jgi.p|Nanoce1779_2|192854, mRNA_8355 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|192854
Unique Name	mRNA_8355
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1117
Alignment location	scaffold_24:19593..21581 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	192940
Track	FilteredModels2
ProteinId	192854

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:19593..21581 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|192854	gene_8355	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|192854	mRNA_8355-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8355	CDS_8355	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:19593..21581+
coding sequence from alignment at scaffold_24:19593..21581+

mRNA sequence

>mRNA_8355 ID=mRNA_8355|Name=jgi.p|Nanoce1779_2|192854|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp
GCTCTGGTGGCAAAAGCCAAGGAATGGGATGAGTGGGCAGCAATTGTCCG
GACCCGTGCAGCGGTAGCCAGCGTAGATAGTCTGTTGAAGGTGACTGGCA
TTGCTAGAGGTCGCACTGGGATGAGGAGAAGGACGAGGAGGATGAGGTGC
AGCAAAGGGAGGGGAGGGAGAAGTGCACTGGTTGGGATACTAGGAGCGGC
AGCAGCAGCAGAACGACAAGTTTGTTGCATCCTTCCCCGCCTCAGATCCT
TGAGAACCCCTTCTCTTTTTCGTGCGGCTTCGACCAAGGGTTCATGTCTC
TTATCCTGTGGTTTGTATGGTGGATGGTGGTATCGTGTCTGTGTAGGATT
TCGGAGGAGCAGGATATGTTGCCGTTGCTTTTGGAAGACGAACGTCGAGG
GGCACGAAGAGTCGTGCTGCCGCTCCTGAAGACGCTGGGGCTTCTGCTGG
TGCTGCTGCTCACTATAACCTCACAGGCAGCAGCAATTACCTCGACCACC
ACGACAGTCAGCGACGGCTCCTGTAGCGCAGCATCTACGTCACACGCCCA
TGACAGGGACGAGAATCATAAAAACGGCGTAGGCAGCCGTGTCCTCCATG
AAGATGACCAGATAAAGGTCTGGGAGATGATCCTGCAGCCAGGAGAGTTG
GCCCCGCTTCACACGCATGAGTACCCCTACACCTTCATCGTGGAGAGCGG
GTCTACCGTGGAAGTGCGGGGGGCCGAGGAAGAGCATCTGCTTACGTTTA
CGGCCCATGCAGGCGAGGTCCTCTCCTTTAACCTTATCGGTACGTGGAGG
GAGCGAAGGAAGGAGGGTGAGAAGTCTGAGGATAGTGGATTTCCTCTCTC
TTTCCTCGTCTATTGAAACGGTAATCGCCTACAAGGAACATCACCTACAC
CCTTCCCTCCCTCCCTCCCTCTCCCTCTCTCCCTCCCTCAGGCGACGAGC
TGGTGGATCCCACGGGCCAATATCGCCTCAACAAGAGCCACAGCGCTCGC
AATATCGGTGCAAGTATCTTCAAGGAAATGTTGATCGAGAAAAAGACTAA
ACAGTAAAGAATTAAACCATGGCTGCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTCTCCCTCCCTCC

protein sequence of jgi.p|Nanoce1779_2|192854

>mRNA_8355-protein ID=mRNA_8355-protein|Name=jgi.p|Nanoce1779_2|192854|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MSLILWFVWWMVVSCLCRISEEQDMLPLLLEDERRGARRVVLPLLKTLGL
LLVLLLTITSQAAAITSTTTTVSDGSCSAASTSHAHDRDENHKNGVGSRV
LHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLL
TFTAHAGEVLSFNLIGTWRERRKEGEKSEDSGFPLSFLVY*

