jgi.p|Nanoce1779_2|601782, mRNA_8371 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601782
Unique Name	mRNA_8371
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1364
Alignment location	scaffold_24:96757..98120 -

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Properties


Property Name	Value
TranscriptId	601868
Track	FilteredModels2
ProteinId	601782

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:96757..98120 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601782	gene_8371	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601782	mRNA_8371-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8371	CDS_8371	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:96757..98120-
coding sequence from alignment at scaffold_24:96757..98120-

mRNA sequence

>mRNA_8371 ID=mRNA_8371|Name=jgi.p|Nanoce1779_2|601782|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp
GGCATGATGACAATGGGCTTCTAATACAGCACTACCGCCGCTGCTGGAAG
CAACAAAATGGTCCTGAGGAAAGGAGGAAGCAAAGAAGAAAGGGTGGAAG
TGAGGGGCAGCTGGGTAGGCGTGTGATTGTGTCGGCGGGACTCAGAATGT
TCGGAGATAGCAGTGCGACATCGCGGGGGGGCGGGGAGGCAAGTTGTCAT
GGCGGGCGAGATTTGTAATGATGACGTCCGCATTTTCCCATTGCATACAG
ACATCGAAGAGTATCAAAACGTCTGTGTGGTGCTCTCAGCGGGAGGATGG
GAGGGGAGTCGCAGCGAAAATAAAACGCGGTGAAAGTGGCTTTGGGCAAT
GGAAGGAAGATGACGATGACGTCCGTTGACATTCCCGAGATCGAAGGGGG
GCACCCCAAAAAGTCTCATGATTATGGAATGCATTGGTGATTGGAGCGCA
GCAAAGTTGTCAAATAATCAATTATCCTCCATGCATAAGTGCGGGAGGGT
AAGAAGTGATGTCACTTTTGCGCAGGTACTGGATCAGAAACGAATAACAT
TTATGGTCACGTACGTCAATGGCTGTGCATTCGGCTTCAGTCCTCTTCAT
GGTCGGATGTTTTTCCTTATTTTATAGTTTTTGTCAATGGTCAGACGGCA
ATACCTGGTCAATAAGAAACCCTTGGGAGCTGCCAGAGGCACAGAGTTCA
GCTGCATCGCCATTGACGACATGTCCGTTGGTCACCATGACGAACAACCT
GAGAAGGAAGCAAAGTGTAGCAAAGCTAACAAAGTTAGCCCAAAACCACA
ATAACTGTGGGAGGAGACCTTGGCTCACCTGCACATACTGTCGAATATAC
TTTTCACCTACCTAATACCACACATACAGAAAGATACACAAAGAGGCACA
CACCATCACCCATCATCACCTGCACGCAATAACGCACCCCCCCAAACACG
CACACGCACACACGACCACATATACAGCCACACTAGACCAAACAAAATGA
AGAGTTAGACTCAACCACTGGAAGAGCGACTGTCATTTACCGTGGGGGAC
GGGGAAATGACGATGCGTGAATGGTGCCAGCCCCGACTGCCAACTTCTTT
GCCGGCTTGCCACGGTAAGGCCCCTAACGATGGGTTAAGGAGGGTGGACG
AAGACATACGTGTGGGACGAGGATATGAAGAACGGTGACCTCTTGGACAC
GTCGGAGCATGTTTTGGATTGCCTGATGAAGCACAAGCAATATACCGACG
ATGAGGAGTGGGAGGCAGAGACGGGCATCCAGCCGAAACGGACTATACAG
AAAGTTATGTGAGTTTTTTGCTCTTTTTACTTTTTTGGGGTTTTAATCAC
CATTACGAGCCTTG

protein sequence of jgi.p|Nanoce1779_2|601782

>mRNA_8371-protein ID=mRNA_8371-protein|Name=jgi.p|Nanoce1779_2|601782|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MAVHSASVLFMVGCFSLFYSFCQWSDGNTWSIRNPWELPEAQSSAASPLT
TCPLVTMTNNLRRKQSVAKLTKLAQNHNNCGRRPWLTCTYCRIYFSPT*

