jgi.p|Nanoce1779_2|632789, mRNA_8373 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632789
Unique Name	mRNA_8373
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	837
Alignment location	scaffold_24:99893..103370 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632875
Track	FilteredModels2
ProteinId	632789

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:99893..103370 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632789	gene_8373	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632789	mRNA_8373-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8373	CDS_8373	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:99893..103370-
coding sequence from alignment at scaffold_24:99893..103370-

mRNA sequence

>mRNA_8373 ID=mRNA_8373|Name=jgi.p|Nanoce1779_2|632789|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
GTCAGCCTCTCGTCGTTTGCCTCCCTTGTTCTATGCATTCCTTCTGTCCT
TGCTCACTTTTTTGCTTTTCCAATGCTTGGTGTGGGTGCCTATTTGGCTG
GCAGGTCTATTGCATGCGCAGACATATCCACTCCCACGAAGCGCGTGGAT
GGCTGGAAAGGGGAGAGGGGGGTCAAGCCGAGCAGAGAAGAAAGACCCCT
TTCATGCCTATGTCAATGCCCTTGTCTTTGTCCACGCAAGACACACAGGC
AGACGAGGGACTGCACTGATATGGAAGAGTCGTGATAAATTTGCCTCCAA
CACCACCACCACGAGCCTTGTCCAAGTGCAAAGCCAGCCTCCCCACTCCC
CCTTCCCTCTCCACCTCACGCTCATCAATCATCATTCCCCTCTCTTCTCA
CCCTTTCATCAACCCCTACACTCATACAACACAATTAAAGTAGAAAAACC
ATGTCCAAGCTGAACTCGGAGCTCCTCGCCCAGTGCGTGGAGGACCTGTT
GGCCTACTCCCAAGGGAAGACCATTACCAAGGACGGCGTGGACAAGTACA
CTGTCGATGACATGAAGAAATGGAACAAGAACAAGAAAATCATCAAAAAG
TTCACCAAGAAGGCCGGCAAGTTCCCTACCACCATCGCGGGCGGGGACAA
GCTTTTGGAGAAGATCGATACCGTCAAGGCCACTATCAAGTTCCAGATGA
AGAAGGTCATGTGCATGTCGGTCGCCATTGGTCACGTGAAGATGAGCAAG
GACGAGATCGCGTTGAATGTGCAGCTGGCCTCCAACTTCCTCGCCTCCCT
ACTCAAGAAAAACTGGCAGAACATCAAGATTTGTTGA

protein sequence of jgi.p|Nanoce1779_2|632789

>mRNA_8373-protein ID=mRNA_8373-protein|Name=jgi.p|Nanoce1779_2|632789|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MSKLNSELLAQCVEDLLAYSQGKTITKDGVDKYTVDDMKKWNKNKKIIKK
FTKKAGKFPTTIAGGDKLLEKIDTVKATIKFQMKKVMCMSVAIGHVKMSK
DEIALNVQLASNFLASLLKKNWQNIKIC*

