jgi.p|Nanoce1779_2|632782, mRNA_8351 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632782
Unique NamemRNA_8351
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1523
Alignment locationscaffold_24:9225..10747 -

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Properties
Property NameValue
TranscriptId632868
TrackFilteredModels2
ProteinId632782
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:9225..10747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632782gene_8351Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632782mRNA_8351-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8351CDS_8351Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8351 ID=mRNA_8351|Name=jgi.p|Nanoce1779_2|632782|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
ATCCAACGGAATTCGTCAAAAAAAGTGTTCTCTCCTATACTGTTCCTTCC
TTAAGAAGGACAATGATAAGAATCGCAAGCGGTGAAAAAGCGGTAACCGA
GGTGCAGGGCACATGAGTTCCGTAAGAGCAGAAAGACCATAACCCTGTGG
TTCCGTCCTTCCCTCCATTGGCCTGAAAAGACGCAGCTGCCAACCCCCGT
AGTAGGGCTTTCACTGATTTCGTTTGGGACGCTGAAAATACGGCGACAAT
TGGATAAAGGGCGGGTACTTAAAAGCCCTGTGATTTATATACATTTGTCG
TGGCGGCAAGTTATTTGAGGGTGTGAGGACTCAGCCATGTAGTACGCTTG
CACAAGGCAGCTCTGGGGCGTCCTTGTCGATTTGTGTGCGAGTACTCTGC
TGCTGACCTTACCCCTCTCTCTCCTCGTTTATGCATATACCCAATAAGTG
GTACAGTCTATGTCTCTGCCATTTTACCCTCATCGCACCGGCCCGTCCTC
CTCTTCCCTCCACCATCATCATAGGGGCTCTGTCCTGCTCTCCGAGAGTC
TATCGCACTTCCTCCCCCTGGTTGAGAGTACACAGAATAACTTGGATTCT
TCATCATCCACACACTTATAGCTATCACTTCTTCTGCATCCTTATTCATA
TATTCCTACAGGCGAGGCCGAAGGCCCGGGCAGTAAGTCGTTGCTATGTT
TCGTCCTCTTCCTCCTCGCGTTCCTCCTCCTTCCTTTTCCGTCACTTCTA
CAACATCTACTCAGCTCTCCCTTAGTCATCCTCCCGCTCCCCCTGCTGCT
GTTGAGGGTGTTGAGGCAGCTAAGAAGGACAGCAGACACCACGGGCAGCA
TGAAGTGCCTTCTTCTGAAATCGTGGGGATGGAGGGCTCGCGGGAAGAAG
AGTATCAAATGGAGGTAGTGATGCAAGAAAAGGAAGGGAGGGAAGGAGAA
AGAGCGTGTCATGTGACACCTCCTCATCATAGACGGAATGCGGAGTGGGC
GCGGGCGTTTCAGATGTGCCTGCAAGCGATGGCGGAAGGGAAGGGTTTTG
GAGAGGAGGCGGAGGGGGAGGGAGGGAAGGAGGGGAAGGGAAAGGTGCAG
AGGAGCGAGGATGAGAAGGAGGAGAAAGAAAGAGAAGTGATGGAAGGGCT
AGCATGGGGAATGGGATTGCTGGTGGAGTGAGAGAGGAAGGGAGGGAGAA
AGGAAAAGAGGGAGGAGAGGAGGAGGAGGCGGAGGCGGAAGAAGGGATAT
GATGAAATGAGAGTGCGAGGCGCGGCATGTGGTGGCTTTACCTTACACAG
TTAAGGTATGCATGTGTGTAAAGAGAGTGTGTGCATTGTGTGCTTAGCAT
GAATAGGAAAGTGTGAGGGTTAAGGTTAGGTGTACAGGTGTGTGAACAGG
ATCACTTGTAAGTAAGCGCTTTCCATCATGGAATGGAGGAGTTTCTTAGG
GGTGGGGAATGCAGGCAATGGGGATAGAGGGATAGGGAAAGAATGGAAAA
GTAAACGAAAAGGGAGAGAATGT
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protein sequence of jgi.p|Nanoce1779_2|632782