mRNA from alignment at scaffold_24:19593..21581+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8355 ID=mRNA_8355|Name=jgi.p|Nanoce1779_2|192854|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at scaffold_24:19593..21581+ (Nannochloropsis oceanica)
GCTCTGGTGGCAAAAGCCAAGGAATGGGATGAGTGGGCAGCAATTGTCCG
GACCCGTGCAGCGGTAGCCAGCGTAGATAGTCTGTTGAAGGTGACTGGCA
TTGCTAGAGGTCGCACTGGGATGAGGAGAAGGACGAGGAGGATGAGGTGC
AGCAAAGGGAGGGGAGGGAGAAGTGCACTGGTTGGGATACTAGGAGCGGC
AGCAGCAGCAGAACGACAAGTTTGTTGCATCCTTCCCCGCCTCAGATCCT
TGAGAACCCCTTCTCTTTTTCGTGCGGCTTCGACCAAGGGTTCATGTCTC
TTATCCTGTGGTTTGTATGGTGGATGGTGGTATCGTGTCTGTGTAGGATT
TCGGAGGGTACGTATGATGTGACGGCGTTGGCGACTGCTTTTTTTTTGTG
AATTGCCGCGGCTTACACCATGCAATCGATTCAAGGCCTTACATAACCCC
TTTTTGTTCACACCATGCACACAGAGCAGGATATGTTGCCGTTGCTTTTG
GAAGACGAACGTCGAGGGGCACGAAGAGTCGTGCTGCCGCTCCTGAAGAC
GCTGGGGCTTCTGCTGGTGCTGCTGCTCACTATAACCTCACAGGCAGCAG
CAATTACCTCGACCACCACGACAGTCAGCGACGGCTCCTGTAGCGCAGCA
TCTACGGTAAGGGCAGGTAGCGTCGGGAAGTGCACAGAGGATGAGTGACT
TGTCTGTGCGGCGTGGCGCGGTTGCCGTCTCTTGTCCGTGCAGGCACGAG
GGCGGTGATCCACGGCACTGCGTCCGACACGAAATAGTCTGTACTCACAG
ACATTAAAATATGCTGAGCTGAGTCTGAATTCATTGCTGTTCAATTTTTG
GGAGGGCTGAACTCAAGAAATTGCGCGCCTCTCTCTCTGCTTACCTCATT
TAATCCCCCATTGGTCCGCCCGCCTCATCTCTACCTCCTCCACTTCACTT
CTCTCGCAATCCCCCCAACCATCCTACATTTGTTTTCCCCATTAAGTCAC
ACGCCCATGACAGGGACGAGAATCATAAAAACGGCGTAGGCAGCCGTGTC
CTCCATGAAGATGACCAGATAAAGGTCTGGGAGATGGTAAGGAAGGGAGG
AAGGGAGGAAGGGAGGGAGGGGAGTAAGGGAGAGGAGGAGAGGGGGAGGA
AAGACGGAAAGTCAAATTGGATGGTACACAATGCCGGAAGGAAGAAGGGT
GGAAGGGGGGGGGACTAAGGGAGGGAGGGAAGGAGGGAATGGAGACCGCC
TTTTTTCCCTTGAATGTCTCGTGACGCAAGTACACGTCTAAGTTTCCTCC
CTCCCTCCCTTCCTCCCTTTTCCCACCAGATCCTGCAGCCAGGAGAGTTG
GCCCCGCTTCACACGCATGAGTACCCCTACACCTTCATCGTGGAGGTAGG
AAATGAGGGAGGTTGGTAGGGAGGAAGGGAGGGAGAGAATGAATGACGGG
GGCGGTCCACACACAGTGAGACGAACAACTCAATGATCGGGACTTAACCC
TCTTTCTCCCCTCCCTCTTGCTCTCCATCCCTCCCTCTCTGCCTCCCTCC
CTCCTCCCGAACGGTAGAGCGGGTCTACCGTGGAAGTGCGGGGGGCCGAG
GAAGAGCATCTGCTTACGTTTACGGCCCATGCAGGCGAGGTCCTCTCCTT
TAACCTTATCGGTACGTGGAGGGAGCGAAGGAAGGAGGGTGAGAAGTCTG
AGGATAGTGGATTTCCTCTCTCTTTCCTCGTCTATTGAAACGGTAATCGC
CTACAAGGAACATCACCTACACCCTTCCCTCCCTCCCTCCCTCTCCCTCT
CTCCCTCCCTCAGGCGACGAGCTGGTGGATCCCACGGGCCAATATCGCCT
CAACAAGAGCCACAGCGCTCGCAATATCGGTGCAAGTATCTTCAAGGAAA
TGTTGATCGAGAAAAAGACTAAACAGTAAAGAATTAAACCATGGCTGCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCC

Coding sequence (CDS) from alignment at scaffold_24:19593..21581+

>mRNA_8355 ID=mRNA_8355|Name=jgi.p|Nanoce1779_2|192854|organism=Nannochloropsis oceanica|type=CDS|length=2865bp|location=Sequence derived from alignment at scaffold_24:19593..21581+ (Nannochloropsis oceanica)
ATGTCTCTTATCCTGTGGTTTGTATGGTGGATGGTGGTATCGTGTCTGTG
TAGGATTTCGGAGGAGCAGGATATGTTGCCGTTGCTTTTGGAAGACGAAC
GTCGAGGGGCACGAAGAGTCGTGCTGCCGCTCCTGAAGACGCTGGGGCTT
CTGCTGGTGCTGCTGCTCACTATAACCTCACAGGCAGCAGCAATTACCTC
GACCACCACGACAGTCAGCGACGGCTCCTGTAGCGCAGCATCTACGTCAC
ACGCCCATGACAGGGACGAGAATCATAAAAACGGCGTAGGCAGCCGTGTC
CTCCATGAAGATGACCAGATAAAGGTCTGGGAGATGATCCTGCAGCCAGG
AGAGTTGGCCCCGCTTCACACGCATGAGTACCCCTACACCTTCATCGTGG
AGAGCGGGTCTACCGTGGAAGTGCGGGGGGCCGAGGAAGAGCATCTGCTT
ACGTTTACGGCCCATGCAGGCGAGGTCCTCTCCTTTAACCTTATCGGTAC
GTGGAGGGAGCGAAGGAAGGAGGGTGAGAAGTCTGAGGATAGTGGATTTC
CTCTCTCTTTCCTCGTCTATTGAATGTCTCTTATCCTGTGGTTTGTATGG
TGGATGGTGGTATCGTGTCTGTGTAGGATTTCGGAGGAGCAGGATATGTT
GCCGTTGCTTTTGGAAGACGAACGTCGAGGGGCACGAAGAGTCGTGCTGC
CGCTCCTGAAGACGCTGGGGCTTCTGCTGGTGCTGCTGCTCACTATAACC
TCACAGGCAGCAGCAATTACCTCGACCACCACGACAGTCAGCGACGGCTC
CTGTAGCGCAGCATCTACGTCACACGCCCATGACAGGGACGAGAATCATA
AAAACGGCGTAGGCAGCCGTGTCCTCCATGAAGATGACCAGATAAAGGTC
TGGGAGATGATCCTGCAGCCAGGAGAGTTGGCCCCGCTTCACACGCATGA
GTACCCCTACACCTTCATCGTGGAGAGCGGGTCTACCGTGGAAGTGCGGG
GGGCCGAGGAAGAGCATCTGCTTACGTTTACGGCCCATGCAGGCGAGGTC
CTCTCCTTTAACCTTATCGGTACGTGGAGGGAGCGAAGGAAGGAGGGTGA
GAAGTCTGAGGATAGTGGATTTCCTCTCTCTTTCCTCGTCTATTGAATGT
CTCTTATCCTGTGGTTTGTATGGTGGATGGTGGTATCGTGTCTGTGTAGG
ATTTCGGAGGAGCAGGATATGTTGCCGTTGCTTTTGGAAGACGAACGTCG
AGGGGCACGAAGAGTCGTGCTGCCGCTCCTGAAGACGCTGGGGCTTCTGC
