jgi.p|Nanoce1779_2|632783, mRNA_8352 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632783
Unique Name	mRNA_8352
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2196
Alignment location	scaffold_24:10748..12943 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632869
Track	FilteredModels2
ProteinId	632783

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:10748..12943 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632783	gene_8352	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632783	mRNA_8352-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8352	CDS_8352	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:10748..12943+
coding sequence from alignment at scaffold_24:10748..12943+

mRNA sequence

>mRNA_8352 ID=mRNA_8352|Name=jgi.p|Nanoce1779_2|632783|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp
GACAACGTCTTTCCAAAAGGCAGGAGGTTGTACAACACGGCGGCTTGGCA
TGTTCTTTGCCAAGTTTTTTTTTCGTAAACCTGATTCAGCATTTTGCTTG
TGCAAAGTTGCATGTAAATTAAAAGATTTTTTGGAATCGTGGTTCTCCTC
ACCTCCTCCTGTATAAAAGTGCAAGGCGGTCTTACTTCTAACTTCCCTCA
TTACATACAGGATCGACACAACTGCAAACAAAGCGTTGTGTTATCAGCAT
CTTTTCTCTGTTCCCCTCGCCCACCACTCTGAACAGGCGCATCAAAGATC
CGGCAACTCTGTCAGCAAGCGGCCAGTCTCATAGCCCACTTCATGAAGAT
GTTCCTCCCCCTAGGCGCTCTCGCAGAGGATGATGTGGGCGACCTGCAAG
ACTTTCTCAATACCTACCACTGCGCCGCCAAGTACTTCATGGGCTTCGAT
GGGATGACCCTCCTCCATTATGCCGCGCAACAAGGCAGTGGAAAAATCAC
TGCCTGGCTCGTTCATCCTCATCGAGGCCTTGACTTGGACGCCCGCAACA
TCCAAGGACGCACCGCTCTCTTTATTGCTGCTTCTACCGGTGGACCAGGA
AGCGCTAGGGTCGTAGAGATTCTGTTGAAAGCAGGAGCAGATCCCTCCAT
CCCTACTTTGATTGGGAGTACCGCTCTGATGGTGGCAAGGAGCGCAGAAG
TCATGAAGTTACTATTGCAGTATCCGGAGAAGAAAGAAGAGGATGAGAAT
GATGAGGAAGTAGGGATGACGGAGGTAACGGAGAAATCAAAAAAACGAGG
AGAGAGAGGAGGGAAACAATTGATTTTGTTAATTACTGGAGGAGGATTAG
ATGGGGTAATGTATAAATATGAGAAAGACTGCGGTGAAGCAGGGACCAAC
GAAAAAGAAAGAGGGTTAGGGTCATGTCGGGCATATCGATGCGGAGGAGA
GAGTGACCGGGGAGGAGGAGGGCGAGAAGGCGCACCTGGGAGTGACATGA
GATGGGAAAGAAAAGGGAAACGAATGAATTATGAGACACAAACACCATTG
GACATAGATGCAATGGATGTCAACGGACACACCGCCCTGCACCACGCCAT
GTTCGGCGGCCGCAAGGCATACTGGGCTCTTCCCCTCCTCCTTGCCAATG
GAGCCAACCCTTGGGTAAAAGACAGACGGGGAAGACTTTCTATCTACTAC
CTCTCGAGATATTCCCAGCCCGCTTTTATCGAGGCTTTGCTTTCTAAGGC
CATGACCTCCCCTCCGCCGCCGGTGTGGAGTTTGTGTAAAGCGCGGGCGG
CAGAGGAAGTGGAGGAGATGGAGGAGAGGGAGAAAGAGAGGGAGAAGGGG
TGTGCAGATGGACAGGAAGTGAGCAGGCCGTCAGGAGTGCGGGGAGTATG
TAGGACAGATATACGTAAAATAATGGGAGTATCGGAAGCGGAACTTATAG
AGGAGGAAGAAGCGGAGGAGGAAGGAGGGAAGGTGATGGCGCAGGAAGAG
AGGGGAAGGGGGGGGAAGGGTAGGGTGGCTTGTTCGGTGGAAGAAAGGGC
AAAAAAGGGAAACAAGATGCCTCGTATTGTGTGGACAGGAGGAAGTATGG
AGGTCAAGGAGGCGAACGAGGTGGTGAAGGCTGTGGTTCGATTTGTGGTA
GGTGGGGAAGGAGGGAGGTTACGGAGGGAGGGAGGGAGAGCAGTATTGCC
CACGGAGTTATTTGCGGAGCTGGTAGAGATGATGGACTGGCAGGGACGGG
AAGGCTGATTGGGAGGAGAATGAGCGGGAAGTGGAGGAGTAGGCGGTGGT
GAATGATGACGAGAAGGAGGAAGGGTATCGATATATTTTACCAAGACGAG
CAGAAGCATAAGGGGAGGATAATTAAATTCTTGCGCAATTCATGCTCATT
TTTATAGCCTATACTAAGATTGGCACTGCTCCTTCAGTCTTTATTGATAG
AAACTTACTTCTATCGTACTTGTTTTGTTGCTGCTGGCGGGTGGGCACGT
ATTTTCTCAAAAGGAAAGACACTAGGAAGGCTGAATATTCATCTGTATGA
TTGGACATGCAAGAGGGCATTAGAAAATAACACAAATAGAACAATATTCA
TGTAATTTGCGGTAGGCGCGTAGTTCGACAAAAAAGTTGGTAATTTTATA
TACAGAGAGAATCTAGATCAGCCCTCTGCTAATCTTTTCCTCCCTG

