jgi.p|Nanoce1779_2|655604, mRNA_8358 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|655604
Unique Name	mRNA_8358
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	817
Alignment location	scaffold_24:28111..28927 +

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Properties


Property Name	Value
TranscriptId	655690
Track	FilteredModels2
ProteinId	655604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:28111..28927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655604	gene_8358	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655604	mRNA_8358-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8358	CDS_8358	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:28111..28927+
coding sequence from alignment at scaffold_24:28111..28927+

mRNA sequence

>mRNA_8358 ID=mRNA_8358|Name=jgi.p|Nanoce1779_2|655604|organism=Nannochloropsis oceanica|type=mRNA|length=817bp
GGAAATAAATTCATCAACATCAAGTAAATCCTCGGTCTTGCCCTGTTCCC
CAAAAATAACCATAAAAATTGTGGAAAGCAAGGGTCAAATGAAGAAGAAA
AACACAAGGGGGGGCACCATTTTAAGATGTTTTCATCTTATTGGAAGGTA
GGCTCAGATCTCCTTGTGGTAGTGTGTGAGAGCGAGAGGAGCCAAAGGCG
GGCGAGGTAGGGATGTTCGGCAACACCGCTGTTGCTGCAGCAGCTGCTGC
TTCTGCTGCTGTTATCGTGTCATGTTTTTCTCCGGCAATCATCCAGTTTG
TCTTGCTTTTGGTTATCGTCATTTCCCCTTGGCTTCACTCATCAATCGCC
CGCGCTCTCTTTCTTCCTTCTTCCTTCCCTCCCTCCCTTCCTTCCTTTCC
CCACAAGGAATCCAACCTCAAATCCTTCTCCTTCTCCTTCCCTTTTCTCC
CTGGATTTATCTTTTCTTCATGCTCCCCTTAGGCCCCTCTCACCCCCACC
TCCTCTCTTCCCTCCTTTCTCCCCTCCTCCTCCTCCGCCTCCTCTTCCTT
TCCCTCCTCATCCTCCTCCTTCCTCGCCTCCTCCTCTGCCCACGGTACCC
GCACCAGCTCCATGACCTCTCTAAAATGATCCGCAATCATCCTCCCTCCC
TCCCTCCCTCCCCCCACCTCCTCCTCTGTCCCTCCACACACATACCTCAT
CACAGCCACCACTCGCTCCACCCCCTCCCCCCCTCCCTGATTCCCCCCCT
CCTCCCCTCCCTCCATTTCTATTTTCTCCTTCCTCTCTCTCACTACCACC
ACCCGTGGCAACGCCAT

protein sequence of jgi.p|Nanoce1779_2|655604

>mRNA_8358-protein ID=mRNA_8358-protein|Name=jgi.p|Nanoce1779_2|655604|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MFFSGNHPVCLAFGYRHFPLASLINRPRSLSSFFLPSLPSFLSPQGIQPQ
ILLLLLPFSPWIYLFFMLPLGPSHPHLLSSLLSPLLLLRLLFLSLLILLL
PRLLLCPRYPHQLHDLSKMIRNHPPSLPPSPHLLLCPSTHIPHHSHHSLH
PLPPSLIPPLLPSLHFYFLLPLSHYHHPWQRH

mRNA from alignment at scaffold_24:28111..28927+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8358 ID=mRNA_8358|Name=jgi.p|Nanoce1779_2|655604|organism=Nannochloropsis oceanica|type=mRNA|length=817bp|location=Sequence derived from alignment at scaffold_24:28111..28927+ (Nannochloropsis oceanica)
GGAAATAAATTCATCAACATCAAGTAAATCCTCGGTCTTGCCCTGTTCCC
CAAAAATAACCATAAAAATTGTGGAAAGCAAGGGTCAAATGAAGAAGAAA
AACACAAGGGGGGGCACCATTTTAAGATGTTTTCATCTTATTGGAAGGTA
GGCTCAGATCTCCTTGTGGTAGTGTGTGAGAGCGAGAGGAGCCAAAGGCG
GGCGAGGTAGGGATGTTCGGCAACACCGCTGTTGCTGCAGCAGCTGCTGC
TTCTGCTGCTGTTATCGTGTCATGTTTTTCTCCGGCAATCATCCAGTTTG
TCTTGCTTTTGGTTATCGTCATTTCCCCTTGGCTTCACTCATCAATCGCC
CGCGCTCTCTTTCTTCCTTCTTCCTTCCCTCCCTCCCTTCCTTCCTTTCC
CCACAAGGAATCCAACCTCAAATCCTTCTCCTTCTCCTTCCCTTTTCTCC
CTGGATTTATCTTTTCTTCATGCTCCCCTTAGGCCCCTCTCACCCCCACC
TCCTCTCTTCCCTCCTTTCTCCCCTCCTCCTCCTCCGCCTCCTCTTCCTT
TCCCTCCTCATCCTCCTCCTTCCTCGCCTCCTCCTCTGCCCACGGTACCC
GCACCAGCTCCATGACCTCTCTAAAATGATCCGCAATCATCCTCCCTCCC
TCCCTCCCTCCCCCCACCTCCTCCTCTGTCCCTCCACACACATACCTCAT
CACAGCCACCACTCGCTCCACCCCCTCCCCCCCTCCCTGATTCCCCCCCT
CCTCCCCTCCCTCCATTTCTATTTTCTCCTTCCTCTCTCTCACTACCACC
ACCCGTGGCAACGCCAT

Coding sequence (CDS) from alignment at scaffold_24:28111..28927+

>mRNA_8358 ID=mRNA_8358|Name=jgi.p|Nanoce1779_2|655604|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_24:28111..28927+ (Nannochloropsis oceanica)
ATGTTTTTCTCCGGCAATCATCCAGTTTGTCTTGCTTTTGGTTATCGTCA
TTTCCCCTTGGCTTCACTCATCAATCGCCCGCGCTCTCTTTCTTCCTTCT
TCCTTCCCTCCCTCCCTTCCTTCCTTTCCCCACAAGGAATCCAACCTCAA
ATCCTTCTCCTTCTCCTTCCCTTTTCTCCCTGGATTTATCTTTTCTTCAT
GCTCCCCTTAGGCCCCTCTCACCCCCACCTCCTCTCTTCCCTCCTTTCTC
CCCTCCTCCTCCTCCGCCTCCTCTTCCTTTCCCTCCTCATCCTCCTCCTT
CCTCGCCTCCTCCTCTGCCCACGGTACCCGCACCAGCTCCATGACCTCTC
TAAAATGATCCGCAATCATCCTCCCTCCCTCCCTCCCTCCCCCCACCTCC
TCCTCTGTCCCTCCACACACATACCTCATCACAGCCACCACTCGCTCCAC
CCCCTCCCCCCCTCCCTGATTCCCCCCCTCCTCCCCTCCCTCCATTTCTA
TTTTCTCCTTCCTCTCTCTCACTACCACCACCCGTGGCAACGCCAT

Synonyms

Publications