TGGTGCTGCTGCTCACTATAACCTCACAGGCAGCAGCAATTACCTCGACC
ACCACGACAGTCAGCGACGGCTCCTGTAGCGCAGCATCTACGTCACACGC
CCATGACAGGGACGAGAATCATAAAAACGGCGTAGGCAGCCGTGTCCTCC
ATGAAGATGACCAGATAAAGGTCTGGGAGATGATCCTGCAGCCAGGAGAG
TTGGCCCCGCTTCACACGCATGAGTACCCCTACACCTTCATCGTGGAGAG
CGGGTCTACCGTGGAAGTGCGGGGGGCCGAGGAAGAGCATCTGCTTACGT
TTACGGCCCATGCAGGCGAGGTCCTCTCCTTTAACCTTATCGGTACGTGG
AGGGAGCGAAGGAAGGAGGGTGAGAAGTCTGAGGATAGTGGATTTCCTCT
CTCTTTCCTCGTCTATTGAATGTCTCTTATCCTGTGGTTTGTATGGTGGA
TGGTGGTATCGTGTCTGTGTAGGATTTCGGAGGAGCAGGATATGTTGCCG
TTGCTTTTGGAAGACGAACGTCGAGGGGCACGAAGAGTCGTGCTGCCGCT
CCTGAAGACGCTGGGGCTTCTGCTGGTGCTGCTGCTCACTATAACCTCAC
AGGCAGCAGCAATTACCTCGACCACCACGACAGTCAGCGACGGCTCCTGT
AGCGCAGCATCTACGTCACACGCCCATGACAGGGACGAGAATCATAAAAA
CGGCGTAGGCAGCCGTGTCCTCCATGAAGATGACCAGATAAAGGTCTGGG
AGATGATCCTGCAGCCAGGAGAGTTGGCCCCGCTTCACACGCATGAGTAC
CCCTACACCTTCATCGTGGAGAGCGGGTCTACCGTGGAAGTGCGGGGGGC
CGAGGAAGAGCATCTGCTTACGTTTACGGCCCATGCAGGCGAGGTCCTCT
CCTTTAACCTTATCGGTACGTGGAGGGAGCGAAGGAAGGAGGGTGAGAAG
TCTGAGGATAGTGGATTTCCTCTCTCTTTCCTCGTCTATTGAATGTCTCT
TATCCTGTGGTTTGTATGGTGGATGGTGGTATCGTGTCTGTGTAGGATTT
CGGAGGAGCAGGATATGTTGCCGTTGCTTTTGGAAGACGAACGTCGAGGG
GCACGAAGAGTCGTGCTGCCGCTCCTGAAGACGCTGGGGCTTCTGCTGGT
GCTGCTGCTCACTATAACCTCACAGGCAGCAGCAATTACCTCGACCACCA
CGACAGTCAGCGACGGCTCCTGTAGCGCAGCATCTACGTCACACGCCCAT
GACAGGGACGAGAATCATAAAAACGGCGTAGGCAGCCGTGTCCTCCATGA
AGATGACCAGATAAAGGTCTGGGAGATGATCCTGCAGCCAGGAGAGTTGG
CCCCGCTTCACACGCATGAGTACCCCTACACCTTCATCGTGGAGAGCGGG
TCTACCGTGGAAGTGCGGGGGGCCGAGGAAGAGCATCTGCTTACGTTTAC
GGCCCATGCAGGCGAGGTCCTCTCCTTTAACCTTATCGGTACGTGGAGGG
AGCGAAGGAAGGAGGGTGAGAAGTCTGAGGATAGTGGATTTCCTCTCTCT
TTCCTCGTCTATTGA

Synonyms

Publications