jgi.p|Nanoce1779_2|655614, mRNA_8361 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|655614
Unique NamemRNA_8361
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length898
Alignment locationscaffold_24:40397..42029 -

Link to JBrowse

Properties
Property NameValue
TranscriptId655700
TrackFilteredModels2
ProteinId655614
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:40397..42029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655614gene_8361Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655614mRNA_8361-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8361CDS_8361Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8361 ID=mRNA_8361|Name=jgi.p|Nanoce1779_2|655614|organism=Nannochloropsis oceanica|type=mRNA|length=898bp
TCAACGGCTCACACCCGTCAAACGGGCTTCTTCCCTGCTTCTATCTCTCG
TCTTGCACAACCCATATCTCACGTGCCTAACTCCGCAAAACGAATACTGA
GGCCGCGTAGGCTCACCAGAACATCTGCCACGATAAACGTGACCACAGCG
TTGATGCTGCGGTTTTGTATGCCTGAGCAACATCAGAGCGCACGTCAGAA
GCAAGACTGCTTCAACCCATTGCAATAATGATGATGGGTCGTCGTGCATT
CCAGAACCATGTCCGTGCTCACCCTCTTCCTCCTCCCATCTCTCCTCACA
CCACGCTACAAAGGCAACAAAACCGGCAACTACTACGTAAGCAATAGTCA
TGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGAGCCGCG
GTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCGCAAGTCAC
ACATATTCTGTCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAAA
TGGTGCGACTGACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGT
TACGACGATAGCATGCCGAAATGGTGCTCTAATGCTCTGAAGGGTATCAA
TTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCTGGATGTT
TCAAATTTCACCATGACACGGGCAAAAACCTTAAGTCCATCGTCGTCTTC
CCCCTTATCGCGGGCGCCGGGGGGCCAGGAGAGGTAGGGAAAGAGGGAGG
GAGGGAGGGAGGGAGGGAGGAAGGGATGCACCCGACAATCAGTCCATCTG
TTGAGTTCTCATCCCCGTGTGCTCAATTTCGTCTTTCAATTCCTTGCCTC
CCTCCCTCTTGTCCTCCTCTTCCTCCCTCCCCTCCCTCCCTCCCTCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|655614

>mRNA_8361-protein ID=mRNA_8361-protein|Name=jgi.p|Nanoce1779_2|655614|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MAEEQQHHSLVKHVRAAVDAETFDLGGLNEAQVTHILSSAFATPFENLTE
MVRLTFVVGGGKGVRARYDDSMPKWCSNALKGINFIEDKSAANDLASAGC
FKFHHDTGKNLKSIVVFPLIAGAGGPGEVGKEGGREGGREEGMHPTISPS
VEFSSPCAQFRLSIPCLPPSCPPLPPSPPSLPP
back to top

mRNA from alignment at scaffold_24:40397..42029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8361 ID=mRNA_8361|Name=jgi.p|Nanoce1779_2|655614|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp|location=Sequence derived from alignment at scaffold_24:40397..42029- (Nannochloropsis oceanica)
TCAACGGCTCACACCCGTCAAACGGGCTTCTTCCCTGCTTCTATCTCTCG
TCTTGCACAACCCATATCTCACGTGCCTAACTCCGCAAAACGAATACTGA
GGCCGCGTAGGCTCACCAGAACATCTGCCACGATAAACGTGACCACAGCG
TTGATGCTGCGGTTTTGTATGCCTGAGCAACATCAGAGCGCACGTCAGAA
GCAAGACTGCTTCAACCCATTGCAATAATGATGATGGGTCGTCGTGCATT
CCAGAACCATGTCCGTGCTCACCCTCTTCCTCCTCCCATCTCTCCTCACA
CCACGCTACAAAGGCAACAAAACCGGCAACTACTACGTAAGCAATAGTCA
TGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGGTACGTC
TTGCCTGCTTCAGGGAGAGAGGGAGGGGAGGAAGGAGGGGACGGCAAGCG
GGTAGATAGCAAGGTCGTGATCATCGTCGTCCAGCTCACTCATGTGCACT
CATGTGCGTCCACCTCATATACAAATAGAGCCGCGGTCGATGCCGAGACC
TTTGACTTGGGTGGCTTGAACGAGGCGCAAGTAAGTAGAGGGGAGGCAAG
GGCTGGAAGAAGGTAGGGCTTGAGGGAGGGGCGGTAGGCATGCCGCTGCG
GTAGACGTATTTCACATTCTCATCCTCTGTAACAGGTCACACATATTCTG
TCTAGTGCCTTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGACT
GACCTTTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGATA
GCATGCCGGTAAGAGGGAGAGAGAGGAGGAGGGAGAGGGAGAGAAAGAGA
GGCCACTCACACAAGAACGCGAGGGTGATACTGAAAGACGGAGGAAGGAG
AAAAGGAAGGGAAAGAAAGGCCACTCACACAAGAACGCGAGGGTGATATT
GAAAGAGGGAGAGAGGGGGAAGGGAGGGAAAGGAAGGCCCATCAAAATAT
ATGCGAGACTGCTATCGAATGAGAAAGATATGTGATATTTGTTCTATCTC
ACCTTTGTCTTTTTCTCCCTCCTCCATCAGAAATGGTGCTCTAATGCTCT
GAAGGGTATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCAT
CCGCTGGATGTTTCAAATTTCACCATGACACGGGTACGTCCCTCCCTCCC
TCCCTCCCTCCCTACCTCCCTCCCTTCCTCCCTGTTCTCCCTGCCGTACC
GTCCTCCCTCCCTGCCCACACCCCCTTCCTATCTTTCTTTCCTCCCCTTC
TCTGCCCCTGCAGCGCTGGACATGGCTTCTGCGAATGCATGACTCCCCTG
TCCCCCTCCTTCCCTCCTCCCCCCTCCCCGTTTTTCTCTCTCAAAAAAAC
AAATAGGCAAAAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGGGC
GCCGGGGGGCCAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGAAGGGATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATCCC
CGTGTGCTCAATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTCCT
CCTCTTCCTCCCTCCCCTCCCTCCCTCCCTCCC
back to top