protein sequence of jgi.p|Nanoce1779_2|632783

>mRNA_8352-protein ID=mRNA_8352-protein|Name=jgi.p|Nanoce1779_2|632783|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MKMFLPLGALAEDDVGDLQDFLNTYHCAAKYFMGFDGMTLLHYAAQQGSG
KITAWLVHPHRGLDLDARNIQGRTALFIAASTGGPGSARVVEILLKAGAD
PSIPTLIGSTALMVARSAEVMKLLLQYPEKKEEDENDEEVGMTEVTEKSK
KRGERGGKQLILLITGGGLDGVMYKYEKDCGEAGTNEKERGLGSCRAYRC
GGESDRGGGGREGAPGSDMRWERKGKRMNYETQTPLDIDAMDVNGHTALH
HAMFGGRKAYWALPLLLANGANPWVKDRRGRLSIYYLSRYSQPAFIEALL
SKAMTSPPPPVWSLCKARAAEEVEEMEEREKEREKGCADGQEVSRPSGVR
GVCRTDIRKIMGVSEAELIEEEEAEEEGGKVMAQEERGRGGKGRVACSVE
ERAKKGNKMPRIVWTGGSMEVKEANEVVKAVVRFVVGGEGGRLRREGGRA
VLPTELFAELVEMMDWQGREG*

