jgi.p|Nanoce1779_2|193046, mRNA_8357 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|193046
Unique NamemRNA_8357
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length806
Alignment locationscaffold_24:27336..28259 +

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Properties
Property NameValue
TranscriptId193132
TrackFilteredModels2
ProteinId193046
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:27336..28259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|193046gene_8357Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|193046mRNA_8357-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8357CDS_8357Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8357 ID=mRNA_8357|Name=jgi.p|Nanoce1779_2|193046|organism=Nannochloropsis oceanica|type=mRNA|length=806bp
GTGGAAAGCGAGCACGGCAGTATGAGAGCTTTGACGCGTTTTACAAGGGC
ATGTATCGGTGAGTGGAAGGAAGGGACGGAGGGATCGAGGGACGGAGGGA
CGGGCAAAAGCAGGGAGGAAGGCAGGGTTGTGGGCCTCTACCTCTATTAA
CTCTATAGAGTGCTAGTCGCTTTGCCTGTCCTGTAGATCAATGGCAGCAC
GGAGCACAACATGGACTCGTGTCGTGAATGTTGTTCTCATGACATGCCTT
TCCTCCTCCCTTACTTCCCTATACGCGTCAGGAAGGAGCACTCTGACGAC
AAGAACCGTTATCTGCACTTCATCGGCACCACCATTGCTCTTGCATCTGC
GGCTGCTGAGCCAACCCTCTTTCTTGCTGCCCTAGCTGCAGTGGTCGTAG
GGCTTAATGTGTTTGAGCTCACGTACATGCGTTCCAATGGCGCCATCGAA
GGGGCAGCAATGCTCCTGGCCTACCTCTCTCTCGCGTACATCCCCCGTCG
ATCCCTCCGTCGGCCCCTCCTTACCATCCTCTGTGGGTATGCATGTGCCT
GGGTCGGTCATTTCGTGATAGAGGGGAATAGACCTGCCACGTTTACGTAT
GCCGTCTTCTCTTTCATAGGCGACTTTAGGATGTGGTGGGAGACGGTAGG
GGAGCTAGGAAATAAATTCATCAACATCAAGTAAATCCTCGGTCTTGCCC
TGTTCCCCAAAAATAACCATAAAAATTGTGGAAAGCAAGGGTCAAATGAA
GAAGAAAAACACAAGGGGGGGCACCATTTTAAGATGTTTTCATCTTATTG
GAAGGT
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protein sequence of jgi.p|Nanoce1779_2|193046

>mRNA_8357-protein ID=mRNA_8357-protein|Name=jgi.p|Nanoce1779_2|193046|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MDSCRECCSHDMPFLLPYFPIRVRKEHSDDKNRYLHFIGTTIALASAAAE
PTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLR
RPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETVGELG
NKFINIK*
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mRNA from alignment at scaffold_24:27336..28259+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8357 ID=mRNA_8357|Name=jgi.p|Nanoce1779_2|193046|organism=Nannochloropsis oceanica|type=mRNA|length=924bp|location=Sequence derived from alignment at scaffold_24:27336..28259+ (Nannochloropsis oceanica)
GTGGAAAGCGAGCACGGCAGTATGAGAGCTTTGACGCGTTTTACAAGGGC
ATGTATCGGTGAGTGGAAGGAAGGGACGGAGGGATCGAGGGACGGAGGGA
CGGGCAAAAGCAGGGAGGAAGGCAGGGTTGTGGGCCTCTACCTCTATTAA
CTCTATAGAGTGCTAGTCGCTTTGCCTGTCCTGTAGATCAATGGCAGCAC
GGAGCACAACATGGACTCGTGTCGTGAATGTTGTTCTCATGACATGCCTT
TCCTCCTCCCTTACTTCCCTATACGCGTCAGGAAGGAGCACTCTGACGAC
AAGAACCGTTATCTGCACTTCATCGGCACCACCATTGCTCTTGCATCTGC
GGCTGCTGAGCCAACCCTCTTTCTTGCTGCCCTAGCTGCAGTGGTCGTAG
GGCTTAATGTGTTTGAGCTCACGTACATGGTGAGGAAGGGAGGGAGGGAG
GGCAGGAGGGAGAGAGCACGGTGAAAGGGAAGGTGGCGACAAACACGACC
AATCACTCACAGCATCCTCCCCCTCCGTCTCCATGTTCCCCTACCAGCGT
TCCAATGGCGCCATCGAAGGGGCAGCAATGCTCCTGGCCTACCTCTCTCT
CGCGTACATCCCCCGTCGATCCCTCCGTCGGCCCCTCCTTACCATCCTCT
GTGGGTATGCATGTGCCTGGGTCGGTCATTTCGTGATAGAGGGGAATAGA
CCTGCCACGTTTACGTATGCCGTCTTCTCTTTCATAGGCGACTTTAGGAT
GTGGTGGGAGACGGTAGGGGAGCTAGGAAATAAATTCATCAACATCAAGT
AAATCCTCGGTCTTGCCCTGTTCCCCAAAAATAACCATAAAAATTGTGGA
AAGCAAGGGTCAAATGAAGAAGAAAAACACAAGGGGGGGCACCATTTTAA
GATGTTTTCATCTTATTGGAAGGT
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Coding sequence (CDS) from alignment at scaffold_24:27336..28259+

>mRNA_8357 ID=mRNA_8357|Name=jgi.p|Nanoce1779_2|193046|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_24:27336..28259+ (Nannochloropsis oceanica)
ATGGACTCGTGTCGTGAATGTTGTTCTCATGACATGCCTTTCCTCCTCCC
TTACTTCCCTATACGCGTCAGGAAGGAGCACTCTGACGACAAGAACCGTT
ATCTGCACTTCATCGGCACCACCATTGCTCTTGCATCTGCGGCTGCTGAG
CCAACCCTCTTTCTTGCTGCCCTAGCTGCAGTGGTCGTAGGGCTTAATGT
GTTTGAGCTCACGTACATGCGTTCCAATGGCGCCATCGAAGGGGCAGCAA
TGCTCCTGGCCTACCTCTCTCTCGCGTACATCCCCCGTCGATCCCTCCGT
CGGCCCCTCCTTACCATCCTCTGTGGGTATGCATGTGCCTGGGTCGGTCA
TTTCGTGATAGAGGGGAATAGACCTGCCACGTTTACGTATGCCGTCTTCT
CTTTCATAGGCGACTTTAGGATGTGGTGGGAGACGGTAGGGGAGCTAGGA
AATAAATTCATCAACATCAAGTAAATGGACTCGTGTCGTGAATGTTGTTC
TCATGACATGCCTTTCCTCCTCCCTTACTTCCCTATACGCGTCAGGAAGG
AGCACTCTGACGACAAGAACCGTTATCTGCACTTCATCGGCACCACCATT
GCTCTTGCATCTGCGGCTGCTGAGCCAACCCTCTTTCTTGCTGCCCTAGC
TGCAGTGGTCGTAGGGCTTAATGTGTTTGAGCTCACGTACATGCGTTCCA
ATGGCGCCATCGAAGGGGCAGCAATGCTCCTGGCCTACCTCTCTCTCGCG
TACATCCCCCGTCGATCCCTCCGTCGGCCCCTCCTTACCATCCTCTGTGG
GTATGCATGTGCCTGGGTCGGTCATTTCGTGATAGAGGGGAATAGACCTG
CCACGTTTACGTATGCCGTCTTCTCTTTCATAGGCGACTTTAGGATGTGG
TGGGAGACGGTAGGGGAGCTAGGAAATAAATTCATCAACATCAAGTAA
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Synonyms
Publications