jgi.p|Nanoce1779_2|193265, mRNA_8362 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|193265
Unique Name	mRNA_8362
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1663
Alignment location	scaffold_24:44135..45982 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	193351
Track	FilteredModels2
ProteinId	193265

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:44135..45982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|193265	gene_8362	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|193265	mRNA_8362-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8362	CDS_8362	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:44135..45982+
coding sequence from alignment at scaffold_24:44135..45982+

mRNA sequence

>mRNA_8362 ID=mRNA_8362|Name=jgi.p|Nanoce1779_2|193265|organism=Nannochloropsis oceanica|type=mRNA|length=1663bp
GTCCGCGAACCACAGGCGGGTGGATGCCTGCACCACTCTATCACATCGGA
ACGCCCTTGCCTCCCAGCTGCCTGAACTTGAATTTCAAGTAATCGCACAT
ACCGCGCCGCTGAAATATTGCGGCGAATGAGAGGCCGAAGTTGTCAAAAA
ACGCGACCTGCTCCATGCTCCACACTCATTTACATTGAAAATCATACAGA
TATTTCCATTATGGAGCTGCCTGCCGGAGCCGAGGGAATGACATCGCCGC
CGCAGCAGCAACAGGTTGAAGGCCAAAATCTCTTACAGCACCCGCACCAG
CAGCACTGGCAGCATCAGCACCACCAGCAGCAGTCCATAATTGCTATGGA
GGAAGAGATGCCGGTCGCAGCACCACGAGATGCTGTTGGAGCCGCAGGAG
CAGCAGTAGGAACTAAACGACCGTGTAAGACGAACATGCTGGAGGAGGGA
GAGGAGAGAGCAGCGGAGAACGAAGTGGGCGATGGTAGGGAAGTGTGGCG
AGATGTGTTGAAATCTGAAAGCGTTCCAGCTCTCCGAAAGATTTTCGCAC
GCTCACCGACGAAGGTCGTCCAATGGCTTTTGGAGGAAGAGCTGGAAAGA
GGGGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGCGGAGAAGGGGG
GGGAGGAGTGGGAGATAACGAGAGGGAAGGGAGGCAGACTGTGTTGCATC
TATGCGCTATGAAGGGAGAGACGGATATGATGCAGACGATACTGGAGCTT
GCTAGTGGCAACTGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAG
CGGTGGCGATGAAAGAAGAAAAACGAGAGGAGGAGGAGAAGAAGGAAAAG
AAGGAGAAACCGGAATTCAGCGACTGCACGGCGTTCTCTCGAAACGGAAC
GCTCAGGGCCGGACCCCCCTCTATCTTGCTGCTCAAAACGGACATGACAA
GTGTGTAGCCATGCTCCTCTCCCTCTCTTCCTCCCTCCCGCCTTCCCCCC
CTTCCTTCTCCTTCCCTCCTGCGGCATCGTCGCCAACAGCACCACCACAA
CCACAGATAGTGGCAGCAGCAGCAGGAGCAGCAGGAGCAGAAGCATCGAC
CACCACCACCATTCCCTCTCTCCGTCCCTCCCTCCACGCCCTTCCTGATC
ACCACGGGACGACGCCTCTTCTCATCGCCACAAGAAGAGGACACACCGCC
GTCGTCCGGCTACTGCTGCAGGCATACCGGGAGGAAGGGAAGGAGGAGGG
CGTGGACGCCCCAGATGCCATGGGCCGCACCGCTTTTTTTGAAGCCTGTC
GGTTCGGTCGAGAGGAGATCATTCCACTGCTCCTCCAAGCAGGGGCGAGT
CCTCTTCTAGGGCCTTCGCTCCCCCTCCCCGCCGCCCGCCGACAGGGAAG
AGGCAGGACATTACTGGATCAGATCGAGGTCAGGAGGGAAGGAGGGAGGA
AAGGAGGGAAAGAGGGACCAGAGAGGTATCCTCCTCTCACCCTGTGCATA
TTCTCGTTCTATTCCCCACCTTTTCCCTTCCTCCCTCTCTCATCAGAAAG
CAACTGTTGAGCCGCAACGGTCTTTCCTCCTTCTCAAGATTCGAGTCCTC
ACTGAACTTACCTACACCTTGAACAACGACCTCTACCTCCCTCCCTGTCT
CCCTCCCTCCCTC