mRNA from alignment at scaffold_24:10748..12943+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8352 ID=mRNA_8352|Name=jgi.p|Nanoce1779_2|632783|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at scaffold_24:10748..12943+ (Nannochloropsis oceanica)
GACAACGTCTTTCCAAAAGGCAGGAGGTTGTACAACACGGCGGCTTGGCA
TGTTCTTTGCCAAGTTTTTTTTTCGTAAACCTGATTCAGCATTTTGCTTG
TGCAAAGTTGCATGTAAATTAAAAGATTTTTTGGAATCGTGGTTCTCCTC
ACCTCCTCCTGTATAAAAGTGCAAGGCGGTCTTACTTCTAACTTCCCTCA
TTACATACAGGATCGACACAACTGCAAACAAAGCGTTGTGTTATCAGCAT
CTTTTCTCTGTTCCCCTCGCCCACCACTCTGAACAGGCGCATCAAAGATC
CGGCAACTCTGTCAGCAAGCGGCCAGTCTCATAGCCCACTTCATGAAGAT
GTTCCTCCCCCTAGGCGCTCTCGCAGAGGATGATGTGGGCGACCTGCAAG
ACTTTCTCAATACCTACCACTGCGCCGCCAAGTACTTCATGGGCTTCGAT
GGGATGACCCTCCTCCATTATGCCGCGCAACAAGGCAGTGGAAAAATCAC
TGCCTGGCTCGTTCATCCTCATCGAGGCCTTGACTTGGACGCCCGCAACA
TCCAAGGACGCACCGCTCTCTTTATTGCTGCTTCTACCGGTGGACCAGGA
AGCGCTAGGGTCGTAGAGATTCTGTTGAAAGCAGGAGCAGATCCCTCCAT
CCCTACTTTGATTGGGAGTACCGCTCTGATGGTGGCAAGGAGCGCAGAAG
TCATGAAGTTACTATTGCAGTATCCGGAGAAGAAAGAAGAGGATGAGAAT
GATGAGGAAGTAGGGATGACGGAGGTAACGGAGAAATCAAAAAAACGAGG
AGAGAGAGGAGGGAAACAATTGATTTTGTTAATTACTGGAGGAGGATTAG
ATGGGGTAATGTATAAATATGAGAAAGACTGCGGTGAAGCAGGGACCAAC
GAAAAAGAAAGAGGGTTAGGGTCATGTCGGGCATATCGATGCGGAGGAGA
GAGTGACCGGGGAGGAGGAGGGCGAGAAGGCGCACCTGGGAGTGACATGA
GATGGGAAAGAAAAGGGAAACGAATGAATTATGAGACACAAACACCATTG
GACATAGATGCAATGGATGTCAACGGACACACCGCCCTGCACCACGCCAT
GTTCGGCGGCCGCAAGGCATACTGGGCTCTTCCCCTCCTCCTTGCCAATG
GAGCCAACCCTTGGGTAAAAGACAGACGGGGAAGACTTTCTATCTACTAC
CTCTCGAGATATTCCCAGCCCGCTTTTATCGAGGCTTTGCTTTCTAAGGC
CATGACCTCCCCTCCGCCGCCGGTGTGGAGTTTGTGTAAAGCGCGGGCGG
CAGAGGAAGTGGAGGAGATGGAGGAGAGGGAGAAAGAGAGGGAGAAGGGG
TGTGCAGATGGACAGGAAGTGAGCAGGCCGTCAGGAGTGCGGGGAGTATG
TAGGACAGATATACGTAAAATAATGGGAGTATCGGAAGCGGAACTTATAG
AGGAGGAAGAAGCGGAGGAGGAAGGAGGGAAGGTGATGGCGCAGGAAGAG
AGGGGAAGGGGGGGGAAGGGTAGGGTGGCTTGTTCGGTGGAAGAAAGGGC
AAAAAAGGGAAACAAGATGCCTCGTATTGTGTGGACAGGAGGAAGTATGG
AGGTCAAGGAGGCGAACGAGGTGGTGAAGGCTGTGGTTCGATTTGTGGTA
GGTGGGGAAGGAGGGAGGTTACGGAGGGAGGGAGGGAGAGCAGTATTGCC
CACGGAGTTATTTGCGGAGCTGGTAGAGATGATGGACTGGCAGGGACGGG
AAGGCTGATTGGGAGGAGAATGAGCGGGAAGTGGAGGAGTAGGCGGTGGT
GAATGATGACGAGAAGGAGGAAGGGTATCGATATATTTTACCAAGACGAG
CAGAAGCATAAGGGGAGGATAATTAAATTCTTGCGCAATTCATGCTCATT
TTTATAGCCTATACTAAGATTGGCACTGCTCCTTCAGTCTTTATTGATAG
AAACTTACTTCTATCGTACTTGTTTTGTTGCTGCTGGCGGGTGGGCACGT
ATTTTCTCAAAAGGAAAGACACTAGGAAGGCTGAATATTCATCTGTATGA
TTGGACATGCAAGAGGGCATTAGAAAATAACACAAATAGAACAATATTCA
TGTAATTTGCGGTAGGCGCGTAGTTCGACAAAAAAGTTGGTAATTTTATA
TACAGAGAGAATCTAGATCAGCCCTCTGCTAATCTTTTCCTCCCTG

