jgi.p|Nanoce1779_2|574297, mRNA_835 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574297
Unique Name	mRNA_835
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1251
Alignment location	scaffold_2:536833..538649 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574383
Track	FilteredModels2
ProteinId	574297

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:536833..538649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574297	gene_835	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574297	mRNA_835-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_835	CDS_835	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:536833..538649+
coding sequence from alignment at scaffold_2:536833..538649+

mRNA sequence

>mRNA_835 ID=mRNA_835|Name=jgi.p|Nanoce1779_2|574297|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
AGCCCAAGTAGTACAGGTCCAGGTTCTTCTGCTGTCCTTTTGACAGCCTG
CCTCGCTTCCTTCCATTCGCTGCCCCCTTCAACACACGTCCACACATATA
CTTCCCAGCCATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTG
TCCGCCGCTCTGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACG
CCGCTGGCGGGTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCC
CGCTGCAAATCACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGG
GCTTTGACTTTCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAA
GCCATTATCGAAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGAT
TTCTGTCTTCGACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAAT
TTGGAGTGGGAACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGAT
TTGGTCATCATTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGC
ACAACTGAAGGAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGG
CCGGCATGACCATGTCGAACTTTAGCGAGAACACCGGCAACACACGCATA
GTCCGTACGATGCCCAATACCCCCGCCACCATCCAACAAGGAATGACTGT
CTGGGCGTGCAGCGACGACGTTAGCCTCTCCCAACGGAACTCGGTCGCCA
AGTTTCTGTCGAGTTTGGGGGAGCAGCACTTTGTCCAAAATGAGCTTTAT
CTAGACATGGCCACGGCGGTCAGTGGGTCAGGGCCGGGGTATGTGATGCT
TATCCTCGAGGCACTCGTTGACGCGGCGGTACATCTCGGCTTCTCCCGCG
ACATCGCCTCCAAGCTCGTCCTTCAGACGGTCTACGGGACCACGGCCCTC
GCTATGAAAAGCGGGCTCCACCCGGCCATACTTCGCAACAGCGTCACGAG
TCCAGGAGGGACGACAGCTTCGGCATTGTACGTATTAGAGCAAGGGCGGT
TCCGTACTGTGCTGGCTGACGCGTTGTGGAGTGCCTATCGACGGAGTTTG
GAGCTGGGTCATATGGACAGTAACGTCGGTCCGGGTAGAGCAAAGCACGA
GCCGCACGAGATGGATGGGCATAAGAAGTAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGAAGAAATGAGGGTGGAGGAGATCTCAAATAACTGAAAGTCGT
G

protein sequence of jgi.p|Nanoce1779_2|574297

>mRNA_835-protein ID=mRNA_835-protein|Name=jgi.p|Nanoce1779_2|574297|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MLSTRLLAITTAAVRRSALLQRHNPSTLITPLAGSTVPIRYMHRSQPAAN
HGDSLTDPDADAEGFDFHRIGLVGGGKMSEAIIEGFLKEQLIKPERISVF
DVNRARLEFLKKEFGVGTSSSVAATCKNADLVIIAVKPQNLSDKLWAQLK
EHLSPQSVLLSIVAGMTMSNFSENTGNTRIVRTMPNTPATIQQGMTVWAC
SDDVSLSQRNSVAKFLSSLGEQHFVQNELYLDMATAVSGSGPGYVMLILE
ALVDAAVHLGFSRDIASKLVLQTVYGTTALAMKSGLHPAILRNSVTSPGG
TTASALYVLEQGRFRTVLADALWSAYRRSLELGHMDSNVGPGRAKHEPHE
MDGHKK*