mRNA from alignment at scaffold_24:99893..103370-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8373 ID=mRNA_8373|Name=jgi.p|Nanoce1779_2|632789|organism=Nannochloropsis oceanica|type=mRNA|length=3478bp|location=Sequence derived from alignment at scaffold_24:99893..103370- (Nannochloropsis oceanica)
GTCAGCCTCTCGTCGTTTGCCTCCCTTGTTCTATGCATTCCTTCTGTCCT
TGCTCACTTTTTTGCTTTTCCAATGCTTGGTGTGGGTGCCTATTTGGCTG
GCAGGTCTATTGCATGCGCAGACATATCCACTCCCACGAAGCGCGTGGAT
GGCTGGAAAGGGGAGAGGGGGGTCAAGCCGAGCAGAGAAGAAAGACCCCT
TTCATGCCTATGTCAATGCCCTTGTCTTTGTCCACGCAAGACACACAGGC
AGACGAGGGACTGCACTGATATGGAAGAGTCGTGATAAATTTGCCTCCAA
CACCACCACCACGAGCCTTGTCCAAGTGCAAAGCCAGCCTCCCCACTCCC
CCTTCCCTCTCCACCTCACGCTCATCAATCATCATTCCCCTCTCTTCTCA
CCCTTTCATCAACCCCTACACTCATACAACACAATTAAAGTAGAAAAACC
ATGTCCAAGCTGAACTCGGAGCTCCTCGCCCAGTGCGTGGAGGACCTGTT
GGCCTACTCCCAAGGGAAGACCATTACCAAGGACGGTGAGTGTGACACGC
TGGAGGAAGGGAGGGTGGGGTAGAAGCGAACGCAAGGAACGGGAGGGTCC
GTAGACTGTGTGAGGAAAGAGCGCGTGGCAAGACGACTGTGGATGTGAGT
GGGCATACTTTCAAGAGAAGACCGTTGGAAAAAGCTGTGACAGCAACCCG
AGCTCGACGACGGAAGCAAGGAGGGGTGGGTGGGGTGGGAAGAGAGCTCC
CTTGGTCTACACAGGGCTATAGCAAAGAAGCATCACTGCAGTAATAGAGG
TGTTTTGACGAGCAAGGAATCAAGGGCGGATAGATGGCTGGCGGAAGGAC
GAAGGGAAGGAAAATGCGACGGAAATCAAGAAGGCATCATCCATCTACCC
ATTCTCACCCTCCCTCCCTCCCTCCTTCATTCCTTTCCTTTAATTTCAGG
CGAGGAGGTGAAGGGCAAGATCCGCAACTTTAATGAGACGATTGAGCTGC
AGGTAGGGAGGGAGGAAAGGAGGGAGGGAAGGCGTGAAAAAGGAACGTGG
AATGCAGCATCAGGAGGGAAGGACAAGAAGACACAACCAGCGGAGCGGCT
TGAGCAGCTGCAGGAAGACGAGAAGGCAGGGGGCCGGTACTGCTGATGTG
GCATGGCGATTGATTTGGAATGGAAAATACTTGTCGATAACATTCTTATG
GACCTAGGAAGGGGATACCTCACCCACCCTCCCTCCCTTTCCCCTTCTTC
CCCTCCCTCTAGATCGCCCTCAAGAACTACGATCCCCAGCGGGACAAGCG
TTTTTCGGGTGTCTTCAAGCTGCCGGTGGTGCCCAAGTACGTGAACGGGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAAAGGGAACAAAAGAAG
TGTTGGGAAGGAGGGCGGTGAAAGTGGCAGAATGATGGAATGGGCTTCTC
GACAACAATTATCAGAGAGAGCGAAGAAGACGGAGAATCGGTAAGGATGG
CTTTCAGGAAGTGTCATGCATTCTTACCTTCCTCTTCCTCCCTCTGTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCCTAACATGACCTTGGCGGT
GCTGGGTAACGCCCTTCACTGCGAGGAGGCCGAAAAGATCGGTAAGCCAC
CAGAAGGAGGGATGGAGGAAGGAAGGAGGGAGGGAGGGACTGTGGAATGG
GAGAAGAGGATAAAGCAGCAGCGGGGTAGTGTGCTCTATCAGCGAGAGGC
TTTCGGGCCTGTGGACTAGGTCTCTCACCCCTCCCTCCCTCCCTCCTTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTTTCCTCCCTCCAGGCGTGGACAAGTACACTGTCGATGAC
ATGAAGAAATGGAACAAGAACAAGAAAATCATCAAAAAGTTCACCAAGAA
GGTACGCCCTCCTTTCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCTTCCACCCACCCATTTCTATTATGGTAACTCTCTGT
TGTTGCCGCCCTTTCCATCCTCTTCCCCCCCTCCCTCCCCCTCCTCTTCT
GTCCTCTTTCGCCCTATCCGCGTCGCGGAGGTTATCATTCTGACACCCAT
ATCCCTCATCTGCTATCGAAGATAAAATAAGACACGTCCGCTCACCTTCC
TCCCCTCCCTCCCCCCCTCGACAGTACAACGCCTTCCTGGCCTCCGACTC
CCTCATCAAGCAAATTCCTCGCCTTCTCGGCCCGTCTCTGACCAAGGTCC
GTCAGAAAACAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGGTGT
TTGTCCCCTTCCTTTCCTCAGTTCCCGCAACGCGTTGGAATCATAGGCCC
CCTGTCCCCCCCTCCCTTCTTCCCTTTCTTCCTTCCTTCCTTTCCTCCCC
CCTCCCTCACGGCACCAACCATCCTCTTACCCCTCCCTCCCTTTCTCCCT
CCCTCCCTCCCTCCCTCAGGCCGGCAAGTTCCCTACCACCATCGCGGGCG
GGGACAAGCTTTTGGAGAAGATCGATACCGTCAAGGCCACTATCAAGTTC
CAGATGAAGAAGGTACACGCTCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTGTTTGTCGAGCCCATTCGAGTGACGCCAACATCTCCCTTC
TCCCGACCAGATGATGCTCACTCACCCACCCCTGAACCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCTTCAGGTCATGTGCATGTCGGTCGCCATTGGTC
ACGTGAAGATGAGCAAGGACGAGATCGCGTTGAATGTGCAGCTGGCCTCC
AACTTCCTCGCCTCCCTACTCAAGAAAAACTGGCAGAACATCAAGGTCCG
TCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCACTAGCTCTCACAGTGT
GCCGCTTGCCTCCAACTTCCTCGTCGCCCTCCTCGCAAACAACGGGTGCT
CTCCCCTCCCTCCCTCCCTCCCTCCCTCCCATATGTAACATCCCGTCACC
AACAGTGTAATCGTCGTTCCTCCCCCGGCACTCACCCCCTCCCTCTCTCC
CTCCCTCTCTCCCTCCTTCCCTCCCATCACCAGGTGCTGTACATCAAGAG
CACCATGGGTCCCCGATTCCAGATTTACTTCTAAGCGTCTGCGTAGGAAG
GGAGGGAAGGAGGGGAGGAGGGACGAGTCGTCAATCTCGAGCTCTGGCTG
TGTCCAGGCCTGATTTTTTCCACACGTAGGTGTGAAGGGAGGGAGGGAGG
GAGGGCAAGGAGAGGCGTCGTGGATGCCGGCCTTCATGATCGTAGTCGTC
GTTGGTGACGAAGGGTAATGGAGAAAAAAGAAAAAGAAAAAAAGGAGAAA
ATAAACATACAGACCGTACATATCACCAATGCATATGCACATATACATAT
GTATGATATAATCTTGCAGATTTGTTGA