protein sequence of jgi.p|Nanoce1779_2|193265

>mRNA_8362-protein ID=mRNA_8362-protein|Name=jgi.p|Nanoce1779_2|193265|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MRGRSCQKTRPAPCSTLIYIENHTDISIMELPAGAEGMTSPPQQQQVEGQ
NLLQHPHQQHWQHQHHQQQSIIAMEEEMPVAAPRDAVGAAGAAVGTKRPC
KTNMLEEGEERAAENEVGDGREVWRDVLKSESVPALRKIFARSPTKVVQW
LLEEELERGETAAAAAAAAAGGEGGGGVGDNEREGRQTVLHLCAMKGETD
MMQTILELASGNCGSSSSSSSSSSSGGDERRKTRGGGEEGKEGETGIQRL
HGVLSKRNAQGRTPLYLAAQNGHDKCVAMLLSLSSSLPPSPPSFSFPPAA
SSPTAPPQPQIVAAAAGAAGAEASTTTTIPSLRPSLHALPDHHGTTPLLI
ATRRGHTAVVRLLLQAYREEGKEEGVDAPDAMGRTAFFEACRFGREEIIP
LLLQAGASPLLGPSLPLPAARRQGRGRTLLDQIEVRREGGRKGGKEGPER
YPPLTLCIFSFYSPPFPFLPLSSESNC*

mRNA from alignment at scaffold_24:44135..45982+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8362 ID=mRNA_8362|Name=jgi.p|Nanoce1779_2|193265|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp|location=Sequence derived from alignment at scaffold_24:44135..45982+ (Nannochloropsis oceanica)
GTCCGCGAACCACAGGCGGGTGGATGCCTGCACCACTCTATCACATCGGA
ACGCCCTTGCCTCCCAGCTGCCTGAACTTGAATTTCAAGTAATCGCACAT
ACCGCGCCGCTGAAATATTGCGGCGAATGAGAGGCCGAAGTTGTCAAAAA
ACGCGACCTGCTCCATGCTCCACACTCATTTACATTGAAAATCATACAGA
TATTTCCATTATGGAGCTGCCTGCCGGAGCCGAGGGAATGACATCGCCGC
CGCAGCAGCAACAGGTTGAAGGCCAAAATCTCTTACAGCACCCGCACCAG
CAGCACTGGCAGCATCAGCACCACCAGCAGCAGTCCATAATTGCTATGGA
GGAAGAGATGCCGGTCGCAGCACCACGAGATGCTGTTGGAGCCGCAGGAG
CAGCAGTAGGAACTAAACGACCGTGTAAGACGAACATGCTGGAGGAGGGA
GAGGAGAGAGCAGCGGAGAACGAAGTGGGCGATGGTAGGGAAGTGTGGCG
AGATGTGTTGAAATCTGAAAGCGTTCCAGCTCTCCGAAAGATTTTCGCAC
GCTCACCGACGAAGGTCGTCCAATGGCTTTTGGAGGAAGAGCTGGAAAGA
GGGGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGCGGAGAAGGGGG
GGGAGGAGTGGGAGATAACGAGAGGGAAGGGAGGCAGACTGTGTTGCATC
TATGCGCTATGAAGGGAGAGACGGATATGATGCAGACGATACTGGAGCTT
GCTAGTGGCAACTGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAG
CGGTGGCGATGAAAGAAGAAAAACGAGAGGAGGAGGAGAAGAAGGAAAAG
AAGGAGAAACCGGAATTCAGCGACTGCACGGCGTTCTCTCGAAACGGAAC
GCTCAGGGCCGGACCCCCCTCTATCTTGCTGCTCAAAACGGACATGACAA
GTGTGTAGCCATGCTCCTCTCCCTCTCTTCCTCCCTCCCGCCTTCCCCCC
CTTCCTTCTCCTTCCCTCCTGCGGCATCGTCGCCAACAGCACCACCACAA
CCACAGATAGTGGCAGCAGCAGCAGGAGCAGCAGGAGCAGAAGCATCGAC
CACCACCACCATTCCCTCTCTCCGTCCCTCCCTCCACGCCCTTCCTGATC
ACCACGGGACGACGCCTCTTCTCATCGCCACAAGAAGAGGACACACCGCC
GTCGTCCGGCTACTGCTGCAGGCATACCGGGAGGAAGGGAAGGAGGAGGG
CGTGGACGCCCCAGATGCCATGGGCCGCACCGCTTTTTTTGAAGCCTGTC
GGTTCGGTCGAGAGGAGGTAATGAGTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCCTCCTCCAAGCAGGCACCAATCGCATCCTTGGTTTGGCCC
ATATTCTCATCCGCTACCCCTCCCTCCCTCGCTTCCTCCCTCCCTCCCTA
GATCATTCCACTGCTCCTCCAAGCAGGGGCGAGTCCTCTTCTAGGGCCTT
CGCTCCCCCTCCCCGCCGCCCGCCGACAGGGAAGAGGCAGGACATTACTG
GATCAGATCGAGGTCAGGAGGGAAGGAGGGAGGAAAGGAGGGAAAGAGGG
ACCAGAGAGGTATCCTCCTCTCACCCTGTGCATATTCTCGTTCTATTCCC
CACCTTTTCCCTTCTTTCCCACTCATCGCTTCCTCCCTCCCTCCTTTCCT
CCCCCCCCTCCCTCCCTCCCTCTCTCATCAGAAAGCAACTGTTGAGCCGC
AACGGTCTTTCCTCCTTCTCAAGATTCGAGTCCTCACTGAACTTACCTAC
ACCTTGAACAACGACCTCTACCTCCCTCCCTGTCTCCCTCCCTCCCTC