Coding sequence (CDS) from alignment at scaffold_24:40397..42029-

>mRNA_8361 ID=mRNA_8361|Name=jgi.p|Nanoce1779_2|655614|organism=Nannochloropsis oceanica|type=CDS|length=2745bp|location=Sequence derived from alignment at scaffold_24:40397..42029- (Nannochloropsis oceanica)
GCAAAAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGGGCGCCGGG
GGGCCAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGA
AGGGATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATCCCCGTGTG
CTCAATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTCCTCCTCTT
CCTCCCTCCCCTCCCTCCCTCCCTCCCAAATGGTGCTCTAATGCTCTGAA
GGGTATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCG
CTGGATGTTTCAAATTTCACCATGACACGGGTCACACATATTCTGTCTAG
TGCCTTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGACTGACCT
TTGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGATAGCATG
CCGAGCCGCGGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGG
CGCAAATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGG
CAAAAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGGGCGCCGGGG
GGCCAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAA
GGGATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATCCCCGTGTGC
TCAATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTCCTCCTCTTC
CTCCCTCCCCTCCCTCCCTCCCTCCCAAATGGTGCTCTAATGCTCTGAAG
GGTATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGC
TGGATGTTTCAAATTTCACCATGACACGGGTCACACATATTCTGTCTAGT
GCCTTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGACTGACCTT
TGTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGATAGCATGC
CGAGCCGCGGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGC
GCAAATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGGC
AAAAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGGGCGCCGGGGG
GCCAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAG
GGATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATCCCCGTGTGCT
CAATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTCCTCCTCTTCC
TCCCTCCCCTCCCTCCCTCCCTCCCAAATGGTGCTCTAATGCTCTGAAGG
GTATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCT
GGATGTTTCAAATTTCACCATGACACGGGTCACACATATTCTGTCTAGTG
CCTTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGACTGACCTTT
GTGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGATAGCATGCC
GAGCCGCGGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCG
CAAATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGGCA
AAAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGGGCGCCGGGGGG
CCAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGG
GATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATCCCCGTGTGCTC
AATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTCCTCCTCTTCCT
CCCTCCCCTCCCTCCCTCCCTCCCAAATGGTGCTCTAATGCTCTGAAGGG
TATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCTG
GATGTTTCAAATTTCACCATGACACGGGTCACACATATTCTGTCTAGTGC
CTTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGACTGACCTTTG
TGGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGATAGCATGCCG
AGCCGCGGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCGC
AAATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCGGCAA
AAACCTTAAGTCCATCGTCGTCTTCCCCCTTATCGCGGGCGCCGGGGGGC
CAGGAGAGGTAGGGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGG
ATGCACCCGACAATCAGTCCATCTGTTGAGTTCTCATCCCCGTGTGCTCA
ATTTCGTCTTTCAATTCCTTGCCTCCCTCCCTCTTGTCCTCCTCTTCCTC
CCTCCCCTCCCTCCCTCCCTCCCAAATGGTGCTCTAATGCTCTGAAGGGT
ATCAATTTTATTGAGGACAAGTCGGCTGCCAACGACCTCGCATCCGCTGG
ATGTTTCAAATTTCACCATGACACGGGTCACACATATTCTGTCTAGTGCC
TTCGCCACCCCTTTCGAGAACCTGACGGAAATGGTGCGACTGACCTTTGT
GGTAGGAGGGGGGAAAGGCGTCAGGGCCCGTTACGACGATAGCATGCCGA
GCCGCGGTCGATGCCGAGACCTTTGACTTGGGTGGCTTGAACGAGGCGCA
AATGGCGGAAGAGCAACAGCATCATTCCCTCGTGAAGCACGTCCG
back to top
Synonyms
Publications