Coding sequence (CDS) from alignment at scaffold_24:99893..103370-

>mRNA_8373 ID=mRNA_8373|Name=jgi.p|Nanoce1779_2|632789|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at scaffold_24:99893..103370- (Nannochloropsis oceanica)
ATTTGTTGAGTCATGTGCATGTCGGTCGCCATTGGTCACGTGAAGATGAG
CAAGGACGAGATCGCGTTGAATGTGCAGCTGGCCTCCAACTTCCTCGCCT
CCCTACTCAAGAAAAACTGGCAGAACATCAAGGCCGGCAAGTTCCCTACC
ACCATCGCGGGCGGGGACAAGCTTTTGGAGAAGATCGATACCGTCAAGGC
CACTATCAAGTTCCAGATGAAGAAGGCGTGGACAAGTACACTGTCGATGA
CATGAAGAAATGGAACAAGAACAAGAAAATCATCAAAAAGTTCACCAAGA
AGATGTCCAAGCTGAACTCGGAGCTCCTCGCCCAGTGCGTGGAGGACCTG
TTGGCCTACTCCCAAGGGAAGACCATTACCAAGGACGATTTGTTGAGTCA
TGTGCATGTCGGTCGCCATTGGTCACGTGAAGATGAGCAAGGACGAGATC
GCGTTGAATGTGCAGCTGGCCTCCAACTTCCTCGCCTCCCTACTCAAGAA
AAACTGGCAGAACATCAAGGCCGGCAAGTTCCCTACCACCATCGCGGGCG
GGGACAAGCTTTTGGAGAAGATCGATACCGTCAAGGCCACTATCAAGTTC
CAGATGAAGAAGGCGTGGACAAGTACACTGTCGATGACATGAAGAAATGG
AACAAGAACAAGAAAATCATCAAAAAGTTCACCAAGAAGATGTCCAAGCT
GAACTCGGAGCTCCTCGCCCAGTGCGTGGAGGACCTGTTGGCCTACTCCC
AAGGGAAGACCATTACCAAGGACGATTTGTTGAGTCATGTGCATGTCGGT
CGCCATTGGTCACGTGAAGATGAGCAAGGACGAGATCGCGTTGAATGTGC
AGCTGGCCTCCAACTTCCTCGCCTCCCTACTCAAGAAAAACTGGCAGAAC
ATCAAGGCCGGCAAGTTCCCTACCACCATCGCGGGCGGGGACAAGCTTTT
GGAGAAGATCGATACCGTCAAGGCCACTATCAAGTTCCAGATGAAGAAGG
CGTGGACAAGTACACTGTCGATGACATGAAGAAATGGAACAAGAACAAGA
AAATCATCAAAAAGTTCACCAAGAAGATGTCCAAGCTGAACTCGGAGCTC
CTCGCCCAGTGCGTGGAGGACCTGTTGGCCTACTCCCAAGGGAAGACCAT
TACCAAGGACGATTTGTTGAGTCATGTGCATGTCGGTCGCCATTGGTCAC
GTGAAGATGAGCAAGGACGAGATCGCGTTGAATGTGCAGCTGGCCTCCAA
CTTCCTCGCCTCCCTACTCAAGAAAAACTGGCAGAACATCAAGGCCGGCA
AGTTCCCTACCACCATCGCGGGCGGGGACAAGCTTTTGGAGAAGATCGAT
ACCGTCAAGGCCACTATCAAGTTCCAGATGAAGAAGGCGTGGACAAGTAC
ACTGTCGATGACATGAAGAAATGGAACAAGAACAAGAAAATCATCAAAAA
GTTCACCAAGAAGATGTCCAAGCTGAACTCGGAGCTCCTCGCCCAGTGCG
TGGAGGACCTGTTGGCCTACTCCCAAGGGAAGACCATTACCAAGGACGAT
TTGTTGAGTCATGTGCATGTCGGTCGCCATTGGTCACGTGAAGATGAGCA
AGGACGAGATCGCGTTGAATGTGCAGCTGGCCTCCAACTTCCTCGCCTCC
CTACTCAAGAAAAACTGGCAGAACATCAAGGCCGGCAAGTTCCCTACCAC
CATCGCGGGCGGGGACAAGCTTTTGGAGAAGATCGATACCGTCAAGGCCA
CTATCAAGTTCCAGATGAAGAAGGCGTGGACAAGTACACTGTCGATGACA
TGAAGAAATGGAACAAGAACAAGAAAATCATCAAAAAGTTCACCAAGAAG
ATGTCCAAGCTGAACTCGGAGCTCCTCGCCCAGTGCGTGGAGGACCTGTT
GGCCTACTCCCAAGGGAAGACCATTACCAAGGACG

Synonyms

Publications