Coding sequence (CDS) from alignment at scaffold_24:10748..12943+

>mRNA_8352 ID=mRNA_8352|Name=jgi.p|Nanoce1779_2|632783|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_24:10748..12943+ (Nannochloropsis oceanica)
ATGAAGATGTTCCTCCCCCTAGGCGCTCTCGCAGAGGATGATGTGGGCGA
CCTGCAAGACTTTCTCAATACCTACCACTGCGCCGCCAAGTACTTCATGG
GCTTCGATGGGATGACCCTCCTCCATTATGCCGCGCAACAAGGCAGTGGA
AAAATCACTGCCTGGCTCGTTCATCCTCATCGAGGCCTTGACTTGGACGC
CCGCAACATCCAAGGACGCACCGCTCTCTTTATTGCTGCTTCTACCGGTG
GACCAGGAAGCGCTAGGGTCGTAGAGATTCTGTTGAAAGCAGGAGCAGAT
CCCTCCATCCCTACTTTGATTGGGAGTACCGCTCTGATGGTGGCAAGGAG
CGCAGAAGTCATGAAGTTACTATTGCAGTATCCGGAGAAGAAAGAAGAGG
ATGAGAATGATGAGGAAGTAGGGATGACGGAGGTAACGGAGAAATCAAAA
AAACGAGGAGAGAGAGGAGGGAAACAATTGATTTTGTTAATTACTGGAGG
AGGATTAGATGGGGTAATGTATAAATATGAGAAAGACTGCGGTGAAGCAG
GGACCAACGAAAAAGAAAGAGGGTTAGGGTCATGTCGGGCATATCGATGC
GGAGGAGAGAGTGACCGGGGAGGAGGAGGGCGAGAAGGCGCACCTGGGAG
TGACATGAGATGGGAAAGAAAAGGGAAACGAATGAATTATGAGACACAAA
CACCATTGGACATAGATGCAATGGATGTCAACGGACACACCGCCCTGCAC
CACGCCATGTTCGGCGGCCGCAAGGCATACTGGGCTCTTCCCCTCCTCCT
TGCCAATGGAGCCAACCCTTGGGTAAAAGACAGACGGGGAAGACTTTCTA
TCTACTACCTCTCGAGATATTCCCAGCCCGCTTTTATCGAGGCTTTGCTT
TCTAAGGCCATGACCTCCCCTCCGCCGCCGGTGTGGAGTTTGTGTAAAGC
GCGGGCGGCAGAGGAAGTGGAGGAGATGGAGGAGAGGGAGAAAGAGAGGG
AGAAGGGGTGTGCAGATGGACAGGAAGTGAGCAGGCCGTCAGGAGTGCGG
GGAGTATGTAGGACAGATATACGTAAAATAATGGGAGTATCGGAAGCGGA
ACTTATAGAGGAGGAAGAAGCGGAGGAGGAAGGAGGGAAGGTGATGGCGC
AGGAAGAGAGGGGAAGGGGGGGGAAGGGTAGGGTGGCTTGTTCGGTGGAA
GAAAGGGCAAAAAAGGGAAACAAGATGCCTCGTATTGTGTGGACAGGAGG
AAGTATGGAGGTCAAGGAGGCGAACGAGGTGGTGAAGGCTGTGGTTCGAT
TTGTGGTAGGTGGGGAAGGAGGGAGGTTACGGAGGGAGGGAGGGAGAGCA
GTATTGCCCACGGAGTTATTTGCGGAGCTGGTAGAGATGATGGACTGGCA
GGGACGGGAAGGCTGA

Synonyms

Publications