Coding sequence (CDS) from alignment at scaffold_24:44135..45982+

>mRNA_8362 ID=mRNA_8362|Name=jgi.p|Nanoce1779_2|193265|organism=Nannochloropsis oceanica|type=CDS|length=4302bp|location=Sequence derived from alignment at scaffold_24:44135..45982+ (Nannochloropsis oceanica)
ATGAGAGGCCGAAGTTGTCAAAAAACGCGACCTGCTCCATGCTCCACACT
CATTTACATTGAAAATCATACAGATATTTCCATTATGGAGCTGCCTGCCG
GAGCCGAGGGAATGACATCGCCGCCGCAGCAGCAACAGGTTGAAGGCCAA
AATCTCTTACAGCACCCGCACCAGCAGCACTGGCAGCATCAGCACCACCA
GCAGCAGTCCATAATTGCTATGGAGGAAGAGATGCCGGTCGCAGCACCAC
GAGATGCTGTTGGAGCCGCAGGAGCAGCAGTAGGAACTAAACGACCGTGT
AAGACGAACATGCTGGAGGAGGGAGAGGAGAGAGCAGCGGAGAACGAAGT
GGGCGATGGTAGGGAAGTGTGGCGAGATGTGTTGAAATCTGAAAGCGTTC
CAGCTCTCCGAAAGATTTTCGCACGCTCACCGACGAAGGTCGTCCAATGG
CTTTTGGAGGAAGAGCTGGAAAGAGGGGAGACAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGGCGGAGAAGGGGGGGGAGGAGTGGGAGATAACGAGAGGG
AAGGGAGGCAGACTGTGTTGCATCTATGCGCTATGAAGGGAGAGACGGAT
ATGATGCAGACGATACTGGAGCTTGCTAGTGGCAACTGTGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGTAGCGGTGGCGATGAAAGAAGAAAAACGA
GAGGAGGAGGAGAAGAAGGAAAAGAAGGAGAAACCGGAATTCAGCGACTG
CACGGCGTTCTCTCGAAACGGAACGCTCAGGGCCGGACCCCCCTCTATCT
TGCTGCTCAAAACGGACATGACAAGTGTGTAGCCATGCTCCTCTCCCTCT
CTTCCTCCCTCCCGCCTTCCCCCCCTTCCTTCTCCTTCCCTCCTGCGGCA
TCGTCGCCAACAGCACCACCACAACCACAGATAGTGGCAGCAGCAGCAGG
AGCAGCAGGAGCAGAAGCATCGACCACCACCACCATTCCCTCTCTCCGTC
CCTCCCTCCACGCCCTTCCTGATCACCACGGGACGACGCCTCTTCTCATC
GCCACAAGAAGAGGACACACCGCCGTCGTCCGGCTACTGCTGCAGGCATA
CCGGGAGGAAGGGAAGGAGGAGGGCGTGGACGCCCCAGATGCCATGGGCC
GCACCGCTTTTTTTGAAGCCTGTCGGTTCGGTCGAGAGGAGATCATTCCA
CTGCTCCTCCAAGCAGGGGCGAGTCCTCTTCTAGGGCCTTCGCTCCCCCT