mRNA from alignment at scaffold_2:536833..538649+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_835 ID=mRNA_835|Name=jgi.p|Nanoce1779_2|574297|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp|location=Sequence derived from alignment at scaffold_2:536833..538649+ (Nannochloropsis oceanica)
AGCCCAAGTAGTACAGGTCCAGGTTCTTCTGCTGTCCTTTTGACAGCCTG
CCTCGCTTCCTTCCATTCGCTGCCCCCTTCAACACACGTCCACACATATA
CTTCCCAGCCATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTG
TCCGCCGCTCTGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACG
CCGCTGGCGGGTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCC
CGCTGCAAATCACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGG
GCTTTGACTTTCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAA
GCCATTATCGAAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGAT
TTCTGTCTTCGACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAAT
TTGGAGTGGGAACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGAT
TTGGTCATCATTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGC
ACAACTGAAGGAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGG
CCGGTAAGAATGGGGGCGTGGGGGAACAAAGGGAGTGAATAGGTTGCACC
TGTAGAGACGAAATGAGGCGAAGCTGTAATTCTCCTGAGGAATAGGATCA
AGGGCGATGAGGATGAAGGGGCATTTCAGTTTGCGAGATAAGACGAAGTC
TCAACCCCCCTCCCCTCCCCCCCCTCACTCAGGCATGACCATGTCGAACT
TTAGCGAGAACACCGGCAACACACGCATAGTCCGTACGATGCCCAATACC
CCCGCCACCATCCAACAAGGAATGACTGTCTGGGCGTGCAGCGACGACGT
TAGCCTCTCCCAACGGAACTCGGTCGCCAAGTTTCTGTCGAGTTTGGGGG
AGCAGCACTTTGTCCAAAATGAGCTTTATCTAGACATGGCCACGGCGGTC
AGTGGGTCAGGGCCGGGGTATGTGATGCTTATCCTCGAGGCACTCGTTGA
CGCGGGTACGTGACTGCCGTTTCAAGGGGTTGGAAGAGGGGGAAATGTCG
TGGCCCGGTGGATATTGAGTCCGTCGCAGATGTGTTGGACGACAAAGCTG
ACAAATATCCACCAAGCCACGATAACAACATCCCATCCATAATCAAATAG
ACCAGCTGAACACATAGGCCGCACACTTATTGGCACCATTAAGGCATGGA
GGTCGGGCATGAAGGGGAAATAACTCACTTGCCCCCGTCCCACGTCTTTA
AAATGCGAATAAGTGTGCGGTTCATGCGTTCAACTGGTCCATTTGATTTT
GGATGGGCTACGCGATTCTTCTGCTTTTTCATGCAGGCGTGTATACCACT
TATCACCATCAACTAATGTCCCTTCCTGCCTGTTCACAACAGCGGTACAT
CTCGGCTTCTCCCGCGACATCGCCTCCAAGCTCGTCCTTCAGACGGTCTA
CGGGACCACGGCCCTCGCTATGAAAAGCGGGCTCCACCCGGCCATACTTC
GCAACAGCGTCACGAGTCCAGGAGGGACGACAGCTTCGGCATTGTACGTA
TTAGAGCAAGGGCGGTTCCGTACTGTGCTGGCTGACGCGTTGTGGAGTGC
CTATCGACGGAGTTTGGAGCTGGGTCATATGGACAGTAACGTCGGTCCGG
GTAGAGCAAAGCACGAGCCGCACGAGATGGATGGGCATAAGAAGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGAAGAAATGAGGGTGGAGGAGATCTCA
AATAACTGAAAGTCGTG