>mRNA_8351-protein ID=mRNA_8351-protein|Name=jgi.p|Nanoce1779_2|632782|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MFRPLPPRVPPPSFSVTSTTSTQLSLSHPPAPPAAVEGVEAAKKDSRHHG
QHEVPSSEIVGMEGSREEEYQMEVVMQEKEGREGERACHVTPPHHRRNAE
WARAFQMCLQAMAEGKGFGEEAEGEGGKEGKGKVQRSEDEKEEKEREVME
GLAWGMGLLVE*
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mRNA from alignment at scaffold_24:9225..10747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8351 ID=mRNA_8351|Name=jgi.p|Nanoce1779_2|632782|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp|location=Sequence derived from alignment at scaffold_24:9225..10747- (Nannochloropsis oceanica)
ATCCAACGGAATTCGTCAAAAAAAGTGTTCTCTCCTATACTGTTCCTTCC
TTAAGAAGGACAATGATAAGAATCGCAAGCGGTGAAAAAGCGGTAACCGA
GGTGCAGGGCACATGAGTTCCGTAAGAGCAGAAAGACCATAACCCTGTGG
TTCCGTCCTTCCCTCCATTGGCCTGAAAAGACGCAGCTGCCAACCCCCGT
AGTAGGGCTTTCACTGATTTCGTTTGGGACGCTGAAAATACGGCGACAAT
TGGATAAAGGGCGGGTACTTAAAAGCCCTGTGATTTATATACATTTGTCG
TGGCGGCAAGTTATTTGAGGGTGTGAGGACTCAGCCATGTAGTACGCTTG
CACAAGGCAGCTCTGGGGCGTCCTTGTCGATTTGTGTGCGAGTACTCTGC
TGCTGACCTTACCCCTCTCTCTCCTCGTTTATGCATATACCCAATAAGTG
GTACAGTCTATGTCTCTGCCATTTTACCCTCATCGCACCGGCCCGTCCTC
CTCTTCCCTCCACCATCATCATAGGGGCTCTGTCCTGCTCTCCGAGAGTC
TATCGCACTTCCTCCCCCTGGTTGAGAGTACACAGAATAACTTGGATTCT
TCATCATCCACACACTTATAGCTATCACTTCTTCTGCATCCTTATTCATA
TATTCCTACAGGCGAGGCCGAAGGCCCGGGCAGTAAGTCGTTGCTATGTT
TCGTCCTCTTCCTCCTCGCGTTCCTCCTCCTTCCTTTTCCGTCACTTCTA
CAACATCTACTCAGCTCTCCCTTAGTCATCCTCCCGCTCCCCCTGCTGCT
GTTGAGGGTGTTGAGGCAGCTAAGAAGGACAGCAGACACCACGGGCAGCA
TGAAGTGCCTTCTTCTGAAATCGTGGGGATGGAGGGCTCGCGGGAAGAAG
AGTATCAAATGGAGGTAGTGATGCAAGAAAAGGAAGGGAGGGAAGGAGAA
AGAGCGTGTCATGTGACACCTCCTCATCATAGACGGAATGCGGAGTGGGC
GCGGGCGTTTCAGATGTGCCTGCAAGCGATGGCGGAAGGGAAGGGTTTTG
GAGAGGAGGCGGAGGGGGAGGGAGGGAAGGAGGGGAAGGGAAAGGTGCAG
AGGAGCGAGGATGAGAAGGAGGAGAAAGAAAGAGAAGTGATGGAAGGGCT
AGCATGGGGAATGGGATTGCTGGTGGAGTGAGAGAGGAAGGGAGGGAGAA
AGGAAAAGAGGGAGGAGAGGAGGAGGAGGCGGAGGCGGAAGAAGGGATAT
GATGAAATGAGAGTGCGAGGCGCGGCATGTGGTGGCTTTACCTTACACAG
TTAAGGTATGCATGTGTGTAAAGAGAGTGTGTGCATTGTGTGCTTAGCAT
GAATAGGAAAGTGTGAGGGTTAAGGTTAGGTGTACAGGTGTGTGAACAGG
ATCACTTGTAAGTAAGCGCTTTCCATCATGGAATGGAGGAGTTTCTTAGG
GGTGGGGAATGCAGGCAATGGGGATAGAGGGATAGGGAAAGAATGGAAAA
GTAAACGAAAAGGGAGAGAATGT
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Coding sequence (CDS) from alignment at scaffold_24:9225..10747-

>mRNA_8351 ID=mRNA_8351|Name=jgi.p|Nanoce1779_2|632782|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_24:9225..10747- (Nannochloropsis oceanica)
ATGTTTCGTCCTCTTCCTCCTCGCGTTCCTCCTCCTTCCTTTTCCGTCAC
TTCTACAACATCTACTCAGCTCTCCCTTAGTCATCCTCCCGCTCCCCCTG
CTGCTGTTGAGGGTGTTGAGGCAGCTAAGAAGGACAGCAGACACCACGGG
CAGCATGAAGTGCCTTCTTCTGAAATCGTGGGGATGGAGGGCTCGCGGGA
AGAAGAGTATCAAATGGAGGTAGTGATGCAAGAAAAGGAAGGGAGGGAAG
GAGAAAGAGCGTGTCATGTGACACCTCCTCATCATAGACGGAATGCGGAG
TGGGCGCGGGCGTTTCAGATGTGCCTGCAAGCGATGGCGGAAGGGAAGGG
TTTTGGAGAGGAGGCGGAGGGGGAGGGAGGGAAGGAGGGGAAGGGAAAGG
TGCAGAGGAGCGAGGATGAGAAGGAGGAGAAAGAAAGAGAAGTGATGGAA
GGGCTAGCATGGGGAATGGGATTGCTGGTGGAGTGA
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Synonyms
Publications