CCCCGCCGCCCGCCGACAGGGAAGAGGCAGGACATTACTGGATCAGATCG
AGGTCAGGAGGGAAGGAGGGAGGAAAGGAGGGAAAGAGGGACCAGAGAGG
TATCCTCCTCTCACCCTGTGCATATTCTCGTTCTATTCCCCACCTTTTCC
CTTCCTCCCTCTCTCATCAGAAAGCAACTGTTGAATGAGAGGCCGAAGTT
GTCAAAAAACGCGACCTGCTCCATGCTCCACACTCATTTACATTGAAAAT
CATACAGATATTTCCATTATGGAGCTGCCTGCCGGAGCCGAGGGAATGAC
ATCGCCGCCGCAGCAGCAACAGGTTGAAGGCCAAAATCTCTTACAGCACC
CGCACCAGCAGCACTGGCAGCATCAGCACCACCAGCAGCAGTCCATAATT
GCTATGGAGGAAGAGATGCCGGTCGCAGCACCACGAGATGCTGTTGGAGC
CGCAGGAGCAGCAGTAGGAACTAAACGACCGTGTAAGACGAACATGCTGG
AGGAGGGAGAGGAGAGAGCAGCGGAGAACGAAGTGGGCGATGGTAGGGAA
GTGTGGCGAGATGTGTTGAAATCTGAAAGCGTTCCAGCTCTCCGAAAGAT
TTTCGCACGCTCACCGACGAAGGTCGTCCAATGGCTTTTGGAGGAAGAGC
TGGAAAGAGGGGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGCGGA
GAAGGGGGGGGAGGAGTGGGAGATAACGAGAGGGAAGGGAGGCAGACTGT
GTTGCATCTATGCGCTATGAAGGGAGAGACGGATATGATGCAGACGATAC
TGGAGCTTGCTAGTGGCAACTGTGGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGTAGCGGTGGCGATGAAAGAAGAAAAACGAGAGGAGGAGGAGAAGA
AGGAAAAGAAGGAGAAACCGGAATTCAGCGACTGCACGGCGTTCTCTCGA
AACGGAACGCTCAGGGCCGGACCCCCCTCTATCTTGCTGCTCAAAACGGA
CATGACAAGTGTGTAGCCATGCTCCTCTCCCTCTCTTCCTCCCTCCCGCC
TTCCCCCCCTTCCTTCTCCTTCCCTCCTGCGGCATCGTCGCCAACAGCAC
CACCACAACCACAGATAGTGGCAGCAGCAGCAGGAGCAGCAGGAGCAGAA
GCATCGACCACCACCACCATTCCCTCTCTCCGTCCCTCCCTCCACGCCCT
TCCTGATCACCACGGGACGACGCCTCTTCTCATCGCCACAAGAAGAGGAC
ACACCGCCGTCGTCCGGCTACTGCTGCAGGCATACCGGGAGGAAGGGAAG
GAGGAGGGCGTGGACGCCCCAGATGCCATGGGCCGCACCGCTTTTTTTGA
AGCCTGTCGGTTCGGTCGAGAGGAGATCATTCCACTGCTCCTCCAAGCAG
GGGCGAGTCCTCTTCTAGGGCCTTCGCTCCCCCTCCCCGCCGCCCGCCGA
CAGGGAAGAGGCAGGACATTACTGGATCAGATCGAGGTCAGGAGGGAAGG
AGGGAGGAAAGGAGGGAAAGAGGGACCAGAGAGGTATCCTCCTCTCACCC