Coding sequence (CDS) from alignment at scaffold_2:536833..538649+

>mRNA_835 ID=mRNA_835|Name=jgi.p|Nanoce1779_2|574297|organism=Nannochloropsis oceanica|type=CDS|length=3213bp|location=Sequence derived from alignment at scaffold_2:536833..538649+ (Nannochloropsis oceanica)
ATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTGTCCGCCGCTC
TGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACGCCGCTGGCGG
GTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCCCGCTGCAAAT
CACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGGGCTTTGACTT
TCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAAGCCATTATCG
AAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGATTTCTGTCTTC
GACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAATTTGGAGTGGG
AACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGATTTGGTCATCA
TTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGCACAACTGAAG
GAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGGCCGGCATGAC
CATGTCGAACTTTAGCGAGAACACCGGCAACACACGCATAGTCCGTACGA
TGCCCAATACCCCCGCCACCATCCAACAAGGAATGACTGTCTGGGCGTGC
AGCGACGACGTTAGCCTCTCCCAACGGAACTCGGTCGCCAAGTTTCTGTC
GAGTTTGGGGGAGCAGCACTTTGTCCAAAATGAGCTTTATCTAGACATGG
CCACGGCGGTCAGTGGGTCAGGGCCGGGGTATGTGATGCTTATCCTCGAG
GCACTCGTTGACGCGGCGGTACATCTCGGCTTCTCCCGCGACATCGCCTC
CAAGCTCGTCCTTCAGACGGTCTACGGGACCACGGCCCTCGCTATGAAAA
GCGGGCTCCACCCGGCCATACTTCGCAACAGCGTCACGAGTCCAGGAGGG
ACGACAGCTTCGGCATTGTACGTATTAGAGCAAGGGCGGTTCCGTACTGT
GCTGGCTGACGCGTTGTGGAGTGCCTATCGACGGAGTTTGGAGCTGGGTC
ATATGGACAGTAACGTCGGTCCGGGTAGAGCAAAGCACGAGCCGCACGAG
ATGGATGGGCATAAGAAGTAGATGCTGTCGACCCGCCTCCTGGCCATCAC
GACGGCTGCTGTCCGCCGCTCTGCTTTGTTGCAGAGACACAATCCAAGCA
CTCTGATCACGCCGCTGGCGGGTTCGACGGTGCCCATTCGATACATGCAT
CGAAGCCAGCCCGCTGCAAATCACGGCGACTCCCTTACTGATCCCGATGC
GGACGCAGAGGGCTTTGACTTTCATCGAATTGGCCTGGTTGGGGGGGGCA
AAATGAGCGAAGCCATTATCGAAGGCTTTCTGAAGGAGCAACTGATTAAA
CCCGAAAGGATTTCTGTCTTCGACGTAAATCGCGCAAGGCTTGAATTCCT
GAAGAAGGAATTTGGAGTGGGAACCTCGTCCTCAGTCGCCGCTACGTGTA
AGAATGCGGATTTGGTCATCATTGCTGTCAAGCCCCAGAATTTATCTGAC
AAGCTGTGGGCACAACTGAAGGAGCACTTGTCTCCGCAGTCAGTATTATT
GAGTATCGTGGCCGGCATGACCATGTCGAACTTTAGCGAGAACACCGGCA
ACACACGCATAGTCCGTACGATGCCCAATACCCCCGCCACCATCCAACAA
GGAATGACTGTCTGGGCGTGCAGCGACGACGTTAGCCTCTCCCAACGGAA
CTCGGTCGCCAAGTTTCTGTCGAGTTTGGGGGAGCAGCACTTTGTCCAAA
ATGAGCTTTATCTAGACATGGCCACGGCGGTCAGTGGGTCAGGGCCGGGG
TATGTGATGCTTATCCTCGAGGCACTCGTTGACGCGGCGGTACATCTCGG
CTTCTCCCGCGACATCGCCTCCAAGCTCGTCCTTCAGACGGTCTACGGGA
CCACGGCCCTCGCTATGAAAAGCGGGCTCCACCCGGCCATACTTCGCAAC
AGCGTCACGAGTCCAGGAGGGACGACAGCTTCGGCATTGTACGTATTAGA
GCAAGGGCGGTTCCGTACTGTGCTGGCTGACGCGTTGTGGAGTGCCTATC
GACGGAGTTTGGAGCTGGGTCATATGGACAGTAACGTCGGTCCGGGTAGA
GCAAAGCACGAGCCGCACGAGATGGATGGGCATAAGAAGTAGATGCTGTC
GACCCGCCTCCTGGCCATCACGACGGCTGCTGTCCGCCGCTCTGCTTTGT
TGCAGAGACACAATCCAAGCACTCTGATCACGCCGCTGGCGGGTTCGACG
GTGCCCATTCGATACATGCATCGAAGCCAGCCCGCTGCAAATCACGGCGA
CTCCCTTACTGATCCCGATGCGGACGCAGAGGGCTTTGACTTTCATCGAA
TTGGCCTGGTTGGGGGGGGCAAAATGAGCGAAGCCATTATCGAAGGCTTT
CTGAAGGAGCAACTGATTAAACCCGAAAGGATTTCTGTCTTCGACGTAAA
TCGCGCAAGGCTTGAATTCCTGAAGAAGGAATTTGGAGTGGGAACCTCGT
CCTCAGTCGCCGCTACGTGTAAGAATGCGGATTTGGTCATCATTGCTGTC
AAGCCCCAGAATTTATCTGACAAGCTGTGGGCACAACTGAAGGAGCACTT
GTCTCCGCAGTCAGTATTATTGAGTATCGTGGCCGGCATGACCATGTCGA
ACTTTAGCGAGAACACCGGCAACACACGCATAGTCCGTACGATGCCCAAT
ACCCCCGCCACCATCCAACAAGGAATGACTGTCTGGGCGTGCAGCGACGA
CGTTAGCCTCTCCCAACGGAACTCGGTCGCCAAGTTTCTGTCGAGTTTGG
GGGAGCAGCACTTTGTCCAAAATGAGCTTTATCTAGACATGGCCACGGCG
GTCAGTGGGTCAGGGCCGGGGTATGTGATGCTTATCCTCGAGGCACTCGT
TGACGCGGCGGTACATCTCGGCTTCTCCCGCGACATCGCCTCCAAGCTCG
TCCTTCAGACGGTCTACGGGACCACGGCCCTCGCTATGAAAAGCGGGCTC
CACCCGGCCATACTTCGCAACAGCGTCACGAGTCCAGGAGGGACGACAGC
TTCGGCATTGTACGTATTAGAGCAAGGGCGGTTCCGTACTGTGCTGGCTG
ACGCGTTGTGGAGTGCCTATCGACGGAGTTTGGAGCTGGGTCATATGGAC
AGTAACGTCGGTCCGGGTAGAGCAAAGCACGAGCCGCACGAGATGGATGG
GCATAAGAAGTAG

Synonyms

Publications