAACAAGAAG back to topCoding sequence (CDS) from alignment at scaffold_24:110593..112912- >mRNA_8375 ID=mRNA_8375|Name=jgi.p|Nanoce1779_2|601811|organism=Nannochloropsis oceanica|type=CDS|length=3033bp|location=Sequence derived from alignment at scaffold_24:110593..112912- (Nannochloropsis oceanica)
TTTGCGGTAGGCTACGGCATGGACTTGGAGGAGCACTACCGAGACGTGGA
GCATCTATGCCTGCTCAGTCAGAAGGGAATTGAGAAACACCTGGGAAAGA
AAGAATGAGGCAACACTCTTCGGAAACTTGTCCCTCTTCTTCTCTCCCAC
CATCTCGCCTCGCTTCGCGTCCTTGCCCTTTTTCAAAAGCGGGTCTTGTC
CTCTCAAGGACTCAGTAAGGCAGGGAAGGAGGGCGAGGCAATCCCCAATT
TGGGCGGGGTAGGCTTCTCGCTGCCCGATAAGATGACGACAACTCGTAGG
CTTGTCTGTACTGTAATCCGTGGAGGTCTCGCCATGCTGCTCAGTAGCAC
TTGCCGCTCCTCCACCACTCCCACCCCCCTCGCCGCTGCGTTCCTTCATC
GCCACTACCAAACGACAGCTTCCACTTGCAGCAGCAGGAGCAGCAGCGGG
AGCAGCAGCAGCAGCAGGAGCAGCAGTACACGGACCACCAGCCCTTCCGC
GCCACCAAAGTCCTTGTCTTCAACATCTGTCACCCCTTTTTTCGCTGGTT
CGTCTACCTCCACTTCTTCCTCCTGGTCCCCTCCCATTTTCATACCGGAC
GCCCAAACCCTCTACCCGCTCTCCGCCTTTGCCCTTCCTCAATACCTCCT
TGATTCTGGAGAACTCGAAGGTGTTTTGTTGCCCGCTGGGATGATCCAAG
ATCGGATCGATAAAATTGCAGAAGACTTGCTTCTGAACTTGAAAATGAGC
CACAGCAGCAGGAGTAGTGATCTATACGAAGTCCACCTCCTCTGTGTTTT
AAAGGGCGCGGGTCGGTTCTATCACTTCTTATTCGATTCTCTCCGTCGTC
AGGCCCAGGCGTCGCGGACGCCCTTACTGATCAAGATGGAGTACATCAAG
GTCAGGAGCTATTCAGGCATGCAAAGTACCGGTATGGTGGATGTGAGTGG
CTGTAAGCTCGACGAGCTGAAAGACAAAAATGTCGTGATTGTGGAGGATA
TTATAGATACGTTTGCGGTAGGCTACGGCATGGACTTGGAGGAGCACTAC
CGAGACGTGGAGCATCTATGCCTGCTCAGTCAGAAGGGAATTGAGAAACA
CCTGGGAAAGAAAGAATGAGGCAACACTCTTCGGAAACTTGTCCCTCTTC
TTCTCTCCCACCATCTCGCCTCGCTTCGCGTCCTTGCCCTTTTTCAAAAG
CGGGTCTTGTCCTCTCAAGGACTCAGTAAGGCAGGGAAGGAGGGCGAGGC
AATCCCCAATTTGGGCGGGGTAGGCTTCTCGCTGCCCGATAAGATGACGA
CAACTCGTAGGCTTGTCTGTACTGTAATCCGTGGAGGTCTCGCCATGCTG
CTCAGTAGCACTTGCCGCTCCTCCACCACTCCCACCCCCCTCGCCGCTGC
GTTCCTTCATCGCCACTACCAAACGACAGCTTCCACTTGCAGCAGCAGGA
GCAGCAGCGGGAGCAGCAGCAGCAGCAGGAGCAGCAGTACACGGACCACC
AGCCCTTCCGCGCCACCAAAGTCCTTGTCTTCAACATCTGTCACCCCTTT
TTTCGCTGGTTCGTCTACCTCCACTTCTTCCTCCTGGTCCCCTCCCATTT
TCATACCGGACGCCCAAACCCTCTACCCGCTCTCCGCCTTTGCCCTTCCT
CAATACCTCCTTGATTCTGGAGAACTCGAAGGTGTTTTGTTGCCCGCTGG
GATGATCCAAGATCGGATCGATAAAATTGCAGAAGACTTGCTTCTGAACT
TGAAAATGAGCCACAGCAGCAGGAGTAGTGATCTATACGAAGTCCACCTC
CTCTGTGTTTTAAAGGGCGCGGGTCGGTTCTATCACTTCTTATTCGATTC
TCTCCGTCGTCAGGCCCAGGCGTCGCGGACGCCCTTACTGATCAAGATGG
AGTACATCAAGGTCAGGAGCTATTCAGGCATGCAAAGTACCGGTATGGTG
GATGTGAGTGGCTGTAAGCTCGACGAGCTGAAAGACAAAAATGTCGTGAT
TGTGGAGGATATTATAGATACGTTTGCGGTAGGCTACGGCATGGACTTGG
AGGAGCACTACCGAGACGTGGAGCATCTATGCCTGCTCAGTCAGAAGGGA
ATTGAGAAACACCTGGGAAAGAAAGAATGAGGCAACACTCTTCGGAAACT
TGTCCCTCTTCTTCTCTCCCACCATCTCGCCTCGCTTCGCGTCCTTGCCC
TTTTTCAAAAGCGGGTCTTGTCCTCTCAAGGACTCAGTAAGGCAGGGAAG
GAGGGCGAGGCAATCCCCAATTTGGGCGGGGTAGGCTTCTCGCTGCCCGA
TAAGATGACGACAACTCGTAGGCTTGTCTGTACTGTAATCCGTGGAGGTC
TCGCCATGCTGCTCAGTAGCACTTGCCGCTCCTCCACCACTCCCACCCCC
CTCGCCGCTGCGTTCCTTCATCGCCACTACCAAACGACAGCTTCCACTTG
CAGCAGCAGGAGCAGCAGCGGGAGCAGCAGCAGCAGCAGGAGCAGCAGTA
CACGGACCACCAGCCCTTCCGCGCCACCAAAGTCCTTGTCTTCAACATCT
GTCACCCCTTTTTTCGCTGGTTCGTCTACCTCCACTTCTTCCTCCTGGTC
CCCTCCCATTTTCATACCGGACGCCCAAACCCTCTACCCGCTCTCCGCCT
TTGCCCTTCCTCAATACCTCCTTGATTCTGGAGAACTCGAAGGTGTTTTG
TTGCCCGCTGGGATGATCCAAGATCGGATCGATAAAATTGCAGAAGACTT
GCTTCTGAACTTGAAAATGAGCCACAGCAGCAGGAGTAGTGATCTATACG
AAGTCCACCTCCTCTGTGTTTTAAAGGGCGCGGGTCGGTTCTATCACTTC
TTATTCGATTCTCTCCGTCGTCAGGCCCAGGCGTCGCGGACGCCCTTACT
GATCAAGATGGAGTACATCAAGGTCAGGAGCTATTCAGGCATGCAAAGTA
CCGGTATGGTGGATGTGAGTGGCTGTAAGCTCGACGAGCTGAAAGACAAA
AATGTCGTGATTGTGGAGGATATTATAGATACG back to top
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