TGTGCATATTCTCGTTCTATTCCCCACCTTTTCCCTTCCTCCCTCTCTCA
TCAGAAAGCAACTGTTGAATGAGAGGCCGAAGTTGTCAAAAAACGCGACC
TGCTCCATGCTCCACACTCATTTACATTGAAAATCATACAGATATTTCCA
TTATGGAGCTGCCTGCCGGAGCCGAGGGAATGACATCGCCGCCGCAGCAG
CAACAGGTTGAAGGCCAAAATCTCTTACAGCACCCGCACCAGCAGCACTG
GCAGCATCAGCACCACCAGCAGCAGTCCATAATTGCTATGGAGGAAGAGA
TGCCGGTCGCAGCACCACGAGATGCTGTTGGAGCCGCAGGAGCAGCAGTA
GGAACTAAACGACCGTGTAAGACGAACATGCTGGAGGAGGGAGAGGAGAG
AGCAGCGGAGAACGAAGTGGGCGATGGTAGGGAAGTGTGGCGAGATGTGT
TGAAATCTGAAAGCGTTCCAGCTCTCCGAAAGATTTTCGCACGCTCACCG
ACGAAGGTCGTCCAATGGCTTTTGGAGGAAGAGCTGGAAAGAGGGGAGAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGGGCGGAGAAGGGGGGGGAGGAG
TGGGAGATAACGAGAGGGAAGGGAGGCAGACTGTGTTGCATCTATGCGCT
ATGAAGGGAGAGACGGATATGATGCAGACGATACTGGAGCTTGCTAGTGG
CAACTGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCGGTGGCG
ATGAAAGAAGAAAAACGAGAGGAGGAGGAGAAGAAGGAAAAGAAGGAGAA
ACCGGAATTCAGCGACTGCACGGCGTTCTCTCGAAACGGAACGCTCAGGG
CCGGACCCCCCTCTATCTTGCTGCTCAAAACGGACATGACAAGTGTGTAG
CCATGCTCCTCTCCCTCTCTTCCTCCCTCCCGCCTTCCCCCCCTTCCTTC
TCCTTCCCTCCTGCGGCATCGTCGCCAACAGCACCACCACAACCACAGAT
AGTGGCAGCAGCAGCAGGAGCAGCAGGAGCAGAAGCATCGACCACCACCA
CCATTCCCTCTCTCCGTCCCTCCCTCCACGCCCTTCCTGATCACCACGGG
ACGACGCCTCTTCTCATCGCCACAAGAAGAGGACACACCGCCGTCGTCCG
GCTACTGCTGCAGGCATACCGGGAGGAAGGGAAGGAGGAGGGCGTGGACG
CCCCAGATGCCATGGGCCGCACCGCTTTTTTTGAAGCCTGTCGGTTCGGT
CGAGAGGAGATCATTCCACTGCTCCTCCAAGCAGGGGCGAGTCCTCTTCT
AGGGCCTTCGCTCCCCCTCCCCGCCGCCCGCCGACAGGGAAGAGGCAGGA
CATTACTGGATCAGATCGAGGTCAGGAGGGAAGGAGGGAGGAAAGGAGGG
AAAGAGGGACCAGAGAGGTATCCTCCTCTCACCCTGTGCATATTCTCGTT
CTATTCCCCACCTTTTCCCTTCCTCCCTCTCTCATCAGAAAGCAACTGTT
GA

Synonyms

Publications