mRNA from alignment at scaffold_24:96757..98120-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8371 ID=mRNA_8371|Name=jgi.p|Nanoce1779_2|601782|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at scaffold_24:96757..98120- (Nannochloropsis oceanica)
GGCATGATGACAATGGGCTTCTAATACAGCACTACCGCCGCTGCTGGAAG
CAACAAAATGGTCCTGAGGAAAGGAGGAAGCAAAGAAGAAAGGGTGGAAG
TGAGGGGCAGCTGGGTAGGCGTGTGATTGTGTCGGCGGGACTCAGAATGT
TCGGAGATAGCAGTGCGACATCGCGGGGGGGCGGGGAGGCAAGTTGTCAT
GGCGGGCGAGATTTGTAATGATGACGTCCGCATTTTCCCATTGCATACAG
ACATCGAAGAGTATCAAAACGTCTGTGTGGTGCTCTCAGCGGGAGGATGG
GAGGGGAGTCGCAGCGAAAATAAAACGCGGTGAAAGTGGCTTTGGGCAAT
GGAAGGAAGATGACGATGACGTCCGTTGACATTCCCGAGATCGAAGGGGG
GCACCCCAAAAAGTCTCATGATTATGGAATGCATTGGTGATTGGAGCGCA
GCAAAGTTGTCAAATAATCAATTATCCTCCATGCATAAGTGCGGGAGGGT
AAGAAGTGATGTCACTTTTGCGCAGGTACTGGATCAGAAACGAATAACAT
TTATGGTCACGTACGTCAATGGCTGTGCATTCGGCTTCAGTCCTCTTCAT
GGTCGGATGTTTTTCCTTATTTTATAGTTTTTGTCAATGGTCAGACGGCA
ATACCTGGTCAATAAGAAACCCTTGGGAGCTGCCAGAGGCACAGAGTTCA
GCTGCATCGCCATTGACGACATGTCCGTTGGTCACCATGACGAACAACCT
GAGAAGGAAGCAAAGTGTAGCAAAGCTAACAAAGTTAGCCCAAAACCACA
ATAACTGTGGGAGGAGACCTTGGCTCACCTGCACATACTGTCGAATATAC
TTTTCACCTACCTAATACCACACATACAGAAAGATACACAAAGAGGCACA
CACCATCACCCATCATCACCTGCACGCAATAACGCACCCCCCCAAACACG
CACACGCACACACGACCACATATACAGCCACACTAGACCAAACAAAATGA
AGAGTTAGACTCAACCACTGGAAGAGCGACTGTCATTTACCGTGGGGGAC
GGGGAAATGACGATGCGTGAATGGTGCCAGCCCCGACTGCCAACTTCTTT
GCCGGCTTGCCACGGTAAGGCCCCTAACGATGGGTTAAGGAGGGTGGACG
AAGACATACGTGTGGGACGAGGATATGAAGAACGGTGACCTCTTGGACAC
GTCGGAGCATGTTTTGGATTGCCTGATGAAGCACAAGCAATATACCGACG
ATGAGGAGTGGGAGGCAGAGACGGGCATCCAGCCGAAACGGACTATACAG
AAAGTTATGTGAGTTTTTTGCTCTTTTTACTTTTTTGGGGTTTTAATCAC
CATTACGAGCCTTG

Coding sequence (CDS) from alignment at scaffold_24:96757..98120-

>mRNA_8371 ID=mRNA_8371|Name=jgi.p|Nanoce1779_2|601782|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_24:96757..98120- (Nannochloropsis oceanica)
ATGGCTGTGCATTCGGCTTCAGTCCTCTTCATGGTCGGATGTTTTTCCTT
ATTTTATAGTTTTTGTCAATGGTCAGACGGCAATACCTGGTCAATAAGAA
ACCCTTGGGAGCTGCCAGAGGCACAGAGTTCAGCTGCATCGCCATTGACG
ACATGTCCGTTGGTCACCATGACGAACAACCTGAGAAGGAAGCAAAGTGT
AGCAAAGCTAACAAAGTTAGCCCAAAACCACAATAACTGTGGGAGGAGAC
CTTGGCTCACCTGCACATACTGTCGAATATACTTTTCACCTACCTAA

Synonyms

Publications