jgi.p|Nanoce1779_2|601779, mRNA_8370 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601779
Unique NamemRNA_8370
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length258
Alignment locationscaffold_24:96057..96314 +

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Properties
Property NameValue
TranscriptId601865
TrackFilteredModels2
ProteinId601779
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:96057..96314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601779gene_8370Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601779mRNA_8370-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8370CDS_8370Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8370 ID=mRNA_8370|Name=jgi.p|Nanoce1779_2|601779|organism=Nannochloropsis oceanica|type=mRNA|length=258bp
TCACTCTCGAATGACCACGACATGTCCAGTTCTTGGGCTTGTCGTCCGAA
TCGCGCTAGTCTACGTCCGCCCACATCAGCACCCATCGTCCACCTTGCAC
TCTGCCAGCACAGCCCACCCCCGCTCGAACGTGGAGCCAAAATTGATGCG
CTTCTCCTGTGCAGCAGGTATGAATACCTTCAGATCGACCTACGGACTAG
ACAGAAAGTTCTGTAAGTTTTTTGCTCTTATTATTTTTTTGGGGTTTTAA
TCACCATT
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protein sequence of jgi.p|Nanoce1779_2|601779

>mRNA_8370-protein ID=mRNA_8370-protein|Name=jgi.p|Nanoce1779_2|601779|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MTTTCPVLGLVVRIALVYVRPHQHPSSTLHSASTAHPRSNVEPKLMRFSC
AAGMNTFRSTYGLDRKFCKFFALIIFLGF*
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mRNA from alignment at scaffold_24:96057..96314+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8370 ID=mRNA_8370|Name=jgi.p|Nanoce1779_2|601779|organism=Nannochloropsis oceanica|type=mRNA|length=258bp|location=Sequence derived from alignment at scaffold_24:96057..96314+ (Nannochloropsis oceanica)
TCACTCTCGAATGACCACGACATGTCCAGTTCTTGGGCTTGTCGTCCGAA
TCGCGCTAGTCTACGTCCGCCCACATCAGCACCCATCGTCCACCTTGCAC
TCTGCCAGCACAGCCCACCCCCGCTCGAACGTGGAGCCAAAATTGATGCG
CTTCTCCTGTGCAGCAGGTATGAATACCTTCAGATCGACCTACGGACTAG
ACAGAAAGTTCTGTAAGTTTTTTGCTCTTATTATTTTTTTGGGGTTTTAA
TCACCATT
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Coding sequence (CDS) from alignment at scaffold_24:96057..96314+

>mRNA_8370 ID=mRNA_8370|Name=jgi.p|Nanoce1779_2|601779|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_24:96057..96314+ (Nannochloropsis oceanica)
ATGACCACGACATGTCCAGTTCTTGGGCTTGTCGTCCGAATCGCGCTAGT
CTACGTCCGCCCACATCAGCACCCATCGTCCACCTTGCACTCTGCCAGCA
CAGCCCACCCCCGCTCGAACGTGGAGCCAAAATTGATGCGCTTCTCCTGT
GCAGCAGGTATGAATACCTTCAGATCGACCTACGGACTAGACAGAAAGTT
CTGTAAGTTTTTTGCTCTTATTATTTTTTTGGGGTTTTAA
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Synonyms
Publications